cluster # 8524

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Schistosoma mansoni
cluster # 8524 cluster # 8524 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8524#0 length = 538 sequences # 6

consensus_8524#1 length = 492 sequences # 1

consensusID : consensus_8524#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 538
fasta sequence

                              [TTCAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGTAGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAGCTCGCAATC-GGAGGGCAAAACGACTCAAGGAAGCT-AAAGGAGAAGC-AAATTTGGAAGTC-GATGCTTTCAAA-GCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAAAAAAAA]

[+] EMBL CD183665             [TTCAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGTAGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAGCTCGCAATC GGAGGGCAAAACGACTCAAGGAAGCT AAAGGAGAAGC AAATTTGGAAGTC GATGCTTTCAAA GCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTGGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAG                                                                                                                                                      ]
[+] EMBL CD079940             [ TCAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGTAGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAGCTCGCAATC GGAGGGCAAAACGACTCAAGGAAGCT AAAGGAGAAGC AAATTTGGAAGTC GATGCTTTCAAA GCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGT                            ]
[-] EMBL CD074137             [  CAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGTAGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAGCTCGCAATC GGAGGGCAAAACGACTCAAGGAAGCT AAAGGAGAAGC AAATTTGGAAGTC GATGCTTTCAAA GCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTT                           ]
[+] EMBL SMAA69184            [                                          AGCTCAAAGCGATGGGGTAGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAG TCG AATC GGAGGG AAAACGA TCAAGGAAG T AAAGGAGAATG AAA                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD141569             [                                                                                                   angAGAGGAAGCTCGC ATCGGGAGGGCAAAACGACTCAAGGAAGCT AAAGGAGAAGC AAATTTGGAAGTC GATGCTTTCAAA GCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAGAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTAATGTTCTTT                                                                                                                       ]
[-] EMBL AI394972             [                                                                                                                                            GAACCTAAAAGGCTAATCAAAATTTGGACCTCTGATGATTTCAAATTCACTACAGGAATCTCATTATAGCTCACCTGAGGTCCAAGTTAACTGACAATATGATCCATACGAAGAATTATGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTATTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAAAAAAAA]




>consensus_8524#0
TTCAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGT
AGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAGCTCGCAATCG
GAGGGCAAAACGACTCAAGGAAGCTAAAGGAGAAGCAAATTTGGAAGTCGATGCTTTCAA
AGCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCC
CTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTT
CCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCC
TGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTC
AAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAA
TCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAAAAAAAA

consensusID : consensus_8524#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [CACGAGGGCCCAAAATTTACCAGGGTTGGACAAGCAGCTTTTGGGGAAAATAGGAGAAGATTCCCATTAGGGAGGGGAAAAACGGTTTCAAGGAAGGTTATAGGGGAAGGCAAATTTGGAAATCGATGTTTTCAAAGCGCAACCGGGAAGTCCTTTTAAATCACCTGAGGCTCAAGGTAACTTACAATATTGTCCCTTCGAAGAATTTTGTTGTCAAATTACCGGCGAACCGGTAAACTCAATGCAACGTTTGTTCCCGTAAAACAAAATGCCGCTNTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAAAAAAAA]

[-] EMBL AI395353             [CACGAGGGCCCAAAATTTACCAGGGTTGGACAAGCAGCTTTTGGGGAAAATAGGAGAAGATTCCCATTAGGGAGGGGAAAAACGGTTTCAAGGAAGGTTATAGGGGAAGGCAAATTTGGAAATCGATGTTTTCAAAGCGCAACCGGGAAGTCCTTTTAAATCACCTGAGGCTCAAGGTAACTTACAATATTGTCCCTTCGAAGAATTTTGTTGTCAAATTACCGGCGAACCGGTAAACTCAATGCAACGTTTGTTCCCGTAAAACAAAATGCCGCTNTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAAAAAAAA]




>consensus_8524#1
CACGAGGGCCCAAAATTTACCAGGGTTGGACAAGCAGCTTTTGGGGAAAATAGGAGAAGA
TTCCCATTAGGGAGGGGAAAAACGGTTTCAAGGAAGGTTATAGGGGAAGGCAAATTTGGA
AATCGATGTTTTCAAAGCGCAACCGGGAAGTCCTTTTAAATCACCTGAGGCTCAAGGTAA
CTTACAATATTGTCCCTTCGAAGAATTTTGTTGTCAAATTACCGGCGAACCGGTAAACTC
AATGCAACGTTTGTTCCCGTAAAACAAAATGCCGCTNTGCAGTTATTGTTGTCTAAAGTT
TTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAG
GTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCA
ATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8524#0      TTCAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGT 60
consensus_8524#1      ----------------------------------------------------CACGAGG- 7
                                                                           * * ** 

consensus_8524#0      AGCCAAACTGCAACAGGCTCGCACA-GCAGCTCT-GGCGAAAATAGAGGAAGCTCGCAAT 118
consensus_8524#1      GCCCAAAATTTACCAGGGTTGGACAAGCAGCTTTTGGGGAAAATAGGAGAAGATTCCCAT 67
                        ***** *  * **** * * *** ****** * ** ********  **** *  * **

consensus_8524#0      CGGAG---GGCAAAACGACT-CAAGGAAG-CTAAAGGAGAAG-CAAATTTGGAAGTCGAT 172
consensus_8524#1      TAGGGAGGGGAAAAACGGTTTCAAGGAAGGTTATAGGGGAAGGCAAATTTGGAAATCGAT 127
                        * *   ** ******  * ********  ** *** **** *********** *****

consensus_8524#0      GCTTTCAAAGCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAA 232
consensus_8524#1      GTTTTCAAAGCGCAACCGGGAAGTCCTTTTAAATCACCTGAGGCTCAAGGTAACTTACAA 187
                      * ********* **** ** *  ** ** *** **** ****  ***** ***** ****

consensus_8524#0      TATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAA 292
consensus_8524#1      TATTGTCCCTTCGAAGAATTTTGTTGTCAAATTACCGGCGAACCGGTAAACTCAATGCAA 247
                      *** ****** ********* *** ******* ** * ***** * **************

consensus_8524#0      CGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGAT 352
consensus_8524#1      CGTTTGTTCCCGTAAAACAAAA-TGCCGCTNTGCAGTTATTGTTGTCTAAAGTTTTAGAT 306
                      **** ***** ** ******** *** *** *****************************

consensus_8524#0      GTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTAT 412
consensus_8524#1      GTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTAT 366
                      ************************************************************

consensus_8524#0      GTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTG 472
consensus_8524#1      GTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTG 426
                      ************************************************************

consensus_8524#0      ATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAA 532
consensus_8524#1      ATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAA 486
                      ************************************************************

consensus_8524#0      AAAAAA 538
consensus_8524#1      AAAAAA 492
                      ******