These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 746 fasta sequence [ACGCATCGATGTACTTCTTGTCGTCTCGACTTCACACATAAAAGGGACCTTCAGTGGCACGAGTATTTAGACCATTCTG-GACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGTGAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTTGCGCACACACCACGCACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCACAACACGAAACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTTCATCAACTACTCATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATNTGTTAGAGGATATGCTAGATGTAACTGCGGCTTCCGCACGATGGTCTATNNCNNNGNNNNNNCNNNGNCNNCNTCGGAGGAAGGACGAATATCTGTAGTTGCACACCTCGCGCATGTCTATGTCGCGTCTGCAGACTGGCACTCTGGTGCAAAGAATCCNGTACCATCTGACTTNNNNNNNNNNNCNGNNNNNNNNNNNNNAACTTGTTGACATTCCATAAA] [+] EMBL CD150254 [ACGCATCGATGTACTTCTTGTCGTCTCGACTTCACACATAAAAGGGACCTTCAGTGGCACGAGTATTTAGACCATTCTG GACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGTGAACTTTCGTCACACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTTGCGCACACACCACGCGCAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAGTTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCA ] [+] EMBL CD150279 [ACGCATCGATGTACTTCTTGTCGTCTCGACTTCACACATAAAAGGGACCTTCAGTGGCACGAGTATTTAGACCATTCTG GACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGTGAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTTGCGCACACACCACGCACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACACCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCA ] [+] EMBL CD079927 [ AGTGGCACGAGTATTTAGACCATTCTG GACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGTGAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTTGCGCACACACCACGCACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCACAACACGAAACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTTCATCAACTACTCATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATNTGTTAGAGGATATGCTAGATGTAACTGCGGCTTCCGCACGATGGTCTATNNCNNNGNNNNNNCNNNGNCNNCNTCGGAGGAAGGACGAATATCTGTAGTTGCACACCTCGCGCATGTCTATGTCGCGTCTGCAGACTGGCACTCTGGTGCAAAGAATCCNGTACCATCTGACTTNNNNNNNNNNNCNGNNNNNNNNNNNNNAACTTGTTGACATTCCATAAA] [+] EMBL CD079131 [ TTTAGACCATTCTGNGACATCCTTTATCAAAGCCTATGTGCCAAAATAATGCTTGTGAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTTGCGCACACACCACGCACAAGACTGAAGTGTTTACAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCATCCTTGGCACATGAATATCAACACTGCTGCACAACACGAAACACAATCACTCAGCATGGTCAGCGCGACACTTTATGATCCATGTTCTTCATCAACTACTCATGCAAAGCGATGTACAAACGAGCATGTACCTGCAGGGCTATTTGTTAGAGGATATGTAAGATGT ] [-] EMBL CD191112 [ ACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCACCACCCA ] [-] EMBL CD194939 [ CACCCAGTACAGAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCAACCTTGGCACA ] consensusID : consensus_8525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [CGAAACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTGCATCAACTACTCATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATTTGTTAGAGGATATGTAAGATGTAACTGCGGCTTCCGCCCCATGGTCTATGACCTAATGGCGCGTCACTTAGCAACGGAGGGCGAAGGACATGATCTTGCTAAGTTTGTGTACAACCTCCGGCCGTCATCGTTTCTAATAGTCGCCCGTCCTGCGAAGACATTGCGCACCTCCTTGTGGTGGCAGAAAAGAATATCCCGGTTACCCCATTTCTTGAACTCTGTTGGACTATCCCAATAAAAATA] [-] EMBL CD074123 [CGAAACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTGCATCAACTACTCATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATTTGTTAGAGGATATGTAAGATGTAACTGCGGCTTCCGCCCCATGGTCTATGACCTAATGGCGCGTCACTTAGCAACGGAGGGCGAAGGACATGATCTTGCTAAGTTTGTGTACAACCTCCGGCCGTCATCGTTTCTAATAGTCGCCCGTCCTGCGAAGACATTGCGCACCTCCTTGTGGTGGCAGAAAAGAATATCCCGGTTACCCCATTTCTTGAACTCTGTTGGACTATCCCAATAAAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8525#0 ACGCATCGATGTACTTCTTGTCGTCTCGACTTCACACATAAAAGGGACCTTCAGTGGCAC 60 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 GAGTATTTAGACCATTCTGGACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGT 120 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 GAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTT 180 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 GCGCACACACCACGCACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCA 240 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 GTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGT 300 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 ATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTC 360 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 TCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCACAACACGAA 420 consensus_8525#1 --------------------------------------------------------CGAA 4 **** consensus_8525#0 ACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTTCATCAACTACT 480 consensus_8525#1 ACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTGCATCAACTACT 64 ************************************************ *********** consensus_8525#0 CATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATNTGTTAGAGGATATGCT 540 consensus_8525#1 CATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATTTGTTAGAGGATATGTA 124 ******************************************* ************** consensus_8525#0 AGATGTAACTGCGGCTTCCGCACGATGGTCTATNNCNNNGNNNNNNCNNNGNCNNCNTCG 600 consensus_8525#1 AGATGTAACTGCGGCTTCCGCCCCATGGTCTATGACCTAATGGCGCGTCACTTAGCAACG 184 ********************* * ********* * * ** consensus_8525#0 GAGG---AAGGACG-AATATCTGTAGTTGCACACCTCGCGCATGTCTAT-GTCGCGTCTG 655 consensus_8525#1 GAGGGCGAAGGACATGATCTTGCTAAGTTTGTGTACAACCTCCGGCCGTCATCGTTTCTA 244 **** ****** ** * ** * * * * * *** *** consensus_8525#0 CAGACTGGCACTCTGGTGCAAAGAATCCNGTACCATCTGACTTNNNNNNNNNNNCNGNNN 715 consensus_8525#1 ATAGTCGCCCGTCCTGCG-AAGACATTGCGCACCTCCTTGTGGTGGCAGAAAAGAATATC 303 * * ** * * ** ** * *** ** consensus_8525#0 NNNNNNNNNNAACTTGTTGACATTCCATAAA----------------- 746 consensus_8525#1 CCGGTTACCCCATTTCTTGAACTCTGTTGGACTATCCCAATAAAAATA 351 * ** **** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||