cluster # 8525

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Schistosoma mansoni
cluster # 8525 cluster # 8525 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8525#0 length = 746 sequences # 6

consensus_8525#1 length = 351 sequences # 1

consensusID : consensus_8525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 746
fasta sequence

                              [ACGCATCGATGTACTTCTTGTCGTCTCGACTTCACACATAAAAGGGACCTTCAGTGGCACGAGTATTTAGACCATTCTG-GACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGTGAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTTGCGCACACACCACGCACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCACAACACGAAACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTTCATCAACTACTCATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATNTGTTAGAGGATATGCTAGATGTAACTGCGGCTTCCGCACGATGGTCTATNNCNNNGNNNNNNCNNNGNCNNCNTCGGAGGAAGGACGAATATCTGTAGTTGCACACCTCGCGCATGTCTATGTCGCGTCTGCAGACTGGCACTCTGGTGCAAAGAATCCNGTACCATCTGACTTNNNNNNNNNNNCNGNNNNNNNNNNNNNAACTTGTTGACATTCCATAAA]

[+] EMBL CD150254             [ACGCATCGATGTACTTCTTGTCGTCTCGACTTCACACATAAAAGGGACCTTCAGTGGCACGAGTATTTAGACCATTCTG GACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGTGAACTTTCGTCACACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTTGCGCACACACCACGCGCAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAGTTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCA                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD150279             [ACGCATCGATGTACTTCTTGTCGTCTCGACTTCACACATAAAAGGGACCTTCAGTGGCACGAGTATTTAGACCATTCTG GACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGTGAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTTGCGCACACACCACGCACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACACCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCA                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD079927             [                                                    AGTGGCACGAGTATTTAGACCATTCTG GACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGTGAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTTGCGCACACACCACGCACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCACAACACGAAACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTTCATCAACTACTCATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATNTGTTAGAGGATATGCTAGATGTAACTGCGGCTTCCGCACGATGGTCTATNNCNNNGNNNNNNCNNNGNCNNCNTCGGAGGAAGGACGAATATCTGTAGTTGCACACCTCGCGCATGTCTATGTCGCGTCTGCAGACTGGCACTCTGGTGCAAAGAATCCNGTACCATCTGACTTNNNNNNNNNNNCNGNNNNNNNNNNNNNAACTTGTTGACATTCCATAAA]
[+] EMBL CD079131             [                                                                 TTTAGACCATTCTGNGACATCCTTTATCAAAGCCTATGTGCCAAAATAATGCTTGTGAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTTGCGCACACACCACGCACAAGACTGAAGTGTTTACAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCATCCTTGGCACATGAATATCAACACTGCTGCACAACACGAAACACAATCACTCAGCATGGTCAGCGCGACACTTTATGATCCATGTTCTTCATCAACTACTCATGCAAAGCGATGTACAAACGAGCATGTACCTGCAGGGCTATTTGTTAGAGGATATGTAAGATGT                                                                                                                                                                                                        ]
[-] EMBL CD191112             [                                                                                                                                                                                                    ACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCAGTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCACCACCCA                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD194939             [                                                                                                                                                                                                                                           CACCCAGTACAGAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGTATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTCTCTGTTCCTAATGATACGCAACCTTGGCACA                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_8525#0
ACGCATCGATGTACTTCTTGTCGTCTCGACTTCACACATAAAAGGGACCTTCAGTGGCAC
GAGTATTTAGACCATTCTGGACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGT
GAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTT
GCGCACACACCACGCACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCA
GTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGT
ATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTC
TCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCACAACACGAA
ACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTTCATCAACTACT
CATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATNTGTTAGAGGATATGCT
AGATGTAACTGCGGCTTCCGCACGATGGTCTATNNCNNNGNNNNNNCNNNGNCNNCNTCG
GAGGAAGGACGAATATCTGTAGTTGCACACCTCGCGCATGTCTATGTCGCGTCTGCAGAC
TGGCACTCTGGTGCAAAGAATCCNGTACCATCTGACTTNNNNNNNNNNNCNGNNNNNNNN
NNNNNAACTTGTTGACATTCCATAAA

consensusID : consensus_8525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [CGAAACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTGCATCAACTACTCATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATTTGTTAGAGGATATGTAAGATGTAACTGCGGCTTCCGCCCCATGGTCTATGACCTAATGGCGCGTCACTTAGCAACGGAGGGCGAAGGACATGATCTTGCTAAGTTTGTGTACAACCTCCGGCCGTCATCGTTTCTAATAGTCGCCCGTCCTGCGAAGACATTGCGCACCTCCTTGTGGTGGCAGAAAAGAATATCCCGGTTACCCCATTTCTTGAACTCTGTTGGACTATCCCAATAAAAATA]

[-] EMBL CD074123             [CGAAACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTGCATCAACTACTCATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATTTGTTAGAGGATATGTAAGATGTAACTGCGGCTTCCGCCCCATGGTCTATGACCTAATGGCGCGTCACTTAGCAACGGAGGGCGAAGGACATGATCTTGCTAAGTTTGTGTACAACCTCCGGCCGTCATCGTTTCTAATAGTCGCCCGTCCTGCGAAGACATTGCGCACCTCCTTGTGGTGGCAGAAAAGAATATCCCGGTTACCCCATTTCTTGAACTCTGTTGGACTATCCCAATAAAAATA]




>consensus_8525#1
CGAAACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTGCATCAAC
TACTCATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATTTGTTAGAGGATA
TGTAAGATGTAACTGCGGCTTCCGCCCCATGGTCTATGACCTAATGGCGCGTCACTTAGC
AACGGAGGGCGAAGGACATGATCTTGCTAAGTTTGTGTACAACCTCCGGCCGTCATCGTT
TCTAATAGTCGCCCGTCCTGCGAAGACATTGCGCACCTCCTTGTGGTGGCAGAAAAGAAT
ATCCCGGTTACCCCATTTCTTGAACTCTGTTGGACTATCCCAATAAAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8525#0      ACGCATCGATGTACTTCTTGTCGTCTCGACTTCACACATAAAAGGGACCTTCAGTGGCAC 60
consensus_8525#1      ------------------------------------------------------------
                                                                                  

consensus_8525#0      GAGTATTTAGACCATTCTGGACATCCTTTATCAAAGCCTAGTTGCGAAAATAATGCTTGT 120
consensus_8525#1      ------------------------------------------------------------
                                                                                  

consensus_8525#0      GAACTTTCGTCTCACTTACCCGATGACCAATTGTCTCTTTCCTACTCAAATCAACTAGTT 180
consensus_8525#1      ------------------------------------------------------------
                                                                                  

consensus_8525#0      GCGCACACACCACGCACAAGACTGAAGTGTTTAGAATGCGGAGAGCAGGTACGTCACCCA 240
consensus_8525#1      ------------------------------------------------------------
                                                                                  

consensus_8525#0      GTACATAAGCATTTCAACATGACACTAAGTTGTGCTAGATGCAAATACGCTACATCATGT 300
consensus_8525#1      ------------------------------------------------------------
                                                                                  

consensus_8525#0      ATCGTTGCAGCTAATTGGCATTGGAGCAAAGCTCATTGTGCGCCACCCATACAGCAGTTC 360
consensus_8525#1      ------------------------------------------------------------
                                                                                  

consensus_8525#0      TCTGTTCCTAATGATACGCAACCTTGGCACATGAATATCAACACTGCTGCACAACACGAA 420
consensus_8525#1      --------------------------------------------------------CGAA 4
                                                                              ****

consensus_8525#0      ACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTTCATCAACTACT 480
consensus_8525#1      ACACAATCACTCAGCATGGTCAGTGCGTCACTTTATGATCCATGTTCTGCATCAACTACT 64
                      ************************************************ ***********

consensus_8525#0      CATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATNTGTTAGAGGATATGCT 540
consensus_8525#1      CATGCAAAGCGATGTAGAAACGAGCATGTACCTGCAGGGCTATTTGTTAGAGGATATGTA 124
                      ******************************************* **************  

consensus_8525#0      AGATGTAACTGCGGCTTCCGCACGATGGTCTATNNCNNNGNNNNNNCNNNGNCNNCNTCG 600
consensus_8525#1      AGATGTAACTGCGGCTTCCGCCCCATGGTCTATGACCTAATGGCGCGTCACTTAGCAACG 184
                      ********************* * *********  *                   *  **

consensus_8525#0      GAGG---AAGGACG-AATATCTGTAGTTGCACACCTCGCGCATGTCTAT-GTCGCGTCTG 655
consensus_8525#1      GAGGGCGAAGGACATGATCTTGCTAAGTTTGTGTACAACCTCCGGCCGTCATCGTTTCTA 244
                      ****   ******   ** *   **  *          *    * *  *  ***  *** 

consensus_8525#0      CAGACTGGCACTCTGGTGCAAAGAATCCNGTACCATCTGACTTNNNNNNNNNNNCNGNNN 715
consensus_8525#1      ATAGTCGCCCGTCCTGCG-AAGACATTGCGCACCTCCTTGTGGTGGCAGAAAAGAATATC 303
                            * *  **  * * **   **   * ***  **                      

consensus_8525#0      NNNNNNNNNNAACTTGTTGACATTCCATAAA----------------- 746
consensus_8525#1      CCGGTTACCCCATTTCTTGAACTCTGTTGGACTATCCCAATAAAAATA 351
                                 * ** ****  *    *  *