cluster # 8527

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Schistosoma mansoni
cluster # 8527 cluster # 8527 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8527#0 length = 627 sequences # 3

consensus_8527#1 length = 542 sequences # 3
consensus_8527#2 length = 283 sequences # 1

consensusID : consensus_8527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 627
fasta sequence

                              [TCAATTGACTTATCACCCTTAAATTTGTTTACTATACA-TATGTGTGTAATGA-TAGGTCTACAATGACATAAAAGGAATAATGAATACAATATAATAATAATAAGAAGAATAATTTATTTGTGCATTCCTATGTTTGATCCCGTGTTTATTATGATTCAGTTATTCTTTTTGAATCGACAACTGAATCTCTATGTTAATGTGGTATGGCAACTCGAACTGATGTACGTACGTACGAAGTTCTACGTCGTGACTGACTGATTCTTACAACAACAA---------CAAAAAAAGTGTTCTGGTGTACCTGTTTTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTAATCATTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTATCTCTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATACTACTTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTAATACTATTACTCATACTACTACTACTCATACTACTACCACTACTACTACTACTCATACCGCTTACAATTCATTAGAAATCTTAAGTAATA]

[+] EMBL AI976488             [TCAATTGACTTATCACCCTTAAATTTGTTTACTATACA TATGTGTGTAATGA TAGGTCTACAATGACATAAAAGGAATAATGAATACAATATAATAATAATAAGAAGAATAATTTATTTGTGCATTCCTATGTTTGATCCCGTGTTTATTATGATTCAGTTATTCTTTTTGAATCGACAACTGAATCTCTATGTTAATGTGGTATGGCAACTCGAACTGATGTACGTACGTACGAAGTTCTACGTCGTGACTGACTGATTCTTACAACAACAA         CAAAAAAAGTGTTCTGGTGTACCTGTTTTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTAATCATTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTATCTCTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATACTACTTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTAATACTATTACTCATACTACTACTACTCATACTACTACCACTACTACTACT                                        ]
[+] EMBL BF936701             [          TATCACCCTTAAATTTGTTTACTATACACTATGTGTGTAATGACTAGGTCTACAATGACATAAAAGGAATAATGAATACAATATAATAATAATAAGAAGAATAATTTATTTGTGCATTCCTATGTTTGATCCCGTGTTTATTATGATTCAGTTATTCTTTTTGAATCGACAACTGAATCTCTATGTTAATGTGGTATGGCAACTCGAACTGATGTACGTACGTACGAAGTTCTACGTCGTGACTGACTGATTCTTACAACAACAA         CAAAAAAAGTGTTCTGGTGTACCTGTTTTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTAATCATTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTATCTCTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATACTACTTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTAATACTATTACTCATACTACTACTACTCATACTACTACCACTACTACTACTACTCATACCGCTTACAATTCATTAGAAATCTTAAGTAATA]
[-] EMBL CD088308             [                                                                                                                                                                                                                        AACTGATGTACGTACGTACGAAGTTCTACGTTGTGTCTGACTGATTCTTACAACAACAACAACAACAGCAAAAAAAGTGTTCTGGTGTACCTGTTTTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTAATCACTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTATCTCTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATACTACTTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTAATACTATTACTCATACTACTACTACTCATACTACTAC                                                     ]




>consensus_8527#0
TCAATTGACTTATCACCCTTAAATTTGTTTACTATACATATGTGTGTAATGATAGGTCTA
CAATGACATAAAAGGAATAATGAATACAATATAATAATAATAAGAAGAATAATTTATTTG
TGCATTCCTATGTTTGATCCCGTGTTTATTATGATTCAGTTATTCTTTTTGAATCGACAA
CTGAATCTCTATGTTAATGTGGTATGGCAACTCGAACTGATGTACGTACGTACGAAGTTC
TACGTCGTGACTGACTGATTCTTACAACAACAACAAAAAAAGTGTTCTGGTGTACCTGTT
TTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTAATC
ATTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTATCT
CTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATACTAC
TTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTAATA
CTATTACTCATACTACTACTACTCATACTACTACCACTACTACTACTACTCATACCGCTT
ACAATTCATTAGAAATCTTAAGTAATA

consensusID : consensus_8527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 542
fasta sequence

                              [ATGACTTACTTC-ACTGTAGCATAGGCCGCCGACAAGCATTCTACAACCCAATCTTTCCTGGACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAGTTTCCATTTCTCGGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGATTCCATGTGAGGGCTTGTTTTGTGACACAGTTGGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACTGAAATCTGGTTTATTCTGTCCCACAGTGGGTTGCTGCTGATAGTGTCTGGCCAACTCGCTAAAAAAAAGCTAACCAGAAAACATATTATTCAAAAATATTGATAGGTTAAACATACTAATTCTCTTCGTATCTATGGGTATAATGATGATGATGATGATGAGCATATTATTAATAATAATAAAGGTGAAATAAATAATTTCATTGTTGAAACATGAAACAATGGTCAGTATTGTGATTTTAATTGGCAATTATATTTTCTCCTTAATATGAGAAAGT]

[+] EMBL CD084737             [ATGACTTACTTCAACTGTAGCATAGGCCGTCGACAAGCATTCTACAACCCAATCTTTCCTGGACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAGTTTCCATTTCTCGGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGATTCCATGTGAGGGCTTGTTTTGTGACACAGTTGGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACTGAAATCTGGTTTATTCTGTCCCACAGTGGGTTGCTGCTGATAGTGTCTGGCCAACTCGCTAAAAAAAAGCTAACCAGAAAACATATTATTCAAAAATATTGATAGGTTAAACATACTAATTCTCTTCGTATCTATGGGTATAATGATGATGATGATGATGAGCATATTATTAATAATAATAAAGGTGAAATAAATAATTTCATTGTTGAAACATGAAACAATGGTCAGTATTGTGATTTTAATTGGCAATTATATTTTCTCCTTAATATGAGAAAGT]
[+] EMBL CD084802             [    CTTACTTC AATGTAGCATAGGCCGCCGACAAGCATTCTACAACCCAATCTTTCCTGGACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAGTTTCCATTTCTCGGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGATTCCATGTGAGGGCTTGTTTTGTGACACAGTTGGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACTGAAATCTGGTTTATTCTGTCCCACAGTGGGTTGCTGCTGATAGTGTCTGGCCAACTCGCTAAAAAAAAGCTAACCAGAAAACATATTATTCAAAAATATTGATAGGTTAAACATACTAATTCTCTTCGTATCTATGGGTATAATGATGATGATGATGATGAGCATATTATTAATAATAATAAAGGTGAAATAAATAATTTCATTGTTGAAACATGAAACAATGGTCAGTATTGTGATTTTAATTGGCAATTATATTTTCTCCTTAATATGAGAAA  ]
[+] EMBL CD084749             [    CTTACTTC ACTGTAGCATAGGCCGCCGACAAGCATTCTACAACCCAATCTTTCCTGGACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAGTTTCCATTTCTCGGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGATTCCATGTGAGGGCTTGTTTTGTGACACAGTTGGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACTGAAATCTGGTTTATTCTGTCCCACAGTGGGTTGCTGCTGATAGTGTCTGGCCAACTCGCTAAAAAAAAGCTAACCAGAAAACATATTATTCAAAAATATTGATAGGTTAAACATACTAATTCTCTTCGTATCTATGGGTATAATGATGATGATGATGATGAGCATATTATTAATAATAATAA                                                                                               ]




>consensus_8527#1
ATGACTTACTTCACTGTAGCATAGGCCGCCGACAAGCATTCTACAACCCAATCTTTCCTG
GACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAGTTTCCATTTC
TCGGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGATTCCATGTGAG
GGCTTGTTTTGTGACACAGTTGGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGTG
CTTCTTCCTGATTTCTTCCTCCACTGAAATCTGGTTTATTCTGTCCCACAGTGGGTTGCT
GCTGATAGTGTCTGGCCAACTCGCTAAAAAAAAGCTAACCAGAAAACATATTATTCAAAA
ATATTGATAGGTTAAACATACTAATTCTCTTCGTATCTATGGGTATAATGATGATGATGA
TGATGAGCATATTATTAATAATAATAAAGGTGAAATAAATAATTTCATTGTTGAAACATG
AAACAATGGTCAGTATTGTGATTTTAATTGGCAATTATATTTTCTCCTTAATATGAGAAA
GT

consensusID : consensus_8527#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence

                              [ATAGTAGTTCTGCGGACGGAGGCTACGGTGGTCAAGGTGGATATGACGGTTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG]

[+] EMBL CD145890             [ATAGTAGTTCTGCGGACGGAGGCTACGGTGGTCAAGGTGGATATGACGGTTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG]




>consensus_8527#2
ATAGTAGTTCTGCGGACGGAGGCTACGGTGGTCAAGGTGGATATGACGGTTCAGGAGAAA
CGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAA
GAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGG
AGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAG
TTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8527#0      TCAATTGACTTATCACCCTTAAATTTGTTTACTATACATATGTGTGTAATGATAGGTCTA 60
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      CAATGACATAAAAGGAATAATGAATACAATATAATAATAATAAGAAGAATAATTTATTTG 120
consensus_8527#1      --ATGACTTACTT----CACTG--TAGCATAGGCCGCCGACAAGCATTCTA--CAACCCA 50
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      TGCATTCCT--ATGTTTGATCCCGTGTTTATTATGATTCAGTT-ATTCTTTTTGAATCGA 177
consensus_8527#1      ATCTTTCCTGGACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAG 110
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      CAACTGAATCTCTATGTTAATGTGGTATGGCAACTCGAACTGATGTACGTACGTACGAAG 237
consensus_8527#1      TTTCCATTTCTC-GGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGA 169
consensus_8527#2      ---------------------------------------ATAGTAGTTCTGCGGACGGAG 21
                                                              *  *       *   *    

consensus_8527#0      TTCTACGTCGTGACTGACTGATTCTTACAACAACAACAAAAAAAGTGTTCTGGTGTACCT 297
consensus_8527#1      TTCCATGTGAGGGCTTGTT-----TTGTGACA-CAGTTGGGTGATTTCCTCAATGTGTGT 223
consensus_8527#2      G-CTACGGTG-GTCAAGGTGGATATGACGGTT-CAGGAGAAACGAAGGAGGAGAAGACGA 78
                        * * *    * *    *     *        **                         

consensus_8527#0      GTTTTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTA 357
consensus_8527#1      CCTATCCACTTCCAGTGCTTC---TTCCTGATTTCTTCCTCCACTGA--AATCTGGTTTA 278
consensus_8527#2      ACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTG 138
                            *     *           *     *    *          *           * 

consensus_8527#0      ATCATTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTA 417
consensus_8527#1      TTCTGTCCCACAGTGGGTTGCTGCTGATA-GTGTCTGGCCAACTCGCTAAAAAAAAGCTA 337
consensus_8527#2      A-CGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCAC 197
                        *   *   *      *   *  ** *  *         *       ** *   * *  

consensus_8527#0      TCTCTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATAC 477
consensus_8527#1      ACCAGAAAACATATTATTCAAAA--ATATTGATAGGTTAAACA--TACTAATTCTCTTCG 393
consensus_8527#2      TCTCGGAC---CACTGGGCGAATCGACGACACCTGGAGAAGAGG-AGTTGGTG--AACGT 251
                       *          * *     *             *    *        *  *        

consensus_8527#0      TACTTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTA 537
consensus_8527#1      TATCTATGGGTATAATGATGATGATGATGATGAGCATATTA-TTAATAATAATAAAGGTG 452
consensus_8527#2      GACGGACAAACAGGGTGTAGTTGTTGGTCAGG---------------------------- 283
                       *   *         *     *  *    *                              

consensus_8527#0      ATACTATTACTCATACTACTACTAC-TCATACTACTACCACTACTACTACTACTCATACC 596
consensus_8527#1      AAATAAATAATTTCATTGTTGAAACATGAAACAATGGTCAGTATTGTGATTTTAATTGGC 512
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      GCTTACAATTCATTAGAAATCTTAAGTAATA 627
consensus_8527#1      AATTATATTTTCTCCTTAATATGAGAAAGT- 542
consensus_8527#2      -------------------------------