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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1393 fasta sequence
[CAACTTTATTATGATATCAGAGGTAGGATCAATTCATACGTATGAGCACAAACCAATAAATTAAATCAAATCAAATATAATGAAGTATGAAAATGATCAACTCTTCTTTGAGCCGAACACATACACACACACACAGTAAAAGAAAACACAACGAAACAGAACAGAAACAAAAATCACTTCAAGTGAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTTATGGGTGATGAAAACAGAAATGAGCAACATAGGTACCTAACTACTATCACATACACTCACACATACATACGTTCAACTAGAACCGCAAGTATCATGTACACTGTGCAGACCAATGTTCATCCTGTTGTGCTAACGAGGTATGGCAACTTGGACCGATGCATAAATGTGCCTGGTTCTACGTTGCAGCTGACTGACATTGTGCAGATCACTTTTTGTCTCATAGCCGAATACAATGTAAGAATAAAGCAAAATCATCCAAATGAATCACACATGAAACGAAGATAATAATGATAATAATAACTGAAACTACTACTGAAATTATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAACCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAAC--AAAAAAGAAAACAATATCCACAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAATTCTAGCAGTAAATATGTTATGTCAACATCATTTAATTTCGCTGCCATGTGTAAAGGAGTTGTCAATCGTACTCCACAATTCGGGTCTGCACCTTTAGAAAGCAGAAGGTAAACACCAGCATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGA-CCATTGCGTTCAGGAGAATTTAAGCTTGCACCA-GCGTCTATCAAAACCTTCATT-GCATTTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCAATATGATGGTGGATTAACATCAACCTTACTTCTTAATAAAAGGGAAATTATCTCAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCA]
[+] EMBL CD077128 [CAACTTTATTATGATATCAGAGGTAGGATCAATTCATACGTATGAGCACAAACCAATAAATTAAATCAAATCAAATATAATGAAGTATGAAAATGATCAACTCTTCTTTGAGCCGAACACATACACACACACACAGTAAAAGAAAACACAACGAAACAGAACAGAAACAAAAATCACTTCAAGTGAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTTATGGGTGATGAAAACAGAAATGAGCAACATAGGTACCTAACTACTATCACATACACTCACACATACATACGTTCAACTAGAACCGCAAGTATCATGTACACTGTGCAGACCAATGTTCATCCTGTT ]
[-] EMBL CD078464 [ GAAACAAAAATCNCTTCAAGTAAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTCATGGGTGATGAAAACAGAAATGAGCAACATAAGTACCTAACTACTATCACATACACACACACATACATACGTACAACTAGAACCGCAAGTATCATATACACTGTGCAGACCAATGTTCATCCTGTTGTGCTAACGAGGTATGGCAACTTGGACCGATGCATAAATGTGCCTGGTTCTACGTTGCAGCTGACTGACATTGTGCAGATCACTTTTTGTCTCATAGCCGAATACAATGTAAGAATAAAGCAAAATCATCCAAATGAATCACACATGAAACGAAGATAATAATGATAATAATAACTGAAACTACTACTGAAATTATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAACCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAACAAAAAAAAGAAAACAATATCCACAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGA ]
[+] EMBL CD169394 [ AATAATGATAATAATAACTGAAACTACTACTGAAATTATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAACCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAAC AAAAAAGAAAACAATATCCACAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAATTCTAGCAGTAAATATGTTATGTCAACATCATTT ]
[-] EMBL CD068666 [ AGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTC TTATCTACAGAAATCGGAGATGC CCG ATTCTAGCAGTAAATATGTTATG C ACATCA TTAAT ]
[+] EMBL CD129272 [ TTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAATTCTAGCAGTAAATATGTTATGTCAACATCATTTAATTTCGCTGCCATGTGTAAAGGAGTTGTCAATCGTACTCCACAATTCGGGTCTGCACCTTTAGAAAGCAGAAGGTAAACACCAGCATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGA CCATTGCGTTCAGGAGAATTTAAGCTTGCACCA GCGTCTATCAAAACCTTCATT GCATTTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCAATATGATGGTGGATTAACATCAACCTTACTTCTTAATAAAAGGGAAATTATCTCAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCA]
[-] EMBL BF936411 [ AAGCAGAAGGTAACCACCAGCATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGACCCATTGCGTTCAGGAGAATTTAAGCTTGCACCAGGCGTCTATCAAAACCTTCATTGGCATTTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCAA ATGA GGTGGATTAACATCAACCTTACTTCTTAATAAAAGGGAAATTATCTCAGCTGATC ]
consensusID : consensus_8532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence
[AGAAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCATTCGCATGAACACCGCTATCTAATAAAAGACGCACAGCTTTAACATTTCCTAATAAACAGGCATGGTGAAGCAACGTATTGTTGTCTGCATCACGAGAATGTATATTGAATGTTTGCAAAAGGTTTTGGAGGTCATCATTGTCACCTGACTTCAGGATTCTGATTGCATCAATCATTTGCTTAATTTCAATCCTTTTACATCACCGAGACTTAGTAGCAAAAAAATTAAGCTTTCCGGAGAATTTAAGCTTGCACCAGCGTCTATCANAACCTTCATTGCATCTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCCATATGATGGTGGGATTACATCACCTTTACTTTCTAATAGAA]
[+] EMBL CD181698 [AGAAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCATTCGCATGAACACCGCTATCTAATAAAAGACGCACAGCTTTAACATTTCCTAATAAACAGGCATGGTGAAGCAACGTATTGTTGTCTGCATCACGAGAATGTATATTGAATGTTTGCAAAAGGTTTTGGAGGTCATCATTGTCACCTGACTTCAGGATTCTGATTGCATCAATCATTTGCTTAATTTCAATCCTTTTACATCACCGAGACTTAGTAGCAAAAAAATTAAGCTTTCCGGAGAATTTAAGCTTGCACCAGCGTCTATCANAACCTTCATTGCATCTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCCATATGATGGTGGGATTACATCACCTTTACTTTCTAATAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8532#0 CAACTTTATTATGATATCAGAGGTAGGATCAATTCATACGTATGAGCACAAACCAATAAA 60
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 TTAAATCAAATCAAATATAATGAAGTATGAAAATGATCAACTCTTCTTTGAGCCGAACAC 120
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 ATACACACACACACAGTAAAAGAAAACACAACGAAACAGAACAGAAACAAAAATCACTTC 180
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 AAGTGAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTTATGGGTGATGAAAACAGAAA 240
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 TGAGCAACATAGGTACCTAACTACTATCACATACACTCACACATACATACGTTCAACTAG 300
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 AACCGCAAGTATCATGTACACTGTGCAGACCAATGTTCATCCTGTTGTGCTAACGAGGTA 360
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 TGGCAACTTGGACCGATGCATAAATGTGCCTGGTTCTACGTTGCAGCTGACTGACATTGT 420
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 GCAGATCACTTTTTGTCTCATAGCCGAATACAATGTAAGAATAAAGCAAAATCATCCAAA 480
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 TGAATCACACATGAAACGAAGATAATAATGATAATAATAACTGAAACTACTACTGAAATT 540
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 ATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAA 600
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 CCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAACAAAAAAGAAAACAATATCCA 660
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 CAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGAT 720
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 AGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGT 780
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 GACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTC 840
consensus_8532#1 ------------------------------------------------------------
consensus_8532#0 TTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGA 900
consensus_8532#1 -----------------------------------AGAAGCTGATCCGCTTAGTGCTGCA 25
* ** * * * * * *
consensus_8532#0 TTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATT 960
consensus_8532#1 TCGCAA-ATTGGAGTCTG--TCCATCAATATTTGAGGCATTCGCATGA-ACACCGCTATC 81
* * ** **** ** * * * **** * * * * * ** ***
consensus_8532#0 TGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAA 1020
consensus_8532#1 TAATAAAAGACGCACAGCTTTAACATT-TCCTAATAAACAGGCAT-GGTGAAGCAACGTA 139
* * * * * * ** ** ** * ** **** ** ** ** *** ** *
consensus_8532#0 TTCTAGCAGTAAATATGTTATGTCAACAT-CATTTAATTTCGCTGCCATGTGTAAAGGAG 1079
consensus_8532#1 TTGTTGTC-----TGCATCACGAGAATGTATATTGAATGTT--TGCAAAAGGTTTTGGAG 192
** * * * * * * ** * *** *** * *** * ** ****
consensus_8532#0 TTGTCAATCGTACTCCACAATTCGGGTCTGCACCTTTAGAAAGCAGAAGGTAAACACCAG 1139
consensus_8532#1 GTCATCATTGT-CACCTGACTTCAGGATTCTGATTGCATCAATCATTTGCTTAATTTCA- 250
* ** ** * ** * *** ** * * * ** ** * * ** **
consensus_8532#0 CATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGACCATTGCGTTCAGGAGAAT 1199
consensus_8532#1 ------ATCCTTTTACATCACCGAGACTTAGTAGCAAAAAAATTAAGCTTTCCGGAGAAT 304
*** ** * * * * *** * *** * ** *** *******
consensus_8532#0 TTAAGCTTGCACCAGCGTCTATCAAAACCTTCATTGCATTTATAGATTCATTCTGTGTAG 1259
consensus_8532#1 TTAAGCTTGCACCAGCGTCTATCANAACCTTCATTGCATCTATAGATTCATTCTGTGTAG 364
************************ ************** ********************
consensus_8532#0 CATAGATTAACGGAGAACCCCAATATGATGGTGGATTAACATCAACCTTACTTCTTAATA 1319
consensus_8532#1 CATAGATTAACGGAGAACCCCCATATGATGGTGGGATTACATCACCTTTACTTTCTAATA 424
********************* ************ * ****** * ****** *****
consensus_8532#0 AAAGGGAAATTATCTCAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCAT 1379
consensus_8532#1 GAA--------------------------------------------------------- 427
**
consensus_8532#0 CAATATTTGAGGCA 1393
consensus_8532#1 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||