cluster # 8533

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Schistosoma mansoni
cluster # 8533 cluster # 8533 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8533#0 length = 849 sequences # 6

consensus_8533#1 length = 242 sequences # 1

consensusID : consensus_8533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 849
fasta sequence

                              [CAGCCGCGCTTTTTGACTTAAACGATTGTAGCAAGCTATATTTTGACGTTCAATTGGGAGCAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGTAAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACATCATAACCTACCACTAATACGTCCTTCATGCCAGATTTATGTTTATTGGAGAATCAACATTTCTCTTTCCTGCCATATGTGAAATTCTGATCTTGGATCATGATGAACACAATTCTATCGTTCAGTCAAGTGAAAATTTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATCAAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTGTCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAATTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCTTCATTGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTNTGGTAAGTATTTCTCGTGTTGTGATGACTTCGTAGGTGCCATATGAAGCTTCAATCTCTGATTGGAAGCTACTGTTATTATTTTAATCTGAATGAAACAAAAGCTTCTTTCTTTNTTCTAGGCTGAGAAA-CGTGAACTACCCGTTTCG-TTG-AAGACTATNCTTACGAA-TGCGCATGTACTCTATGACA-TTTNCATATAAA]

[+] EMBL CD131969             [CAGCCGCGCTTTTTGACTTAAACGATTGTAGCAAGCTATATTTTGACGTTCAATTGGGAGCAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGTAAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD131935             [CAGCCGCGCTTTTGGACTTAAACGATTGTAGCAAGCTATATTTTGACGTTCAATTGGGAGCAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGTAAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD079491             [                           GTAGCAAGCTATATTTTGACGTTCAATTGGGAGCAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGTAAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACATCATAACCTACCACTAATACGTCCTTCATGCCAGATTTATGTTTATTGGAGAATCAACATTTCTCTTTCCTGCCATATGTGAAATTCTGATCTTGGATCATGATGAACACAATTCTATCGTTCAGTCAAGTGAAAATTTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATCAAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTGTCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAATTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCTTCATTGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTNTGGTAAGTATTTCTCGTGTTGTGATGACTTCGTAGGTGCCATATGAAGCTTCAATCTCTGATTGGAAGCTACTGTTATTATTTTAATCTGAATGAAACAAAAGCTTCTTTCTTTNTTCTAGGCTGAGAAA CGTGAACTACCCGTTTCG TTG AAGACTATNCTTACGAA TGCGCATGTACTCTATGACA TTTNCATATA  ]
[+] EMBL SMAA17939            [                                                 TCAACTGGGAGCAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGTAAAAGCAAACTTACAAAAGTTGGAGGACACCCTGACTTGTACCTCATAACCTACCACTAATACGTCCTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD073760             [                                                                                                                                                                                        TCCTTCATGCCAGATTTATG TTATTGGAGAATCAACATTTCTCTTTCCTGCCATATGTGAAATTCTGATCTTGGATCATGATGAACACAATTCTATCGTTCAGTCAAGTGAAAATTTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATCAAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTGTCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAATTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCTTCATTGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTTTGGTAAGTATTTCTCGTGTTGTGATGACTTCGTAGGTGCCATATGAAGCTTCAATCTCTGATTGGAAGCTACTGTTATTATTTTAATCTGAATGAACAAAAAGCTTCTTTCTTTTTTCTAGGCTGAGAAACCGTGAACTA CCGTTTCGTTTGAAAGACTATCCTTACGAATTGCGCATGTACTCTATGACATTTTACATATAAA]
[+] EMBL CD077967             [                                                                                                                                                                                                                                                                                              AGTCAAGTGAAAATTTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATCAAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTGTCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAATTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCT                                                                                                                                                                                                                                                                                                                                              ]




>consensus_8533#0
CAGCCGCGCTTTTTGACTTAAACGATTGTAGCAAGCTATATTTTGACGTTCAATTGGGAG
CAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGT
AAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACATCATAACCTACCACTAA
TACGTCCTTCATGCCAGATTTATGTTTATTGGAGAATCAACATTTCTCTTTCCTGCCATA
TGTGAAATTCTGATCTTGGATCATGATGAACACAATTCTATCGTTCAGTCAAGTGAAAAT
TTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATC
AAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTG
TCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAA
TTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCTTCATTGGTGTTCTCTCATCT
TCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATAC
CTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTNTGGTAAGTATT
TCTCGTGTTGTGATGACTTCGTAGGTGCCATATGAAGCTTCAATCTCTGATTGGAAGCTA
CTGTTATTATTTTAATCTGAATGAAACAAAAGCTTCTTTCTTTNTTCTAGGCTGAGAAAC
GTGAACTACCCGTTTCGTTGAAGACTATNCTTACGAATGCGCATGTACTCTATGACATTT
NCATATAAA

consensusID : consensus_8533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [ATATCATTATACACCATCTTCATGGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTTTGGCTGAGAAACCGTGAACTACCGTTTCGTTTGAAAGACTATCCTTACGAATTGCGCATGTACTCTATGACNNTTTCCATATAAAATATATATG]

[-] EMBL SMAA69927            [ATATCATTATACACCATCTTCATGGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTTTGGCTGAGAAACCGTGAACTACCGTTTCGTTTGAAAGACTATCCTTACGAATTGCGCATGTACTCTATGACNNTTTCCATATAAAATATATATG]




>consensus_8533#1
ATATCATTATACACCATCTTCATGGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGT
GAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATG
TGGGACACGGAACAATTAGAGCAGATTTTGGCTGAGAAACCGTGAACTACCGTTTCGTTT
GAAAGACTATCCTTACGAATTGCGCATGTACTCTATGACNNTTTCCATATAAAATATATA
TG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8533#0      CAGCCGCGCTTTTTGACTTAAACGATTGTAGCAAGCTATATTTTGACGTTCAATTGGGAG 60
consensus_8533#1      ------------------------------------------------------------
                                                                                  

consensus_8533#0      CAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGT 120
consensus_8533#1      ------------------------------------------------------------
                                                                                  

consensus_8533#0      AAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACATCATAACCTACCACTAA 180
consensus_8533#1      ------------------------------------------------------------
                                                                                  

consensus_8533#0      TACGTCCTTCATGCCAGATTTATGTTTATTGGAGAATCAACATTTCTCTTTCCTGCCATA 240
consensus_8533#1      ------------------------------------------------------------
                                                                                  

consensus_8533#0      TGTGAAATTCTGATCTTGGATCATGATGAACACAATTCTATCGTTCAGTCAAGTGAAAAT 300
consensus_8533#1      ------------------------------------------------------------
                                                                                  

consensus_8533#0      TTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATC 360
consensus_8533#1      ------------------------------------------------------------
                                                                                  

consensus_8533#0      AAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTG 420
consensus_8533#1      ------------------------------------------------------------
                                                                                  

consensus_8533#0      TCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAA 480
consensus_8533#1      ------------------------------------------------------------
                                                                                  

consensus_8533#0      TTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCTTCATTGGTGTTCTCTCATCT 540
consensus_8533#1      ---------------------ATATCATTATACACCATCTTCATGGGTGTTCTCTCATCT 39
                                           *********************** ***************

consensus_8533#0      TCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATAC 600
consensus_8533#1      TCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATAC 99
                      ************************************************************

consensus_8533#0      CTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTNTGGTAAGTATT 660
consensus_8533#1      CTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTTTGGCTGAGAAA 159
                      ************************************************ ***     *  

consensus_8533#0      TCTCGTGTTGTGATGACTTCGTAGGTGCCATATGAAGCTTCAATCTCTGATTGGAAGCTA 720
consensus_8533#1      CCGTGAACTACCGTTTCGTTTGAAAGACTATCC----TTACGAATTGCGCATGTA---CT 212
                       *  *   *    *  * *   *    * **       * * *  *  *  ** *     

consensus_8533#0      CTGTTATTATTTTAATCTGAATGAAACAAAAGCTTCTTTCTTTNTTCTAGGCTGAGAAAC 780
consensus_8533#1      CTATGACNNTTTCCATATAAAATATATATG------------------------------ 242
                      ** * *   ***  ** * **  * * *                                

consensus_8533#0      GTGAACTACCCGTTTCGTTGAAGACTATNCTTACGAATGCGCATGTACTCTATGACATTT 840
consensus_8533#1      ------------------------------------------------------------
                                                                                  

consensus_8533#0      NCATATAAA 849
consensus_8533#1      ---------