cluster # 8534

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8534 cluster # 8534 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8534#0 length = 1213 sequences # 3

consensus_8534#1 length = 592 sequences # 4

consensusID : consensus_8534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1213
fasta sequence

                              [GGTTGAATTTGGAACTTTTTGCATTTATAAAACATTTTACTAAGTATTTTAAGTTAGTTTAACATCTCTTTTTTGTCATACAAAATCTGGAAATTATAAAACAACACTTTTCTAGATTACAGTATGATCCGAAAACTGGTCGCAGTTATGATGCTGAAGGTGTTGACATTGTTTTTCCAGGATGGGGTGAAACGTGGTCAATTGAGAATCTAGATAAAACACCAAATATGTTTTCTAAATATTTTGGTTCATTGGTTTATGTTCTAAGAAAAGATCCGTTTTATGTATCAAATTTTACAATGAGAGGTGCACCATATGATTTTAGAAAAGCCCCAAATGAAAACTATGGACTTTTCGATAAATTAAAAGCCTTGATTGAGGAAACTTATGAAAATGCAAAACAAAGACCCGTTGTCCTACTGCCACACAGTATGGGATGCTTATATGCTCAGTGGTTTTTGAAAAAATGTGAGATTCCATGGAAAAAGAAGTATATAAAATCCCTGGTGTTTTCTAGCTGTCCATTTGGGGGTTCTGTGAAAACAGTGAAAGTTGAAGCCAGTGGTGATAACTTTGGGGTATTTCTACGTAGTCCATTAAGTTTTCGACACGTCCAGCGTTCTATGCCATCTCTTACTTTCTTATTTCCTGATTCTCGTTTATGGCCATCATCGGAGCCACTTATTATAACACCTACAACCAACTATAGCTCAGCTGATTACGAACGTTTCTTCAAAGATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTCACTCTCTTGTTGATGGATTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATGGTTCACATTTATCTACTACCGAAAAAATTGCCTATTCTGCACCCAGTTNTTTTTTATAGTGGTTTCCCAGATCAAGTACCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATACGAAGTTTAGAATACTGCANNNAATGGCCCNGAATTAACATTACGTATTACCTGGAGCTGAGCATGNTCGTATTCTTAGTGATATAAGACATATAACATTATNCTCAAAATCCTTATGCAANTTNACTCATGGNTAAACATAGATTTGATGCCTGAGATAATACTGGATAATGACGTCTGTAATGAAGCCATACTAAGAACTATCGACAGTTTGTATTANACGCTGTTTGGNATTTATGNTNTGAAAAATACA]

[+] EMBL CD079185             [GGTTGAATTTGGAACTTTTTGCATTTATAAAACATTTTACTAAGTATTTTAAGTTAGTTTAACATCTCTTTTTTGTCATACAAAATCTGGAAATTATAAAACAACACTTTTCTAGATTACAGTATGATCCGAAAACTGGTCGCAGTTATGATGCTGAAGGTGTTGACATTGTTTTTCCAGGATGGGGTGAAACGTGGTCAATTGAGAATCTAGATAAAACACCAAATATGTTTTCTAAATATTTTGGTTCATTGGTTTATGTTCTAAGAAAAGATCCGTTTTATGTATCAAATTTTACAATGAGAGGTGCACCATATGATTTTAGAAAAGCCCCAAATGAAAACTATGGACTTTTCGATAAATTAAAAGCCTTGATTGAGGAAACTTATGAAAATGCAAAACAAAGACCCGTTGTCCTACTGCCACACAGTATGGGATGCTTATATGCTCAGTGGTTTTTGAAAAAATGTGAGATTCCATGGAAAAAGAAGTATATAAAATCCCTGGTGTTTTCTAGCTGTCCATTTGGGGGTTCTGTGAAAACAGTGAAAGTTGAAGCCAGTGGTGATAACTTTGGNGTATTTCTACGTAGTCCATTAAGTTTTCGACACGTCCAGCGTTCTATGCCATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD082120             [                                                                                                                                                                                                                                                                                                    TTTTACAATGAGAGTT  TCCTTATGATTTTA ACAAGCCCCAAATGAAAACTATGGACTTTTCGATAAATTAAAAGCCTTGATTGAGGAAACTTATGAAAATGCAAAACAAAGACCCGTTGTCCTACTGCCACACAGTATGGGATGCTTATATGCTCAGTGGTTTTTGAAAAAATGTGAGATTCCATGGAAAAAGAAGTATATAAAATCCCTGGTGTTTTCTAGCTGTCCATTTGGGGGTTCTGTGAAAACAGTGAAAGTTGAAGCCAGTGGTGATAACTTTGGGGTATTTCTACGTAGTCCATTAAGTTTTCGACACGTCCAGCGTTCTATGCCATCTCTTACTTTCTTATTTCCTGATTCTCGTTTATGGCCATCATCGGAGCCACTTATTATAACACCTACAACCAACTATAGCTCAGCTGATTACGAACGTTTCTTCAAAGATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTCACTCTCTTGTTGATGGATTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATGGTTCACATTTATCTACTACCGAAAAAATTGCCTATTCTGCACCCAGTTNTTTTTTATAGTGGTTTCCCAGATCAAGTACCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATACGAAGTTTAGAATACTGCANNNAATGGCCCNGAATTAACATTACGTATTACCTGGAGCTGAGCATGNTCGTATTCTTAGTGATATAAGACATATAACATTATNCTCAAAATCCTTATGCAANTTNACTCATGGNTAAACATAGATTTGATGCCTGAGATAATACTGGATAATGACGTCTGTAATGAAGCCATACTAAGAACTATCGACAGTTTGTATTANACGCTGTTTGGNATTTATGNTNTGAAAAATACA]
[+] EMBL CD185738             [                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGCTCAGTGGTTTTTGAAAAAATGTGAGATTCCATGGAAAAAGAAGTATATAAAATCCCTGGTGTTTTCTAGCTGTCCATTTGGGGGTTCTGTGAAAACAGTGAAAGTTGAAGCCAGTGGTGATAACTTTGGGGTATTTCTACGTAGTCCATTAAGTTTTCGACACGTCCAGCGTTCTATGCCATCTCTTACTTTCTTATTTCCTGATTCTCGTTTATGGCCATCATCGGAGCCACTTATTATAACACCTACAACCAACTATAGCTCAGCTGATTACGAACGTTTCTTCAAAGATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTCACTCTCTTGTTGATGGATTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATGGTTCACATTTATCTACTACCGAAAAAATTGCCTATTCTGCACCCAGTTTTTTTT                                                                                                                                                                                                                                                                                                                               ]




>consensus_8534#0
GGTTGAATTTGGAACTTTTTGCATTTATAAAACATTTTACTAAGTATTTTAAGTTAGTTT
AACATCTCTTTTTTGTCATACAAAATCTGGAAATTATAAAACAACACTTTTCTAGATTAC
AGTATGATCCGAAAACTGGTCGCAGTTATGATGCTGAAGGTGTTGACATTGTTTTTCCAG
GATGGGGTGAAACGTGGTCAATTGAGAATCTAGATAAAACACCAAATATGTTTTCTAAAT
ATTTTGGTTCATTGGTTTATGTTCTAAGAAAAGATCCGTTTTATGTATCAAATTTTACAA
TGAGAGGTGCACCATATGATTTTAGAAAAGCCCCAAATGAAAACTATGGACTTTTCGATA
AATTAAAAGCCTTGATTGAGGAAACTTATGAAAATGCAAAACAAAGACCCGTTGTCCTAC
TGCCACACAGTATGGGATGCTTATATGCTCAGTGGTTTTTGAAAAAATGTGAGATTCCAT
GGAAAAAGAAGTATATAAAATCCCTGGTGTTTTCTAGCTGTCCATTTGGGGGTTCTGTGA
AAACAGTGAAAGTTGAAGCCAGTGGTGATAACTTTGGGGTATTTCTACGTAGTCCATTAA
GTTTTCGACACGTCCAGCGTTCTATGCCATCTCTTACTTTCTTATTTCCTGATTCTCGTT
TATGGCCATCATCGGAGCCACTTATTATAACACCTACAACCAACTATAGCTCAGCTGATT
ACGAACGTTTCTTCAAAGATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTC
ACTCTCTTGTTGATGGATTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATG
GTTCACATTTATCTACTACCGAAAAAATTGCCTATTCTGCACCCAGTTNTTTTTTATAGT
GGTTTCCCAGATCAAGTACCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATA
CGAAGTTTAGAATACTGCANNNAATGGCCCNGAATTAACATTACGTATTACCTGGAGCTG
AGCATGNTCGTATTCTTAGTGATATAAGACATATAACATTATNCTCAAAATCCTTATGCA
ANTTNACTCATGGNTAAACATAGATTTGATGCCTGAGATAATACTGGATAATGACGTCTG
TAATGAAGCCATACTAAGAACTATCGACAGTTTGTATTANACGCTGTTTGGNATTTATGN
TNTGAAAAATACA

consensusID : consensus_8534#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 592
fasta sequence

                              [CCACTTATTATAACACCTACAACCAACTATAGCTCAGCTGATTACGAACGTTTCTTCAAAGATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTCACTCTCTTGTTGATGGATTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATGGTTCACATTTATCTACTACCGAAAAAATTGCCTATTCTGCACCCAG-TTTTTTTTATAGTGGTTTCCCAGATCAA-GTACCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATACGAAGTTTAGAATACTGCAAAAATTGGCCCGGAATTAAACATTACGTATTACCTGGAGCTGAGCATGTTCGTATTCTTAGTGATATAAGACATATTAACATTATTCTCAAAATCCTTAATGCAAATATAACTCATGGGTAAACATAAGATTTTGATGCCTGAAGATAAATTACTGGATTAAATGAACGTCATGTTAAATGAAGCCAATAAACTAAAGAAACATATCGAAACAAGTATTGATAATATAGAGCGGCTGTTTTTGTGTATTTTCAATTGTTTTCTGAAAAAAATATAACAATTTGACATACTT]

[-] EMBL BF936949             [CCACTTATTATAACACCTACAACCAACTATAGCTCAGCTGATTACGAACGTTTCTTCAAAGATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTCACTCTCTTGTTGATGGATTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATGGTTCACATTTATCTACTACCGAAAAAATTGCCTATTCTGCACCCAG TTTTTTTTATAGTGGTTTCCCAGATCAA GTACCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATACGAAGTTTAGAATACTGCAAAAATTGGCCCGGAATTAAACATTACGTATTACCTGGAGCTGAGCATGTTCGTATTCTTAGTGATATAAGACATATTAACATTATTCTCAAAATCCTTAATGCAAATATAACTCATGGGTAAACATAAGATTTTGATGCCTGAAGATAAATTACTGGATTAAATGAACGTCATGTTAAATGAAGCCAATAAACTAAAGAAACATATCGAAACAAGTATTGATAATATAGAGCGGCTGTTTTTGTGTATTTTCAATTGTTTTCTGAAAAAAATATAACAATTTGACATACTT]
[-] EMBL BF936507             [                     ACCAACTATAGCTCAGCTGATTACGAACGTTTCTTCAAAGATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTCACTCTCTTGTTGATGGATTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATGGTTCACATTTATCTACTACCGAAAAAATTGCCTATTCTGCACCCAG TTTTTTTTATAGTGGTTTCCCAGATCAAGGTACCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATACGAAGTTTAGAATACTGCAAAAATTGGCCCGGAATTAAACATTACGTATTACCTGGAGCTGAGCATGTTCGTATTCTTAGTGATATAAGACATATTAACATTATTCTCAAAATCCTTAATGCAAATATAACTCATGGGTAAACATAAGATTTTGATGCCTGAAGATAAATTACTGGATTAAATGAACGTCATGTTAAATGAAGCCAATAAACTAAAGAAACATATCGAAACAAGTATTGATAATATAGAGCGGCTGTTTTTGTGTATTTTCAATTGTTTTCTGAAAAAAATATAACAATTTGACATACTT]
[-] EMBL CD075735             [                             TAGCTCAGCTGATTACGAACGTTTCTTCAAAGATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTCACTCTCTTGTTGATGGATTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATGGTTCACATTTATCTACTACCGAAAAAATTGCCTATTTTGCACCCAGTTTTTTTTTATAGTGGTTTCCCAGATCAA GTACCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATACGAAGTTTAGAATACTGCAAAAATTGGCCCGGAATTAAACATTACGTATTACCTGGAGCTGAGCATGTTCGTATTTTTAGTGATATAAGACATATTAACATTATTCTCAAAATCCTTAATGCAAATATAACTCATGGGTAAACATAAGATTTTGATGCCTGAAGATAAATTACTGGATTAAATGAACGTCATGTTAAATGAAGCCAATAAACTAAAGAAACATATCGAAACAAGTATTGATAATATAGAGCGGCTGTTTTTGTGTATTTTCAATTGTTTTTTGAAAAAAATATAACAATTTGAC      ]
[-] EMBL BF936205             [                                                                                                                        TTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATGGTTCACATTTATCTACTACCGAAAAAATTGCCTATTCTGCACCCAG TTTTTTTTATAGTGGTTTCCCAGATCAA GTACCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATACGAAGTTTAGAATACTGCAAAAATTGGCCCGGAATTAAACATTACGTATTACCTGGAGCTGAGCATGTTCGTATTCTTAGTGATATAAGACATATTAACATTATTCTCAAAATCCTTAATGCAAATATAACTCATGGGTAAACATAAGATTTTGATGCCTGAAGATAAATTACTGGATTAAATGAACGTCATGTTAAATGAAGCCAATAAACTAAAGAAACATATCGAAACAAGTATTGATAATATAGAGCGGCTGTTTTTGTGTATTTTCAATTGTTTTCTGAAAAAAATATAACAATTTGACATACTT]




>consensus_8534#1
CCACTTATTATAACACCTACAACCAACTATAGCTCAGCTGATTACGAACGTTTCTTCAAA
GATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTCACTCTCTTGTTGATGGA
TTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATGGTTCACATTTATCTACT
ACCGAAAAAATTGCCTATTCTGCACCCAGTTTTTTTTATAGTGGTTTCCCAGATCAAGTA
CCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATACGAAGTTTAGAATACTGC
AAAAATTGGCCCGGAATTAAACATTACGTATTACCTGGAGCTGAGCATGTTCGTATTCTT
AGTGATATAAGACATATTAACATTATTCTCAAAATCCTTAATGCAAATATAACTCATGGG
TAAACATAAGATTTTGATGCCTGAAGATAAATTACTGGATTAAATGAACGTCATGTTAAA
TGAAGCCAATAAACTAAAGAAACATATCGAAACAAGTATTGATAATATAGAGCGGCTGTT
TTTGTGTATTTTCAATTGTTTTCTGAAAAAAATATAACAATTTGACATACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8534#0      GGTTGAATTTGGAACTTTTTGCATTTATAAAACATTTTACTAAGTATTTTAAGTTAGTTT 60
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      AACATCTCTTTTTTGTCATACAAAATCTGGAAATTATAAAACAACACTTTTCTAGATTAC 120
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      AGTATGATCCGAAAACTGGTCGCAGTTATGATGCTGAAGGTGTTGACATTGTTTTTCCAG 180
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      GATGGGGTGAAACGTGGTCAATTGAGAATCTAGATAAAACACCAAATATGTTTTCTAAAT 240
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      ATTTTGGTTCATTGGTTTATGTTCTAAGAAAAGATCCGTTTTATGTATCAAATTTTACAA 300
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      TGAGAGGTGCACCATATGATTTTAGAAAAGCCCCAAATGAAAACTATGGACTTTTCGATA 360
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      AATTAAAAGCCTTGATTGAGGAAACTTATGAAAATGCAAAACAAAGACCCGTTGTCCTAC 420
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      TGCCACACAGTATGGGATGCTTATATGCTCAGTGGTTTTTGAAAAAATGTGAGATTCCAT 480
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      GGAAAAAGAAGTATATAAAATCCCTGGTGTTTTCTAGCTGTCCATTTGGGGGTTCTGTGA 540
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      AAACAGTGAAAGTTGAAGCCAGTGGTGATAACTTTGGGGTATTTCTACGTAGTCCATTAA 600
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      GTTTTCGACACGTCCAGCGTTCTATGCCATCTCTTACTTTCTTATTTCCTGATTCTCGTT 660
consensus_8534#1      ------------------------------------------------------------
                                                                                  

consensus_8534#0      TATGGCCATCATCGGAGCCACTTATTATAACACCTACAACCAACTATAGCTCAGCTGATT 720
consensus_8534#1      -----------------CCACTTATTATAACACCTACAACCAACTATAGCTCAGCTGATT 43
                                       *******************************************

consensus_8534#0      ACGAACGTTTCTTCAAAGATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTC 780
consensus_8534#1      ACGAACGTTTCTTCAAAGATATAAATTATACTATTGGCTATCAAATGTGGAAAGATACTC 103
                      ************************************************************

consensus_8534#0      ACTCTCTTGTTGATGGATTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATG 840
consensus_8534#1      ACTCTCTTGTTGATGGATTGGAAATGCCTACTGGTATTGATGATATTCATTGTATTCATG 163
                      ************************************************************

consensus_8534#0      GTTCACATTTATCTACTACCGAAAAAATTGCCTATTCTGCACCCAGTTNTTTTTTATAGT 900
consensus_8534#1      GTTCACATTTATCTACTACCGAAAAAATTGCCTATTCTGCACCCAGTTTTTTTT-ATAGT 222
                      ************************************************ ***** *****

consensus_8534#0      GGTTTCCCAGATCAAGTACCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATA 960
consensus_8534#1      GGTTTCCCAGATCAAGTACCTTTATTAATTCCTGGTGACGGAGATGGGACAGTCGGCATA 282
                      ************************************************************

consensus_8534#0      CGAAGTTTAGAATACTGCANNNAATGGCCCNGAATTAA-CATTACGTATTACCTGGAGCT 1019
consensus_8534#1      CGAAGTTTAGAATACTGCAAAAATTGGCCCGGAATTAAACATTACGTATTACCTGGAGCT 342
                      *******************   * ****** ******* *********************

consensus_8534#0      GAGCATGNTCGTATTCTTAGTGATATAAGACATAT-AACATTATNCTCAAAATCCTTA-T 1077
consensus_8534#1      GAGCATGTTCGTATTCTTAGTGATATAAGACATATTAACATTATTCTCAAAATCCTTAAT 402
                      ******* *************************** ******** ************* *

consensus_8534#0      GCAANT-TNACTCATGGNTAAACATAGA--TTTGATGCCTGA-GATAA--TACTGGAT-- 1129
consensus_8534#1      GCAAATATAACTCATGGGTAAACATAAGATTTTGATGCCTGAAGATAAATTACTGGATTA 462
                      **** * * ******** ********    ************ *****  ********  

consensus_8534#0      AATGA-CGTC-TGT--AATGAAGCCAT---ACTAAG---------------AACTATCGA 1167
consensus_8534#1      AATGAACGTCATGTTAAATGAAGCCAATAAACTAAAGAAACATATCGAAACAAGTATTGA 522
                      ***** **** ***  **********    *****                ** *** **

consensus_8534#0      CAGTTTGTATTANACGCTGTTTGGNATTT------ATGNTNTGAAAAATACA-------- 1213
consensus_8534#1      TAATATAGAGCGGCTGTTTTTGTGTATTTTCAATTGTTTTCTGAAAAAAATATAACAATT 582
                       * * *  *      * * **  * ****       *  * ******* * *        

consensus_8534#0      ----------
consensus_8534#1      TGACATACTT 592