These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 591 fasta sequence [AACAAACATCGAAATGGCTTTAGTTAGAATAATAATCTTGAATGAGAGAAGATAGCAGACAATTATACTTTTCTAAAAATACCCCAATAAAATAAAATCAATAATTAATTTACCGATTGTTTCAGCATCCGTTTCAACTGCTGAATCAGATCCACGAGCTAATATCTGGTATATTGCAGAAATTTCTAGTACCATAATATCTGGTTTAAAACCATAAGCAGCTTTATCACGTACATTTAGATCACGTTGTTTTGGTCCTACAAGTCTTGTCAAGAAATAATTTAGCATACAAGCCACTCGATCAACCAATATTGGATGTGTAATTAATTGTGAGCATAAAGTGATCACTCGACGTAATGTAGCAATAGTGTCTAATCCAAGCATAATATGATGTCGTGCTAAACGACCTGTATGTGCAAACAATGCTTCGTCTGAAGAAGATGATAATCTAATATAACAAGAAAATGATGATAAAGTATAAATATACAAACACACTGCACTTATCATAGATTGGTCTTAATTAGAGTATAACTGAAAGCCAAGGACCATCGGAATGTTTCGTTCTAGTATATGACTCTTCAACAGCTCATA] [+] EMBL CD111490 [AACAAACATCGAAATGGCTTTAGTTAGAATAATAATCTTGAATGAGAGAAGATAGCAGACAATTATACTTTTCTAAAAATACCCCAATAAAATAAAATCAATAATTAATTTACCGATTGTTTCAGCATCCGTTTCAACTGCTGAATCAGATCCACGAGCTAATATCTGGTATATTGCAGAAATTTCTAGTACCATAATATCTGGTTTAAAACCATAAGCAGCTTTATCACGTACATTTAGATCACGTTGTTTTGGTCCTACAAGTCTTGTCAAGAAATAATTTAGCATACAAGCCACTCGATCAACCAATATTGGATGTGTAATTAATTGTGAGCATAAAGTGATCACTCGACGTAATGTAGCAATAGTGTCTAATCCAAGCATAATATGATGTCGTGCTAAACGACCTGTATG ] [-] EMBL CD111184 [ CAGCATCCGTTTCAACTGCTGAATCAGATCCACGAGCTAATATCTGGTATATTGCAGAAATTTCTAGTACCATAATATCTGGTTTAAAACCATAAGCAGCTTTGTCACGTACATTTAGATCACGTTGTTTTGGTCCTACAAGTCTTGTCAAGAAATAATTTAGCATACAAGCCACTCGATCAACCAATATTGGATGTGTAATTAATTGTGAACATAAAGTGATCACTCGACGTAATGTAGCAATAGTGTCTAATCCAAGCATAATATGATGTCGTGCTAAACGACCTGTATGTGCAAACAATGCTTCGTCTGAAGAAGATGATAATCTAATATAACAAGAAAATGATGATAAAGTATAAATATACAAACACACTGCACTTATCATAGATTGGTCTTAATTAGAGTATAACTGAAAGCCAAGGACCATCGGAATGTTTCGTTCTAGTATATGACTCTTCAACAGCTCATA] consensusID : consensus_8537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [AATTTGTTCAAGGTATATGAAAGTAATTAGTAATGGATTGTAATTTCCTCTATTGAAGAGCATTGTTTTAAAGTAAATACAAACCAGGTATTTATTTTTGGGTTAAAGCAAGCTTTTATAGATTAAAATATAAACTCAAATGAGGGAGAAGACGAAAAATGATGAAAAATATCAACACAGAAAACTATAAGAAAAGAAAAAATACTAACCTCAAGAAATTCGTCTTTGCCACGTCTTAAATAACTAACAAGTTCCACAACATTATCAACCAAATATTCTGGTAAATCAGAAAGACAACCATGAGAAAATGGTGTTGAGTCAGAGGTAGAAGTAGTAATATTACTACTATCACTACTATTTTTATTTAGTATATCATTAGCCAATTTGACAAGTAAACGACAAGTGGTCACAGCAAATGACAATTGATCTTTTAATCGAGACATACACGACAAACTGGTAGATTGTTCTAAATACCGTGCAGTGCGTTCACGCATAAAACGACGTANAAAAATTACTTGNGAATCATTAGAATTATCCGATTCGTGTGGTTGCAATTGATCTTCTAACCG] [+] EMBL CD116148 [AATTTGTTCAAGGTATATGAAAGTAATTAGTAATGGATTGTAATTTCCTCTATTGAAGAGCATTGTTTTAAAGTAAATACAAACCAGGTATTTATTTTTGGGTTAAAGCAAGCTTTTATAGATTAAAATATAAACTCAAATGAGGGAGAAGACGAAAAATGATGAAAAATATCAACACAGAAAACTATAAGAAAAGAAAAAATACTAACCTCAAGAAATTCGTCTTTGCCACGTCTTAAATAACTAACAAGTTCCACAACATTATCAACCAAATATTCTGGTAAATCAGAAAGACAACCATGAGAAAATGGTGTTGAGTCAGAGGTAGAAGTAGTAATATTACTACTATCACTACTATTTTTATTTAGTATATCATTAGCCAATTTGACAAGTAAACGACAAGTGGTCACAGCAAATGACAATTGATCTTTTAATCGAGACATACACGACAAACTGGTAGATTGTTCTAAATACCGTGCAGTGCGTTCACGCATAAAACGACGTANAAAAATTACTTGNGAATCATTAGAATTATCCGATTCGTGTGGTTGCAATTGATCTTCTAACCG] consensusID : consensus_8537#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [TCGGCACGAGGGGTAGTGCAGCTGATGCAGCGATAGCTGCTTCTTCATCATCTACATCTACAAAATTCTTCATCACATCAACCTGGTTCCCACTTAAACAGTAGTGATAGTCAAACAGATATTGGTAATAATAGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTGCAACGGACACTCAAACTGCTGCTGTTGGATTTGAAGAAAAATTTCATTATCGACGTCCAATGTATGCTTGTTTAAGATATTGGTACGGTAAACCATTATATGATGTACAGTTTAAGCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTCTACAATTTTTATCACTTTTGGTGAATGATGCTATCTTTTTGTTAGATGAAGCCCTTAGTTTATTAGCCCAACTTAAACAAACTGAACGTGAAAGAGATAAATGTGGTGGGAGATTATCATCTTCTTCAGACGAAGCATTGTTTGCACATACAGGTCGTCTAGCACGACATC] [+] EMBL CD083808 [TCGGCACGAGGGGTAGTGCAGCTGATGCAGCGATAGCTGCTTCTTCATCATCTACATCTACAAAATTCTTCATCACATCAACCTGGTTCCCACTTAAACAGTAGTGATAGTCAAACAGATATTGGTAATAATAGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTGCAACGGACACTCAAACTGCTGCTGTTGGATTTGAAGAAAAATTTCATTATCGACGTCCAATGTATGCTTGTTTAAGATATTGGTACGGTAAACCATTATATGATGTACAGTTTAAGCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTCTACAATTTTTATCACTTTTGGTGAATGATGCTATCTTTTTGTTAGATGAAGCCCTTAGTTTATTAGCCCAACTTAAACAAACTGAACGTGAAAGAGATAAATGTGGTGGGAGATTATCATCTTCTTCAGACGAAGCATTGTTTGCACATACAGGTCGTCTAGCACGACATC] consensusID : consensus_8537#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 457 fasta sequence [TGAAGAATTTTGTGATGTAGATGATGAAGAAGCAGCTATCGCTGCATCAGCTGCACTACCAGCACTACCAACAACTCCAGTACCAGGTGATAATTCTATAGAGACAAATGCTGTAAGCAATGCTCTGACAGCATTACTCAATATAGGATCATTTGTGATTTCTGGATCTCGATTCATAAGTTGTTCACGTCTATGGAAAGACAAATTCAATGGATTCAATAAACCAGAATCACTAGTATTTGTATTCCAAGCTTCATCATCACGTTGTGGTACCAATGATTCAAGAACTTCAGCAAGACGAGCTCTTAAGTGTGGATTAGTTAATAATCCTGTATGACTCATAAATATTATGCTGAATTCTAACAATGGTTCCAATGGAATTGACGACACTTCAACAGACTCAAGAAATTCGTCTTTGCCACGTCTTAAATAACTAACAAGTTCCACAACATTATCA] [+] EMBL CD111469 [TGAAGAATTTTGTGATGTAGATGATGAAGAAGCAGCTATCGCTGCATCAGCTGCACTACCAGCACTACCAACAACTCCAGTACCAGGTGATAATTCTATAGAGACAAATGCTGTAAGCAATGCTCTGACAGCATTACTCAATATAGGATCATTTGTGATTTCTGGATCTCGATTCATAAGTTGTTCACGTCTATGGAAAGACAAATTCAATGGATTCAATAAACCAGAATCACTAGTATTTGTATTCCAAGCTTCATCATCACGTTGTGGTACCAATGATTCAAGAACTTCAGCAAGACGAGCTCTTAAGTGTGGATTAGT ] [+] EMBL CD180732 [ CTATAGAGACAAATGCTGTAAGCAATGCTCTGACAGCATTACTCAATATAGGATCATTTGTGATTTCTGGATCTCGATTCATAAGTTGTTCACGTCTATGGAAAGACAAATTCAATGAATTCAATAAACCAGAACCACTAGTATTTGTATTCCAAGCTTCATCATCACGTTGTGGTACCAATGATTCAAGAACTTCAGCAAGACGAGCTCTTAAGTGTGGATTAGTTAATAATCCTGTATGACTCATAAATATTATGCTGAATTCTAACAATGGTTCCAATGGAATTGACGACACTTCAACAGACTCAAGAAATTCGTCTTTGCCACGTCTTAAATAACTAACAAGTTCCACAACATTATCA] consensusID : consensus_8537#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [TGTGGCCGGCCCGGGCTGGCGGATTGATTTGTAGTAGTAGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTGCAACGGACACTCAAACTGCTGCTGTTGGTTTTTAAAAAAAATTTCATTATCGACGTCCAATGTATGCTTGTTTAAAATATTGGTACGGTAAACCATTATATGATGTACAGTTTAAGCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTCTACAATTTTTATCACTTTTGGTGAATGATGCTATCTTTTTGTTAGATGAAGCCCTT] [+] EMBL CD200908 [TGTGGCCGGCCCGGGCTGGCGGATTGATTTGTAGTAGTAGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTGCAACGGACACTCAAACTGCTGCTGTTGGTTTTTAAAAAAAATTTCATTATCGACGTCCAATGTATGCTTGTTTAAAATATTGGTACGGTAAACCATTATATGATGTACAGTTTAAGCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTCTACAATTTTTATCACTTTTGGTGAATGATGCTATCTTTTTGTTAGATGAAGCCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8537#2 ----------------------------------------------------TCGGCACG 8 consensus_8537#4 ------------------------------------------------------------ consensus_8537#3 -----------------------------------------------------TGAAGAA 7 consensus_8537#1 -------------------------AATTTGTTCAAGGTATATGAAAGTAATTAGTAATG 35 consensus_8537#0 AACAAACATCGAAATGGCTTTAGTTAGAATAATAATCTTGAATGAGAGAAGATAGCAGAC 60 consensus_8537#2 AGGGGTAGTGCAGCTGATGCAGCGATAGCTGCTTCTTCATCATCTACATCTACAAAATTC 68 consensus_8537#4 ------------------------------------------------------------ consensus_8537#3 TTTTGTGATGTAGATGATGAAGAAGCAGCTATCGCTGCATCAGCTGCACTACCAGCACTA 67 consensus_8537#1 GATTGTAATTTCCTCTATTGAAGAGCA--TTGTTTTAAAGTAAATACAAACCAGGTATTT 93 consensus_8537#0 AATTATACTTT--TCTAAAAATACCCCAATAAAATAAAATCAATAATTAATTTACCGATT 118 consensus_8537#2 TTCATCACATCAACCTGGTTCCCACTTAAACAGTAGTGATAGTCAAACA------GATAT 122 consensus_8537#4 ------------------------TGTGGCCGGCCCGGGCTGGCGGATT------GATTT 30 consensus_8537#3 C------CAACAACTCCAGTACCAGGTGATAATTCTATAGAGACAAAT-------GCTGT 114 consensus_8537#1 ATTTTTGGGTTAAAGCAAGCTTTTATAGATTAAAATATAAACTCAAATGAGGGAGAAGAC 153 consensus_8537#0 GTTTCAGCATCCGTTTCAACTGCTG-AATCAGATCCACGAGCTAATATCTGGTATATTGC 177 * consensus_8537#2 TGGTAATAAT----AGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTG-CAACG 177 consensus_8537#4 --GTAGTAGT----AGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTG-CAACG 83 consensus_8537#3 AAGCAATGCTCT--GACAGCATTACTCAATATAGGATCATTTGTGAT--TTCTG-GATCT 169 consensus_8537#1 GAAAAATGATGAAAAATATCAACACAGAAAACTATAAGAAAAGAAAAAATACTAACCTCA 213 consensus_8537#0 AGAAATTTCTAG--TACCATAATATCTGGTTTAAAACCATAAGCAGCTTTATCACGTACA 235 * * * * * * * * * consensus_8537#2 -GACACTCAAACTGCTGCTGTTGGATTTGAAGAAAAATTTCATTATCGACGTCCAATGTA 236 consensus_8537#4 -GACACTCAAACTGCTGCTGTTGGTTTTTAAAAAAAATTTCATTATCGACGTCCAATGTA 142 consensus_8537#3 CGATTCATAAGTTGTTCACGTC--TATGGAAAGACAAATTCA--ATGGA--TTCAATAAA 223 consensus_8537#1 AGAAATTCGTCTTTGCCACGTCTTAAATAACTAACAAGTTCCACAACATTATCAACCAAA 273 consensus_8537#0 TTTAGATCACGTTGTTTTGGTCCTACAAGTCTTGTCAAGAAATAATTTA--GCATACAAG 293 * ** * * consensus_8537#2 T------GCTTGTTTAAGATATTGGTACGGTAAACCA-TTATATGATGT-ACAGTTTAA- 287 consensus_8537#4 T------GCTTGTTTAAAATATTGGTACGGTAAACCA-TTATATGATGT-ACAGTTTAA- 193 consensus_8537#3 C------CAGAATCACTAGTATTTGTATTCCAAGCTT-CATCATCACGTTGTGGTACCA- 275 consensus_8537#1 TATTCTGGTAAATCAGAAAGACAACCATGAGAAAATG-GTGT-TGAGTCAGAGGTAGAA- 330 consensus_8537#0 CCACTCGATCAACCAATATTGGATGTGTAATTAATTGTGAGCATAAAGTGATCACTCGAC 353 * * * * consensus_8537#2 GCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTC-TAC 346 consensus_8537#4 GCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTC-TAC 252 consensus_8537#3 ATGATTCAAGAACTTCAGCAAGACG-AGCTCTTAAGTGTGGATTAGTTAATAATCC-TGT 333 consensus_8537#1 GTAGTAATATTACTACTATCACTACTATTTTTATTTAGTATATCATTAGCCAATTT-GAC 389 consensus_8537#0 GTAATGTAGCAATAGTGTCTAATCCAAGCATAATATGATGTCGTGCTAAACGACCTGTAT 413 * * * * consensus_8537#2 AAT--TTTTATCACTTTTG-GTGAATGATGCTATCTTTTTGTTAGATGAA---GCCCTTA 400 consensus_8537#4 AAT--TTTTATCACTTTTG-GTGAATGATGCTATCTTTTTGTTAGATGAA---GCCCTT- 305 consensus_8537#3 ATG--ACTCATAAATATTA--TGCTGAATTCTAACAATGGTTCCAATGGA---ATTGACG 386 consensus_8537#1 AAGTAAACGACAAGTGGTC-ACAGCAAATGACAATTGATCTTTTAATCGAGACATACACG 448 consensus_8537#0 GTGCAAACAATGCTTCGTCTGAAGAAGATGATAATCTAATATAACAAGAA---AATGATG 470 * * * ** * * * * consensus_8537#2 GTTTATTAGCCCAAC---TTAAACAAACTGAACGTG---AAA--GAGATAAATGTGGTGG 452 consensus_8537#4 ------------------------------------------------------------ consensus_8537#3 ACACTTCAACAGACT---CAAGAAATTCGTCTTTGC---CAC--GTCTTAAATAACTAAC 438 consensus_8537#1 ACAAACTGGTAGATTGTTCTAAATACCGTGCAGTGCGTTCAC--GCATAAAACGACGTAN 506 consensus_8537#0 ATAAAGTA-TAAATATACAAACACACTGCACTTATCATAGATTGGTCTTAATTAGAGTAT 529 consensus_8537#2 GAGATTATCATCTTCTTCAGACGAAGCATTGTTTGCACATACAGGTCGTCTAGCACGACA 512 consensus_8537#4 ------------------------------------------------------------ consensus_8537#3 AAGTTCCACAACATTATCA----------------------------------------- 457 consensus_8537#1 AAAAATTACTTGNGAATCATTAGAATTATCCGATTCGTGTGGTTGCAATTGATCTTCTAA 566 consensus_8537#0 AACTGAAAGCCAAGGACCATCGGAATGTTTCGTTCTAGTATATGACTCTTCAACAGCTCA 589 consensus_8537#2 TC- 514 consensus_8537#4 --- consensus_8537#3 --- consensus_8537#1 CCG 569 consensus_8537#0 TA- 591 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||