cluster # 8538

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Schistosoma mansoni
cluster # 8538 cluster # 8538 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8538#0 length = 555 sequences # 6

consensus_8538#1 length = 428 sequences # 1

consensusID : consensus_8538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 555
fasta sequence

                              [NTTTTTTTTTTTTTTTTTTTTTATGATTTAAGAAAATATTAGATATTGTATAACAGATCTGAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAACTGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTCGAAATTCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGTTTTACCACTTCGTCTGCGAAATCAGCTGTCGTACTCCA-AACAAAAGCTCTACTGCTGCTGCAGTTTGGACGTAAGTACATATTTTTAAGGAGATAATGGTTGGCGCAGACCTTGTACGTGCGATCCCGACGCATCAATAAGCGATAGCATCCACTGGTCCTGTTACGTAGAATTTTCAGAACTCCAACCCCACGCTCCTTCC]

[+] EMBL AI395132             [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAAATATTAGATATTGTATAACAGATCTGAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAACTGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTCGAAATTCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGATTTACCACGTCGTCAGCGAGATCAGCTGTCGTACTCCATGAC AAAGCTCTACTGCTGCTGCAATTTGGGCGTAAGTACA                                                                                                                           ]
[+] EMBL AI394897             [   TTTTTTTTTTTTTTTTTTTATGATTTAAGAAAATATTAGATATTGTATAACAGATCTGAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAACTGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTCGAAA TCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGTTTTAACACTTCGTCTGCGAAATCAGCTGTCGTACTCCA AAC AAAGCTCTACTGCTGCTGCAGTTTGGACGTACGTACATATTTTTAAGGAGATAATGGTTGGCGCATACTTT                                                                                         ]
[+] EMBL AI394766             [ntnntnTTTTTTTTTTTTTTTTATGATTTAAGAAAATATTAAATATTGTATAACAGATCTGAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAACTGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTCGAAATTCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGTTTTACCACTTCGTCTGCGAAATCAGCTGTCGTACTCCA AACAAAAGCTCTACTGCTGCTGCAGTTTGGACGTAAGTACATATTTTTAAGGAGATAATGGTTGG                                                                                                   ]
[-] EMBL AW466249             [                                              TGTATAACAGATCTGAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAACTGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTCGAAATTCTTCCGCATACGTAGAGTTAGC                                                                                                                                                                                                                                    ]
[-] EMBL CD140968             [                                                                                                                                                                                                                                                                                                                                 AGATAGCATATCTAACACCTAATAATTCTGGTTTTACCACTTCGTCTGCGAAATCAGCTGTCGTACTCCA AACAAAAGCTCTACTGCTGCTGCAGTTTGGACGTAAGTACATATTTTTAAGGAGATAATGGTTGGCGCAGACCTTGTACGTGCGATCCCGACGCATCAATAAGCGATAGCATCCACTGGTCCTGTTACGTAGAATTTTCAGAACTCCAACCCCACGCTCCTTCC]
[+] EMBL CD136471             [                                                                                                                                                                                                                                                                                                                                       CATATCTAACACCTAATAATTCTGGTTTTACCACTTCGTCTGCGAAATCAGCTGTCGTACTCCA AACAAAAGCTCTACTGCTGCTGCAGTTTGGACGTAAGTACATATTTTTAAGGAGATAATGGTTGGCGCAGACCTTGTACGTGCGATCCCGACGCATCAATAAGCG                                                           ]




>consensus_8538#0
NTTTTTTTTTTTTTTTTTTTTTATGATTTAAGAAAATATTAGATATTGTATAACAGATCT
GAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAAC
TGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAAT
TCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGC
TGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTC
GAAATTCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGTTTTACCA
CTTCGTCTGCGAAATCAGCTGTCGTACTCCAAACAAAAGCTCTACTGCTGCTGCAGTTTG
GACGTAAGTACATATTTTTAAGGAGATAATGGTTGGCGCAGACCTTGTACGTGCGATCCC
GACGCATCAATAAGCGATAGCATCCACTGGTCCTGTTACGTAGAATTTTCAGAACTCCAA
CCCCACGCTCCTTCC

consensusID : consensus_8538#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [GANATTGAANACAGATNTGATTTGTTATGAAATTGTCNCATATGAGATATTTAGCCTCGGTTTTTANCGACCTCCATAAACAGGTGAGTTGTATCCGTTGTGNTAATATCCAACATTCCTTGACAGATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGTTCCTGAAAATAAGGAATGATGGAATATTTTAGGAGGATCAGGATCCAAAAAAATTTAAAAAGTATGGTTCCTTATTCTTTGCTTAATAAAAACTAAATATAACAGTAATTTTCACCTACATTGAATAGAAAGACTCCTAATTATACGAGAGCGTAATCAATTNAGAACACNAGATGAGAATTTATAACACAATTTACATCTGATATATAGCATATAGAAGATAGTACAAATTACNC]

[-] EMBL SM9461               [GANATTGAANACAGATNTGATTTGTTATGAAATTGTCNCATATGAGATATTTAGCCTCGGTTTTTANCGACCTCCATAAACAGGTGAGTTGTATCCGTTGTGNTAATATCCAACATTCCTTGACAGATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGTTCCTGAAAATAAGGAATGATGGAATATTTTAGGAGGATCAGGATCCAAAAAAATTTAAAAAGTATGGTTCCTTATTCTTTGCTTAATAAAAACTAAATATAACAGTAATTTTCACCTACATTGAATAGAAAGACTCCTAATTATACGAGAGCGTAATCAATTNAGAACACNAGATGAGAATTTATAACACAATTTACATCTGATATATAGCATATAGAAGATAGTACAAATTACNC]




>consensus_8538#1
GANATTGAANACAGATNTGATTTGTTATGAAATTGTCNCATATGAGATATTTAGCCTCGG
TTTTTANCGACCTCCATAAACAGGTGAGTTGTATCCGTTGTGNTAATATCCAACATTCCT
TGACAGATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACT
TTCAATGCTGGTTCCTGAAAATAAGGAATGATGGAATATTTTAGGAGGATCAGGATCCAA
AAAAATTTAAAAAGTATGGTTCCTTATTCTTTGCTTAATAAAAACTAAATATAACAGTAA
TTTTCACCTACATTGAATAGAAAGACTCCTAATTATACGAGAGCGTAATCAATTNAGAAC
ACNAGATGAGAATTTATAACACAATTTACATCTGATATATAGCATATAGAAGATAGTACA
AATTACNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8538#0      NTTTTTTTTTTTTTTTTTTTTTATGATTTAAGAAAATATTAGATATTGTATAACAGATCT 60
consensus_8538#1      -----------------------------------------GANATTGAANA-CAGATNT 18
                                                               ** **** * * ***** *

consensus_8538#0      GAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAAC 120
consensus_8538#1      GA-TTTGTT-ATGAAA-TTGTCNCAT--ATGAGATATTTAGCC-TCGGTTTTTANCGACC 72
                      ** ****** ****** ***** **   ************* * ********** *** *

consensus_8538#0      TGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAAT 180
consensus_8538#1      TCCA-TAAACAGGTGAGTTG-TATCCGTTGTGNTAATATCCAA-CATTCCTTGACAGA-T 128
                      * ** *************** ****** **** ****** *** ************** *

consensus_8538#0      TCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGC 240
consensus_8538#1      TCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGC 188
                      ************************************************************

consensus_8538#0      TGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTC 300
consensus_8538#1      TGGTTCCTGAAAATAAGGAATGATGGAATATTTTAGGAGGATCAGGATCCAAAAAAATTT 248
                      *** **            * *  * *    **    **  * *    ** ****   ** 

consensus_8538#0      GAAATTCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGTTTTACCA 360
consensus_8538#1      AAAAAG--TATGGTTCCTTATTCTTTGCTTAATAAAAACTAAATATAACAGTAATTTTCA 306
                       ***    *  *  * * **   ** ** **   ** **  ****   * *   **  **

consensus_8538#0      CTTCGTCTGCGAAATCAGCTGTCGTACTCCAAACAAAAGCTCTACTGCTGCTGCAGTTTG 420
consensus_8538#1      CCTACATTGAATAGAAAGACTCCTAATT--ATACGAGAGCGTAATCAATTNAGAACACNA 364
                      * *    **   *   **    *  * *  * ** * ***   *    *   * *     

consensus_8538#0      GACGTAAGTACATATTTTTAAGGAGATAATGGTTGGCGCAGACCTTGTACGTGCGATCCC 480
consensus_8538#1      GATGAGAATTTATA-----ACACAATTTACATCTGATATATAGCATATAGAAGATAGTAC 419
                      ** *  * *  ***     *   *  * *    **    * * * * **   *  *   *

consensus_8538#0      GACGCATCAATAAGCGATAGCATCCACTGGTCCTGTTACGTAGAATTTTCAGAACTCCAA 540
consensus_8538#1      AAATTACNC--------------------------------------------------- 428
                       *   *                                                      

consensus_8538#0      CCCCACGCTCCTTCC 555
consensus_8538#1      ---------------