cluster # 854

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Schistosoma mansoni
cluster # 854 cluster # 854 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_854#0 length = 217 sequences # 1

consensus_854#1 length = 202 sequences # 1

consensusID : consensus_854#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [ATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGCGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGGAATTGGAGTGTACTGACTAGAACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAAGAGTTGGTTGGT]

[+] EMBL BE519436             [ATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGCGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGGAATTGGAGTGTACTGACTAGAACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAAGAGTTGGTTGGT]




>consensus_854#0
ATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGCGG
TGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTG
AGCGAGCGAGTGTATTTTTGGAATTGGAGTGTACTGACTAGAACGGGAGTATAGTTTTTG
TGGCGGCGGCGGTGGCGGCGACAAAGAGTTGGTTGGT

consensusID : consensus_854#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [ATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGCGGTGTTGGTTGCGATGAAAGMMTKAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGCGGTGGCGGCGACAAGAGTGGTTGGT]

[+] EMBL BE519447             [ATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGCGGTGTTGGTTGCGATGAAAGMMTKAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGCGGTGGCGGCGACAAGAGTGGTTGGT]




>consensus_854#1
ATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGCGG
TGTTGGTTGCGATGAAAGMMTKAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAG
TGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGCGGT
GGCGGCGACAAGAGTGGTTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_854#0      ATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGCGG 60
consensus_854#1      ATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGCGG 60
                     ************************************************************

consensus_854#0      TGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTG 120
consensus_854#1      TGTTGGTT--GCGATGAAAGMM--------TKAAGAGGTGTAGTTGTATCGAGAGATGTG 110
                     ********  ****** *            * ****************************

consensus_854#0      AGCGAGCGAGTGTATTTTTGGAATTGGAGTGTACTGACTAGAACGGGAGTATAGTTTTTG 180
consensus_854#1      AGCGAGCGAGTGTATTTTTG-AATTGGAGTGTACTGACTAGA-CGGGAGTATAGTTTTTG 168
                     ******************** ********************* *****************

consensus_854#0      TGGCGGCGGCGGTGGCGGCGACAAAGAGTTGGTTGGT 217
consensus_854#1      TGGCGGCG-CGGTGGCGGCGACAAGAG--TGGTTGGT 202
                     ******** ***************     ********