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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 750 fasta sequence
[CAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCACGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACCATCAAATNNTTCCCTGCTGGACCGAAAACAGATGACCCTATTGATTACGATGGTGCTCGAAAGTCAGA]
[+] EMBL AI976249 [CAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCACGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGCTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTACAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGT ]
[+] EMBL CD112670 [ TGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCGAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCA ]
[+] EMBL CD162571 [ ATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGNGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACCATCAAATNNTTCCCTGCTGGACCGAAAACAGATGACCCTATTGATTACGATGGTGCTCGAAAGTCAGA]
[-] EMBL CD130128 [ ATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTC ]
consensusID : consensus_8540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 716 fasta sequence
[CCTGGCACGTTCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCGTTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACTATCAAATTTTTCCCTGCTGGACCGAAACAGATGACCCTATTGATTACGATGGTTGCTCCGAGTTCAGTTGCAATCGTTGCATGGGCCATGGGAAAAGCCGATGTTCTGCTCCAGCA]
[+] EMBL CD115564 [CCTGGCACGTTCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCGTTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACTATCAAATTTTTC ]
[+] EMBL AI381057 [ ACTGTT AAGTAGCCGC TTAGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACCATCAAATTTTTCCCTGCTGGACCGAAACAGATGACCCTATTGATTACGATGGTTGCTCCGAGTTCAGTTGCAATCGTTGCATGGGCCATGGGAAAAGCCGATGTTCTGCTCCAGCA]
consensusID : consensus_8540#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[TATTTGGAGATAATAAAAACGGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTNATTATGTTCTATG]
[+] EMBL CD195911 [TATTTGGAGATAATAAAAACGGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTNATTATGTTCTATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8540#0 CAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGC 60
consensus_8540#1 ------------------------------------------------------------
consensus_8540#2 ------------------------------------------------------------
consensus_8540#0 ACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAA 120
consensus_8540#1 ----------------------CCTGGCACGTTCAAACTCACAGACCAAAACTTTGACAA 38
consensus_8540#2 ------------------------------------------------------------
consensus_8540#0 AGTAATATCAAGCACGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAG 180
consensus_8540#1 AGTAATATCAAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAG 98
consensus_8540#2 ------------------------------------------------------------
consensus_8540#0 TAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGT 240
consensus_8540#1 TAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGT 158
consensus_8540#2 ------------------------------------------------------------
consensus_8540#0 TGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTT 300
consensus_8540#1 TGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTT 218
consensus_8540#2 ------------------------------------------------------------
consensus_8540#0 TCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAG 360
consensus_8540#1 TCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAG 278
consensus_8540#2 --------------TATTTGGAGATAATAAAAACGGTCCTAAACCATATACAGGTGGTAG 46
******************** *************************
consensus_8540#0 AGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAG 420
consensus_8540#1 AGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAG 338
consensus_8540#2 AGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAG 106
************************************************************
consensus_8540#0 AACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAG 480
consensus_8540#1 AACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAG 398
consensus_8540#2 AACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAG 166
************************************************************
consensus_8540#0 ---CAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGC 537
consensus_8540#1 ---CAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGC 455
consensus_8540#2 TTCCAAATTTGG-GAGAATGTA-TCGTTGGACA-GTTCTTTTCCTGCTGTTAAGTC-CGG 222
*** ** * ***** ** ** * ** * * * ** * * * **
consensus_8540#0 CCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTT 597
consensus_8540#1 CCCTTGGTGTGGTCGTTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTT 515
consensus_8540#2 CACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTT---TG 279
* *** ** * ** * ** * * *** *** * ** * * *
consensus_8540#0 GAAAGGAACTGTTAAAGTAGCCGCTTTGGATG-CTACGGTTCATAGTCGAATGGCTCAGA 656
consensus_8540#1 GAAAGGAACTGTTAAAGTAGCCGCTTTGGATG-CTACGGTTCATAGTCGAATGGCTCAGA 574
consensus_8540#2 ACAAAGTAATATCAAGCAAGGAACTATGGTTNATTATGTTCTATG--------------- 324
** * * * * ** ** ** *** * ** * * **
consensus_8540#0 AATATGGGATTCGAGGTTATCCTACCATCAAATNNTTCCCTGCTGGACCGAAAACAGATG 716
consensus_8540#1 AATATGGGATTCGAGGTTATCCTACTATCAAATTTTTCCCTGCTGGACCGAAA-CAGATG 633
consensus_8540#2 ------------------------------------------------------------
consensus_8540#0 ACCCTATTGATTACGATGGT-GCTCGAAAGTCAGA------------------------- 750
consensus_8540#1 ACCCTATTGATTACGATGGTTGCTCCGAGTTCAGTTGCAATCGTTGCATGGGCCATGGGA 693
consensus_8540#2 ------------------------------------------------------------
consensus_8540#0 -----------------------
consensus_8540#1 AAAGCCGATGTTCTGCTCCAGCA 716
consensus_8540#2 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||