cluster # 8542

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Schistosoma mansoni
cluster # 8542 cluster # 8542 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8542#0 length = 1074 sequences # 6

consensus_8542#1 length = 255 sequences # 1

consensusID : consensus_8542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1074
fasta sequence

                              [TTCGGTCACGAAGCGGCGCACATATCAAAACCTAGGGAATTACCGTTTTGAAATATGGTTGAAGCACTGTTCAGCGTATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGAATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATTGGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTGACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTAAATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAATCGTT-TTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTATGAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTTGGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTTATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTAGGTTGTTTACCATCACCCTGTAATTCATTATATGGTTCAACGAAAGCTTTTATTCATCATTTTTCAAAATCAATTGCGGCGGAACTCAATCCTCCCGGTAATAAAGTGATTATTCAAACAGTTTGTCCACTTTTTGTTGCAACAGCAATGTCACGTGCAAGCAAGACATCATTCTTTATACCATCACCTCGTGATTATGCTAAAAGTGCATTAAATATGTTAGGTGTGGAAGAATTCACAACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCACTACCTTTATCATGGGTTTATGATAAGTATAAGAAAATTGCTGCAAAAGCACGTAGAAAATATCAATAAACTTTTTATCTGTTTACAATCTCTATTGTTGTTTCAACTTTCTTTTCAATACATATGTAT]

[+] EMBL CD082146             [TTCGGTCACGAAGCGGCGCACATATCAAAACCTAGGGAATTACCGTTTTGAAATATGGTTGAAGCACTGTTCAGCGTATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGAATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATTGGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTGACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTAAATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAATCGTT TTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTATGAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTTGGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTTATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAANACANAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTNTTAGGTTGTTTAC                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD078951             [              GGCGCACATATCAAAACCTAGGGAATTACCGATTTGAAATATGGTTGAAGCACTGTTCAGCGTATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGAATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATTGGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTGACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTAAATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAATCGTT TTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTATGAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTTGGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTNTATTCAAGATTTAATCGCTTGNCATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD078988             [                                                                             ATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGAATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATTGGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTGACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTAAATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAATCGTT TTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTATGAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTTGGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTTATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTAGGTTGTTTA                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD083321             [                                                                                                                                                                                                                                                                                                                                                                     GAATCGTTCTTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTATGAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTTGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD073439             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTTGCCTTGTGAATAATGTTGGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTTATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTAGGTTGTTTACCATCACCCTGTAATTCATTATATGGTTCAACGAAAGCTTTTATTCATCATTTTTCAAAATCAATTGCGGCGGAACTCAATCCTCCCGGTAATAAAGTGATTATTCAAACAGTTTGTCCACTTTTTGTTGCAACAGCAATGTCACGTGCAAGCAAGACATCATTCTTTATACCATCACCTCGTGATTATGCTAAAAGTGCATTAAATATGTTAGGTGTGGAAGAATTCACAACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCACTACCTTTATCATGGGTTTATGATAAGTATAAGAAAATTGCTGCAAAAGCACGTAGAAAATATCAATAAACTTTTTATCTGTTTACAATCTCTATTGTTGTTTCAACTTTCTTTTCAATACATATGTAT]
[-] EMBL CD073405             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTTATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTAGGTTGTTTACCATCACCCTGTAATTCATTATATGGTTCAACGAAAGCTTTTATTCATCATTTTTCAAAATCAATTGCGGCGGAACTCAATCCTCCCGGTAATAAAGTGATTATTCAAACAGTTTGTCCACTTTTTGTTGCAACAGCAATGTCACGTGCAAGCAAGACATCATTCTTTATACCATCACCTCGTGATTATGCTAAAAGTGCATTAAATATGTTAGGTGTGGAAGAATTCACAACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCACTACCTTTATCATGGGTTTATGATAAGTATAAGAAAATTGCTGCAAAAGCACGTAGAAAATATCAATAAACTTTTTATCTGTTTACAATCTCTATTGTTGTTTCAACTTTCTTTTCAATACATATGTAT]




>consensus_8542#0
TTCGGTCACGAAGCGGCGCACATATCAAAACCTAGGGAATTACCGTTTTGAAATATGGTT
GAAGCACTGTTCAGCGTATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGA
ATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATT
GGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTG
ACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTA
AATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAA
TCGTTTTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTAT
GAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTT
GGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTT
ATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTA
CCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTA
GGTTGTTTACCATCACCCTGTAATTCATTATATGGTTCAACGAAAGCTTTTATTCATCAT
TTTTCAAAATCAATTGCGGCGGAACTCAATCCTCCCGGTAATAAAGTGATTATTCAAACA
GTTTGTCCACTTTTTGTTGCAACAGCAATGTCACGTGCAAGCAAGACATCATTCTTTATA
CCATCACCTCGTGATTATGCTAAAAGTGCATTAAATATGTTAGGTGTGGAAGAATTCACA
ACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCACTACCTTTATCATGG
GTTTATGATAAGTATAAGAAAATTGCTGCAAAAGCACGTAGAAAATATCAATAAACTTTT
TATCTGTTTACAATCTCTATTGTTGTTTCAACTTTCTTTTCAATACATATGTAT

consensusID : consensus_8542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [TATGNTAAAAGTGNACTAAATATGTTAGGTGTGGAAGAAATTCACAACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCATTACCTTTATCATGGGTTTATGATAAGTATAAGACAATTGCTGNAAAAGCACGTAGGAAAATATCAATACNCTNTTCATCTGNGTTACAATCTCTATTGTTGTGTTCAACTNTCTTNCCGATACATATGTATNTCTTTTCGGATATCGAATTCTNAGATATTAT]

[+] EMBL SM7121               [TATGNTAAAAGTGNACTAAATATGTTAGGTGTGGAAGAAATTCACAACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCATTACCTTTATCATGGGTTTATGATAAGTATAAGACAATTGCTGNAAAAGCACGTAGGAAAATATCAATACNCTNTTCATCTGNGTTACAATCTCTATTGTTGTGTTCAACTNTCTTNCCGATACATATGTATNTCTTTTCGGATATCGAATTCTNAGATATTAT]




>consensus_8542#1
TATGNTAAAAGTGNACTAAATATGTTAGGTGTGGAAGAAATTCACAACAGGTTGTTTTGC
TCATGCACTACAAAGTTACGTATTAACTTCATTACCTTTATCATGGGTTTATGATAAGTA
TAAGACAATTGCTGNAAAAGCACGTAGGAAAATATCAATACNCTNTTCATCTGNGTTACA
ATCTCTATTGTTGTGTTCAACTNTCTTNCCGATACATATGTATNTCTTTTCGGATATCGA
ATTCTNAGATATTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8542#0      TTCGGTCACGAAGCGGCGCACATATCAAAACCTAGGGAATTACCGTTTTGAAATATGGTT 60
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      GAAGCACTGTTCAGCGTATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGA 120
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      ATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATT 180
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      GGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTG 240
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      ACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTA 300
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      AATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAA 360
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      TCGTTTTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTAT 420
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      GAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTT 480
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      GGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTT 540
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      ATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTA 600
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      CCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTA 660
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      GGTTGTTTACCATCACCCTGTAATTCATTATATGGTTCAACGAAAGCTTTTATTCATCAT 720
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      TTTTCAAAATCAATTGCGGCGGAACTCAATCCTCCCGGTAATAAAGTGATTATTCAAACA 780
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      GTTTGTCCACTTTTTGTTGCAACAGCAATGTCACGTGCAAGCAAGACATCATTCTTTATA 840
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      CCATCACCTCGTGATTATGCTAAAAGTGCATTAAATATGTTAGGTGTGGAAGAA-TTCAC 899
consensus_8542#1      ---------------TATGNTAAAAGTGNACTAAATATGTTAGGTGTGGAAGAAATTCAC 45
                                     **** ******** * *********************** *****

consensus_8542#0      AACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCACTACCTTTATCATG 959
consensus_8542#1      AACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCATTACCTTTATCATG 105
                      ********************************************** *************

consensus_8542#0      GGTTTATGATAAGTATAAGAAAATTGCTGCAAAAGCACGTAG-AAAATATCAATAAACTT 1018
consensus_8542#1      GGTTTATGATAAGTATAAGACAATTGCTGNAAAAGCACGTAGGAAAATATCAATACNCTN 165
                      ******************** ******** ************ ************  ** 

consensus_8542#0      TTTATCTGT-TTACAATCTCTATTGTTGT-TTCAACTTTCTTTTCAATACATATGTAT-- 1074
consensus_8542#1      TTCATCTGNGTTACAATCTCTATTGTTGTGTTCAACTNTCTTNCCGATACATATGTATNT 225
                      ** *****  ******************* ******* ****  * ************  

consensus_8542#0      ------------------------------
consensus_8542#1      CTTTTCGGATATCGAATTCTNAGATATTAT 255