cluster # 8546

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Schistosoma mansoni
cluster # 8546 cluster # 8546 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8546#0 length = 1181 sequences # 5

consensus_8546#1 length = 425 sequences # 2

consensusID : consensus_8546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1181
fasta sequence

                              [CCNAGCCAANAATTTGGCACGAGGGTCATTCCTAATGTTAAGTGCCGCACTTCCTCTGCAAACCAATCTGCTAGGATTAACCACACTCACTTTACCTAGTCCACTTAAAACAGAAGCTATCTTGTTACCCACATATGCAGAATGTTCAAGTCTTGTCTGCGAATCTTCACAATACCGATTTATTTGTGATGAAAATACATCCAACTGTCCGAGTACAAAAACGAGCAAGAAATCTAGCAGTTGGTGGACAAAGCTGATCAGTGGCAAATACTTCGATTCATTCAACTGGCTTACCTTTATCCGTACAATTAATCCATTTAGTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACCTCGCCCGATCCAAGCTAAGAAACAGTCGGTCTTCCGTCAGTTTATTTCTCGTGCTTTTGGCTATTCATCTGTATCGCCTAGCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTGCTTCCTGGTCTCTTCAATGTGGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAATCAGTTTAGATGTGGTAACGACGATTCGGTGTTTACATCAGCTGGACATCACATCTAAACCTAGATCACACTTAGAACATACGGAATGGCTAAATGAACTACCTTGTACCAACGGTTCAGAAGAACTTGATCGACGTATTTACTAGCCATAGTCAGTTCTATCCTGCTGACAATTCGATTATTATGTGTGTTTACACAACTAGTGGAAATGTTTGTAGTATATTCGTAGATTTGTTTTACTGCATTTTCCTTTTTTTCGCTTATTAAAGAACTAGTCGATATATATATATATATATATACCCTTCCAAGTCGATTAAATTTTATTACTTGTTACTTCAAGTGATCTCTTCGCTCGAGTATATTCTACTTTATGTCTATTTTTCGTTCAATACTTTGACAGTAATCGGTTGCAATTTCATTCCTCTTTTGAATAACCATTCGATTTTCTTTATTATTTTTCGGTTTTTGGTTTTTCTCAATTTCGGTAATCTATTGTACAAACGATCGTTAACTCAATTCTATGTTTAAAATTTTATTTTGTACATAAGTAAATTGTAAATGAAATAATCTTCCATTTGCAATTGCTATAATTATTATTGCCTGTAAAGTGGGTTACTCTGATAAATGAATGATATATATATA]

[+] EMBL CD079765             [CCNAGCCAANAATTTGGCACGAGGGTCATTCCTAATGTTAAGTGCCGCACTTCCTCTGCAAACCAATCTGCTAGGATTAACCACACTCACTTTACCTAGTCCACTTAAAACAGAAGCTATCTTGTTACCCACATATGCAGAATGTTCAAGTCTTGTCTGCGAATCTTCACAATACCGATTTATTTGTGATGAAAATACATCCAACTGTCCGAGTACAAAAACGAGCAAGAAATCTAGCAGTTGGTGGACAAAGCTGATCAGTGGCAAATACTTCGATTCATTCAACTGGCTTACCTTTATCCGTACAATTAATCCATTTAGTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACCTCGCCCGATCCAAGCTAAGAAACAGTCGGTCTTCCGTCAGTTTATTTCTCGTGCTTTTGGCTATTCATCTGTATCGCCTAGCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTGCTTCCTGGTCTCTTCAATGTGGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAATCAGTTTAGATGTGGTAACGACGATTCGGTGTTTACATCAGCTGGACATCACATCTAAACCTAGATCACACTTAGAACATACGGAATGGCTAAATGAACTACCTTGTACCAACGGTTCAGAAGAACTTGATCGACGTATTTACTAGCCATAGTCAGTTCTATCCTGCTGACAATTCGATTATTATGTGTGTTTACACAACTAGTGGAAATGTTTGTAGTATA                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD181810             [                                                                                                                                                                   TCTTCACAATACCGATTTATTTGTGATGAAAATACATCCAACTGTCCGAGTACAAAAACGAGCAAGAAATCTAGCAGTTGGTGGACAAAGCTGATCAGTGGCAAATACTTCGATTCATTCAACTGGCTTACCTTTATCCGTACAATTAATCCATTTAGTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACCTCGCCCGATCCAAGCTAAGAAACAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD198782             [                                                                                                                                                                                                                                                                                                             CGTACAATTAATCCATTTAGTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACCTCGCCCGATCCAAGCTAAGAAACAGTCGGTCTTCCGTCAGTTTATTTCTCGTGCTTTTGGCTATTCATCTGTATCGCCTAGCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTGCTTCCTGGTCTCTTCAATGTGGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAATCAGTTTAGATGTGGTAACGACGATTCGGTGTTTACATCAGTTGGACATCACATCTAAACCTAGATCACACTTAGAACATACGGAATGGCTAAATGAACTACCTTGTACCAACGGTTCAGAAGAACTTGATCGACGTATTTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD198703             [                                                                                                                                                                                                                                                                                                                                                                               ATCCAAGCTAAGAAACAGTCGGTCTTCCGTCAGTGTATTTCTCGTGCTTTTGGCTATTCATCTGTATCGCCTAGCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTGCTTCCTGGTCTCTTCAATGTGGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAATCAGTTTAGATGTGGTAACGACGATTCGGTGTTTACATCAGCTGGACATCACATCTAAACCTAGATCACACTTAGAACATACGGAATGGCTAAATGAACTACCTTGTACCAACGGTTCAGAAGAACTTGATCGACGTATTTACTAGCCATgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD074025             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      nTCAATCAGTTTAGATGTGGTAACGACGATTCGGTGTTTACATCAGCTGGACATCACATCTAAACCTAGATCACACTTAGAACATACGGAATGGCTAAATGAACTACCTTGTACCAACGGTTCAGAAGAACTTGATCGACGTATTTACTAGCCATAGTCAGTTCTATCCTGCTGACAATTCGATTATTATGTGTGTTTACACAACTAGTGGAAATGTTTGTAGTATATTCGTAGATTTGTTTTACTGCATTTTCCTTTTTTTCGCTTATTAAAGAACTAGTCGATATATATATATATATATATACCCTTCCAAGTCGATTAAATTTTATTACTTGTTACTTCAAGTGATCTCTTCGCTCGAGTATATTCTACTTTATGTCTATTTTTCGTTCAATACTTTGACAGTAATCGGTTGCAATTTCATTCCTCTTTTGAATAACCATTCGATTTTCTTTATTATTTTTCGGTTTTTGGTTTTTCTCAATTTCGGTAATCTATTGTACAAACGATCGTTAACTCAATTCTATGTTTAAAATTTTATTTTGTACATAAGTAAATTGTAAATGAAATAATCTTCCATTTGCAATTGCTATAATTATTATTGCCTGTAAAGTGGGTTACTCTGATAAATGAATGATATATATATA]




>consensus_8546#0
CCNAGCCAANAATTTGGCACGAGGGTCATTCCTAATGTTAAGTGCCGCACTTCCTCTGCA
AACCAATCTGCTAGGATTAACCACACTCACTTTACCTAGTCCACTTAAAACAGAAGCTAT
CTTGTTACCCACATATGCAGAATGTTCAAGTCTTGTCTGCGAATCTTCACAATACCGATT
TATTTGTGATGAAAATACATCCAACTGTCCGAGTACAAAAACGAGCAAGAAATCTAGCAG
TTGGTGGACAAAGCTGATCAGTGGCAAATACTTCGATTCATTCAACTGGCTTACCTTTAT
CCGTACAATTAATCCATTTAGTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACC
TCGCCCGATCCAAGCTAAGAAACAGTCGGTCTTCCGTCAGTTTATTTCTCGTGCTTTTGG
CTATTCATCTGTATCGCCTAGCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTG
CTTCCTGGTCTCTTCAATGTGGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAAT
CAGTTTAGATGTGGTAACGACGATTCGGTGTTTACATCAGCTGGACATCACATCTAAACC
TAGATCACACTTAGAACATACGGAATGGCTAAATGAACTACCTTGTACCAACGGTTCAGA
AGAACTTGATCGACGTATTTACTAGCCATAGTCAGTTCTATCCTGCTGACAATTCGATTA
TTATGTGTGTTTACACAACTAGTGGAAATGTTTGTAGTATATTCGTAGATTTGTTTTACT
GCATTTTCCTTTTTTTCGCTTATTAAAGAACTAGTCGATATATATATATATATATATACC
CTTCCAAGTCGATTAAATTTTATTACTTGTTACTTCAAGTGATCTCTTCGCTCGAGTATA
TTCTACTTTATGTCTATTTTTCGTTCAATACTTTGACAGTAATCGGTTGCAATTTCATTC
CTCTTTTGAATAACCATTCGATTTTCTTTATTATTTTTCGGTTTTTGGTTTTTCTCAATT
TCGGTAATCTATTGTACAAACGATCGTTAACTCAATTCTATGTTTAAAATTTTATTTTGT
ACATAAGTAAATTGTAAATGAAATAATCTTCCATTTGCAATTGCTATAATTATTATTGCC
TGTAAAGTGGGTTACTCTGATAAATGAATGATATATATATA

consensusID : consensus_8546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 425
fasta sequence

                              [AATCGGCACGAGGTGTCTGCGAATCTTCACAATACCGATTTATTTGTGATGAAAATACATCCAACTGTCCGAGTACAAAAACGAGCAAGAAATCTAGCAGTTGGTGGACAAAGCTGATCAGTGGCACATACTTCGATTCATTCAACTGGCTTACCTTTATCCGTACAATTAATCCATTTAGTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACCTCGCCCGATCCAAGCTAAGAAACAGTCGGTCTTCCGTCAGTTTATTTCTCGTGCTTTTGGCTATTCATCTGTATCGCCTAGCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTGCTTCCTGGTCTCTTCAATGTGGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAATCAGTTTAGATGTGGTAACGACGATT]

[+] EMBL CD083778             [AATCGGCACGAGGTGTCTGCGAATCTTCACAATACCGATTTATTTGTGATGAAAATACATCCAACTGTCCGAGTACAAAAACGAGCAAGAAATCTAGCAGTTGGTGGACAAAGCTGATCAGTGGCACATACTTCGATTCATTCAACTGGCTTACCTTTATCCGTACAATTAATCCATTTAGTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACCTCGCCCGATCCAAGCTAAGAAACAGTCGGTCTTCCGTCAGTTTATTTCTCGTGCTTTTGGCTATTCATCTGTATCGCCTAGCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTGCTTCCTGGTCTCTTCAATGTGGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAATCAGTTTAGATGTGGTAACGACGATT]
[+] EMBL CD181687             [                                                                                                                              CATACTTCGATTCATTCAACTGGCTTACCTTTATCCGTACAATTAATCCATTTAGTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACCTCGCCCGATCCAAGCTAAGAAACAGTCGGTCTTCCGTCAGTTTATTTCTCGTGCTTTTGGCTATTCATCTGTATCGCCTAGCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTGCTTCCTGGTCTCTTCAATGTGGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAATCAGTTTAGATGTGGTAACGACGATT]




>consensus_8546#1
AATCGGCACGAGGTGTCTGCGAATCTTCACAATACCGATTTATTTGTGATGAAAATACAT
CCAACTGTCCGAGTACAAAAACGAGCAAGAAATCTAGCAGTTGGTGGACAAAGCTGATCA
GTGGCACATACTTCGATTCATTCAACTGGCTTACCTTTATCCGTACAATTAATCCATTTA
GTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACCTCGCCCGATCCAAGCTAAGA
AACAGTCGGTCTTCCGTCAGTTTATTTCTCGTGCTTTTGGCTATTCATCTGTATCGCCTA
GCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTGCTTCCTGGTCTCTTCAATGT
GGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAATCAGTTTAGATGTGGTAACGA
CGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8546#0      CCNAGCCAANAATTTGGCACGAGGGTCATTCCTAATGTTAAGTGCCGCACTTCCTCTGCA 60
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      AACCAATCTGCTAGGATTAACCACACTCACTTTACCTAGTCCACTTAAAACAGAAGCTAT 120
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      CTTGTTACCCACATATGCAGAATGTTCAAGTCTTGTCTGCGAATCTTCACAATACCGATT 180
consensus_8546#1      --------------------AATCGGCACGAGGTGTCTGCGAATCTTCACAATACCGATT 40
                                          ***   ** *   ***************************

consensus_8546#0      TATTTGTGATGAAAATACATCCAACTGTCCGAGTACAAAAACGAGCAAGAAATCTAGCAG 240
consensus_8546#1      TATTTGTGATGAAAATACATCCAACTGTCCGAGTACAAAAACGAGCAAGAAATCTAGCAG 100
                      ************************************************************

consensus_8546#0      TTGGTGGACAAAGCTGATCAGTGGCAAATACTTCGATTCATTCAACTGGCTTACCTTTAT 300
consensus_8546#1      TTGGTGGACAAAGCTGATCAGTGGCACATACTTCGATTCATTCAACTGGCTTACCTTTAT 160
                      ************************** *********************************

consensus_8546#0      CCGTACAATTAATCCATTTAGTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACC 360
consensus_8546#1      CCGTACAATTAATCCATTTAGTTCTCCATCTCCGAATAATCTAGATGAATCAACGGTACC 220
                      ************************************************************

consensus_8546#0      TCGCCCGATCCAAGCTAAGAAACAGTCGGTCTTCCGTCAGTTTATTTCTCGTGCTTTTGG 420
consensus_8546#1      TCGCCCGATCCAAGCTAAGAAACAGTCGGTCTTCCGTCAGTTTATTTCTCGTGCTTTTGG 280
                      ************************************************************

consensus_8546#0      CTATTCATCTGTATCGCCTAGCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTG 480
consensus_8546#1      CTATTCATCTGTATCGCCTAGCTATGGGCTAGGTTTAGTCATACTAACGTATAATATTTG 340
                      ************************************************************

consensus_8546#0      CTTCCTGGTCTCTTCAATGTGGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAAT 540
consensus_8546#1      CTTCCTGGTCTCTTCAATGTGGATTGCTGGCCGACGACTAAGAGATGCTACGTTGTCAAT 400
                      ************************************************************

consensus_8546#0      CAGTTTAGATGTGGTAACGACGATTCGGTGTTTACATCAGCTGGACATCACATCTAAACC 600
consensus_8546#1      CAGTTTAGATGTGGTAACGACGATT----------------------------------- 425
                      *************************                                   

consensus_8546#0      TAGATCACACTTAGAACATACGGAATGGCTAAATGAACTACCTTGTACCAACGGTTCAGA 660
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      AGAACTTGATCGACGTATTTACTAGCCATAGTCAGTTCTATCCTGCTGACAATTCGATTA 720
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      TTATGTGTGTTTACACAACTAGTGGAAATGTTTGTAGTATATTCGTAGATTTGTTTTACT 780
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      GCATTTTCCTTTTTTTCGCTTATTAAAGAACTAGTCGATATATATATATATATATATACC 840
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      CTTCCAAGTCGATTAAATTTTATTACTTGTTACTTCAAGTGATCTCTTCGCTCGAGTATA 900
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      TTCTACTTTATGTCTATTTTTCGTTCAATACTTTGACAGTAATCGGTTGCAATTTCATTC 960
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      CTCTTTTGAATAACCATTCGATTTTCTTTATTATTTTTCGGTTTTTGGTTTTTCTCAATT 1020
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      TCGGTAATCTATTGTACAAACGATCGTTAACTCAATTCTATGTTTAAAATTTTATTTTGT 1080
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      ACATAAGTAAATTGTAAATGAAATAATCTTCCATTTGCAATTGCTATAATTATTATTGCC 1140
consensus_8546#1      ------------------------------------------------------------
                                                                                  

consensus_8546#0      TGTAAAGTGGGTTACTCTGATAAATGAATGATATATATATA 1181
consensus_8546#1      -----------------------------------------