cluster # 8548

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Schistosoma mansoni
cluster # 8548 cluster # 8548 Sequences # 7 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8548#0 length = 860 sequences # 2
consensus_8548#1 length = 798 sequences # 1
consensus_8548#2 length = 587 sequences # 1

consensus_8548#3 length = 509 sequences # 1
consensus_8548#4 length = 338 sequences # 1
consensus_8548#5 length = 310 sequences # 1

consensusID : consensus_8548#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 860
fasta sequence

                              [AAACTGGAATCATTAAGTTTGCAAAGAGATATTAATTGAGTATTGGAGTTATTGCAAATACTTCAGAGATGTCCCGAAATACAACCATCAAAGTTAGCAGCTCTACAGCGTATACTGCAGTCAGACTTTTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCACAAGGTACTGTGAAACTTGTCGTAAGGTATACACCACGTATTCTTGAAGAGATGGAAGCACGCTTTGACAAACAGAAAGCTCGACGTCGACAACTTAATTAACAGAAATTTAGAGACGTGTGTGCATAATGCTGTGCTGTTATAATTCACTAAATTATTTAGACTAACATACTTNCATTATACAGCACAGATTAAGTTTTCGAACTCTTTTTTNCCC-ACTCTNTACATNCTCATTAGAATCTGTAAATAAAATTTGTGG--TATATTAG-NTNTGAACATTNCGNCGATTTTGAATTCTTTA-TGGATTNNGC-TTA-CATGCTGNAGTC-TATAGAC-AAATA-TTAAATTTTATGC-ACCATA--TTTGATGACTTAG-ATATAATTTTTG]

[+] EMBL CD082115             [AAACTGGAATCATTAAGTTTGCAAAGAGATATTAATTGAGTATTGGAGTTATTGCAAATACTTCAGAGATGTCCCGAAATACAACCATCAAAGTTAGCAGCTCTACAGCGTATACTGCAGTCAGACTTTTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCACAAGGTACTGTGAAACTTGTCGTAAGGTATACACCACGTATTCTTGAAGAGATGGAAGCACGCTTTGACAAACAGAAAGCTCGACGTCGACAACTTAATTAACAGAAATTTAGAGACGTGTGTGCATAATGCTGTGCTGTTATAATTCACTAAATTATTTAGACTAACATACTTNCATTATACAGCACAGATTAAGTTTTCGAACTCTTTTTTNCCC ACTCTNTACATNCTCATTAGAATCTGTAAATAAAATTTGTGG  TATATTAG NTNTGAACATTNCGNCGATTTTGAATTCTTTA TGGATTNNGC TTA CATGCTGNAGTC TATAGAC AAATA TTAAATTTTATGC ACCATA  TTTGATGACTTAG ATATAATTT   ]
[-] EMBL CD075730             [                                                                                                                                                                                                                                                                               TAGAACTACCAANAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCACAAGGTACTGTGAAACTTGTCGTAAGGTATACACCACGTATTCTTGAAGAGATGGAAGCACGCTTTGACAAACAGAAAGCTCGACGTCGACAACTTAATTAACAGAAATTTAGAGACGTGTGTGCATAATGCTGTGCTGTTATAATTCACTAAATTATTTAGACTAACATACTTCCATTATACAGCACAGATTAAGTTTTCGAACTCTTTTTTCCCCAACTCTTTACATCCTCATTAGAATCTGTAAAT  AATTTGTTGTTTATATTAGTTTTTGAACATTTCGTCGATTTTGAATTCTTTATTGTAATTTGCTTTATCATGCTGTAGTCATATAGACAAAATATTTAATTTTTATGCAACAATAATTTTGATGACTTAGAATATAATTTTTG]




>consensus_8548#0
AAACTGGAATCATTAAGTTTGCAAAGAGATATTAATTGAGTATTGGAGTTATTGCAAATA
CTTCAGAGATGTCCCGAAATACAACCATCAAAGTTAGCAGCTCTACAGCGTATACTGCAG
TCAGACTTTTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATT
AATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCC
GCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTA
GGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATT
CCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTT
AATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCA
CAAGGTACTGTGAAACTTGTCGTAAGGTATACACCACGTATTCTTGAAGAGATGGAAGCA
CGCTTTGACAAACAGAAAGCTCGACGTCGACAACTTAATTAACAGAAATTTAGAGACGTG
TGTGCATAATGCTGTGCTGTTATAATTCACTAAATTATTTAGACTAACATACTTNCATTA
TACAGCACAGATTAAGTTTTCGAACTCTTTTTTNCCCACTCTNTACATNCTCATTAGAAT
CTGTAAATAAAATTTGTGGTATATTAGNTNTGAACATTNCGNCGATTTTGAATTCTTTAT
GGATTNNGCTTACATGCTGNAGTCTATAGACAAATATTAAATTTTATGCACCATATTTGA
TGACTTAGATATAATTTTTG

consensusID : consensus_8548#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 798
fasta sequence

                              [GAAATACAACCATCAAAGTTAGCAGCTCTACAGCGTATACTGCAGTCAGACTTTTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATGNTTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCACAAGGTACTGTGAAACTTGTCGTAAGGTATACACCACGTATTCTTGAAGAGATGGAAGCACGCTTTGACAAACAGAAAGCTCGACGTCGACAACTTAATTAACAGAAATTTAGAGACGTGTGTGCATAATTCTGTGTTGTATAATTAACCAAATTTGGTTAGACTAGCATACTTCCATTATACAGCACAGATTAAGTTTTCGAACTCTTTACATTCTCATTAGAATCTGTAAATAATTTGTTGTTTATATTAGTTTTTGATCATTTCGTCGATTTTGAATTCTTTATTGTAATTTGCTTTATCATGCTGTAGTCATATAGACAAAATATTTAATTTTTATGCAACAATAATTTTGATGACTTAGAATATAATTTTTGTNCAAACTATAAAAAA]

[+] EMBL AF030965             [GAAATACAACCATCAAAGTTAGCAGCTCTACAGCGTATACTGCAGTCAGACTTTTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATGNTTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCACAAGGTACTGTGAAACTTGTCGTAAGGTATACACCACGTATTCTTGAAGAGATGGAAGCACGCTTTGACAAACAGAAAGCTCGACGTCGACAACTTAATTAACAGAAATTTAGAGACGTGTGTGCATAATTCTGTGTTGTATAATTAACCAAATTTGGTTAGACTAGCATACTTCCATTATACAGCACAGATTAAGTTTTCGAACTCTTTACATTCTCATTAGAATCTGTAAATAATTTGTTGTTTATATTAGTTTTTGATCATTTCGTCGATTTTGAATTCTTTATTGTAATTTGCTTTATCATGCTGTAGTCATATAGACAAAATATTTAATTTTTATGCAACAATAATTTTGATGACTTAGAATATAATTTTTGTNCAAACTATAAAAAA]




>consensus_8548#1
GAAATACAACCATCAAAGTTAGCAGCTCTACAGCGTATACTGCAGTCAGACTTTTGCGAC
ATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTCAGAAGAG
GTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCCGCAAGTGAGGGACAC
GCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATG
GGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATGNTTCCTGGTGGTGTTGCA
GATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTG
GAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCACAAGGTACTGTGAAA
CTTGTCGTAAGGTATACACCACGTATTCTTGAAGAGATGGAAGCACGCTTTGACAAACAG
AAAGCTCGACGTCGACAACTTAATTAACAGAAATTTAGAGACGTGTGTGCATAATTCTGT
GTTGTATAATTAACCAAATTTGGTTAGACTAGCATACTTCCATTATACAGCACAGATTAA
GTTTTCGAACTCTTTACATTCTCATTAGAATCTGTAAATAATTTGTTGTTTATATTAGTT
TTTGATCATTTCGTCGATTTTGAATTCTTTATTGTAATTTGCTTTATCATGCTGTAGTCA
TATAGACAAAATATTTAATTTTTATGCAACAATAATTTTGATGACTTAGAATATAATTTT
TGTNCAAACTATAAAAAA

consensusID : consensus_8548#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [TTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCGGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACTTTTGAAATTAGCACAGCGTATACTGCAGTCAGACTTTTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTC]

[+] EMBL CD169058             [TTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCGGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACTTTTGAAATTAGCACAGCGTATACTGCAGTCAGACTTTTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTC]




>consensus_8548#2
TTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTC
AGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCGGCTTTTGCCGCAAGTGA
GGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAA
TGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTCCTGGTGG
TGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAAT
TTCTGTGGAGAGTGAACTTTTGAAATTAGCACAGCGTATACTGCAGTCAGACTTTTGCGA
CATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATTAATGGGTCAGAAGA
GGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCCGCAAGTGAGGGACA
CGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTAT
GGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTC

consensusID : consensus_8548#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [GACCTACTTTTATTCTTCATTTTATTTAAATTCTTATTAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTCGCAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCACAAGGTGATGTGCCGTATATTTTAAGATGTTTTTTCTGTGTTAATTCATGTCGTTTTTTGTTAGTTTTATGTTACTGTCCTTATCTAATAATCACGTTTTCACAATGCTAGAACATTCATCTATATATACTTGTTCTAATTCACATTATGTGTAGTATTTAATATACTCATAATCACTTGTTAT]

[+] EMBL CD178147             [GACCTACTTTTATTCTTCATTTTATTTAAATTCTTATTAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTCGCAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCACAAGGTGATGTGCCGTATATTTTAAGATGTTTTTTCTGTGTTAATTCATGTCGTTTTTTGTTAGTTTTATGTTACTGTCCTTATCTAATAATCACGTTTTCACAATGCTAGAACATTCATCTATATATACTTGTTCTAATTCACATTATGTGTAGTATTTAATATACTCATAATCACTTGTTAT]




>consensus_8548#3
GACCTACTTTTATTCTTCATTTTATTTAAATTCTTATTAGGTGAAAGCAAGTGCAACAGC
TAAAGCTACTGTCGCAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGA
ACTACCAAAAACTAATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTC
ACCTATTTACATAAGTCGGATTATTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAA
ACGTGGTGATCAGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACATCATGAAAG
AGCTGTTGAACTTTTGAAATTAGCACAAGGTGATGTGCCGTATATTTTAAGATGTTTTTT
CTGTGTTAATTCATGTCGTTTTTTGTTAGTTTTATGTTACTGTCCTTATCTAATAATCAC
GTTTTCACAATGCTAGAACATTCATCTATATATACTTGTTCTAATTCACATTATGTGTAG
TATTTAATATACTCATAATCACTTGTTAT

consensusID : consensus_8548#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [TGAAGACTGTGACTTTGAATACNCAGTCTTGAACTTCGTAGGAAACACACNATCTGAGAGNTGGAGACGCTTGNCAACAGAAGCTNACTCGNCACTTAATTAACAGAATTAGAGACGTGTGTGCATAATTCTGTGTTGNATAATTACCAATTTGGTTAGACTAGCATACTCCATNATACAGCACAGATAAGTTTNCGACTCTTTACATTCTCATAGAATCTGTAAATAATTTGTTGTTTATATTAGTTTTGATCATTTCGTCGATTNTGAATCTTTATGTAATTGCTTTATCATGCTGTAGTCATATAGACAAATATTAATTTTATGCAACAATAATT]

[-] EMBL SM712                [TGAAGACTGTGACTTTGAATACNCAGTCTTGAACTTCGTAGGAAACACACNATCTGAGAGNTGGAGACGCTTGNCAACAGAAGCTNACTCGNCACTTAATTAACAGAATTAGAGACGTGTGTGCATAATTCTGTGTTGNATAATTACCAATTTGGTTAGACTAGCATACTCCATNATACAGCACAGATAAGTTTNCGACTCTTTACATTCTCATAGAATCTGTAAATAATTTGTTGTTTATATTAGTTTTGATCATTTCGTCGATTNTGAATCTTTATGTAATTGCTTTATCATGCTGTAGTCATATAGACAAATATTAATTTTATGCAACAATAATT]




>consensus_8548#4
TGAAGACTGTGACTTTGAATACNCAGTCTTGAACTTCGTAGGAAACACACNATCTGAGAG
NTGGAGACGCTTGNCAACAGAAGCTNACTCGNCACTTAATTAACAGAATTAGAGACGTGT
GTGCATAATTCTGTGTTGNATAATTACCAATTTGGTTAGACTAGCATACTCCATNATACA
GCACAGATAAGTTTNCGACTCTTTACATTCTCATAGAATCTGTAAATAATTTGTTGTTTA
TATTAGTTTTGATCATTTCGTCGATTNTGAATCTTTATGTAATTGCTTTATCATGCTGTA
GTCATATAGACAAATATTAATTTTATGCAACAATAATT

consensusID : consensus_8548#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence

                              [TATGAAACTTGTTGTAAGGTATACACCATGTATTCTTGAAGAGATGGAAGTACGTTTTGACAAAATAGAAAGCTCGACGTCGACAACTTAATTAACGTTAATTTAGAGACGTGTGTGCATAATTCAGTGTTGTATAATTCACCAAATTTGGTTAGACTAACATACTTCCATTTATACAGCACAGATTAAGTTTTCCAACTCTTTACATTCTCATTAGAATCTGTAAATAATTTGTTGTTTATATTAGTTTTTGATCATTTGGTTGATTNTCAATCCTCTATTGTAATTTGCTTTATAATTCTGTAGTCAT]

[-] EMBL SMAA40567            [TATGAAACTTGTTGTAAGGTATACACCATGTATTCTTGAAGAGATGGAAGTACGTTTTGACAAAATAGAAAGCTCGACGTCGACAACTTAATTAACGTTAATTTAGAGACGTGTGTGCATAATTCAGTGTTGTATAATTCACCAAATTTGGTTAGACTAACATACTTCCATTTATACAGCACAGATTAAGTTTTCCAACTCTTTACATTCTCATTAGAATCTGTAAATAATTTGTTGTTTATATTAGTTTTTGATCATTTGGTTGATTNTCAATCCTCTATTGTAATTTGCTTTATAATTCTGTAGTCAT]




>consensus_8548#5
TATGAAACTTGTTGTAAGGTATACACCATGTATTCTTGAAGAGATGGAAGTACGTTTTGA
CAAAATAGAAAGCTCGACGTCGACAACTTAATTAACGTTAATTTAGAGACGTGTGTGCAT
AATTCAGTGTTGTATAATTCACCAAATTTGGTTAGACTAACATACTTCCATTTATACAGC
ACAGATTAAGTTTTCCAACTCTTTACATTCTCATTAGAATCTGTAAATAATTTGTTGTTT
ATATTAGTTTTTGATCATTTGGTTGATTNTCAATCCTCTATTGTAATTTGCTTTATAATT
CTGTAGTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8548#4      ------------------------------------------------------------
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      ------------------------------------------------------------
consensus_8548#0      AAACTGGAATCATTAAGTTTGCAAAGAGATATTAATTGAGTATTGGAGTTATTGCAAATA 60
consensus_8548#2      ------------------------------------------------------------
consensus_8548#3      ------------------------------------------------------------
                                                                                  

consensus_8548#4      ------------------------------------------------------------
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      ---------------GAAATACAACCATCAAAGTTAGCAGCTCTACAGCGTATACTGCAG 45
consensus_8548#0      CTTCAGAGATGTCCCGAAATACAACCATCAAAGTTAGCAGCTCTACAGCGTATACTGCAG 120
consensus_8548#2      ------------------------------------------------------------
consensus_8548#3      ------------------------------------------------------------
                                                                                  

consensus_8548#4      ------------------------------------------------------------
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      TCAGACTTTTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATT 105
consensus_8548#0      TCAGACTTTTGCGACATGATTCGTGAAGTTTATGAACATATATACACAACTGTTGATATT 180
consensus_8548#2      ------------------------------------------------------------
consensus_8548#3      ------------------------------------------------------------
                                                                                  

consensus_8548#4      ------------------------------------------------------------
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      AATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCC 165
consensus_8548#0      AATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTGCAGCTTTTGCC 240
consensus_8548#2      ------------------------------------------------------------
consensus_8548#3      ------------------------------------------------------------
                                                                                  

consensus_8548#4      ------------------------------------------------------------
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      GCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTA 225
consensus_8548#0      GCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTAATGAAGGTCTA 300
consensus_8548#2      ------------------------------------------------------------
consensus_8548#3      ------------------------------------------------------------
                                                                                  

consensus_8548#4      ------------------------------------------------------------
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      GGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATGNTT 285
consensus_8548#0      GGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATAAGTCGGATTATT 360
consensus_8548#2      ------------------------------------------------------------
consensus_8548#3      ------------------------------------------------------------
                                                                                  

consensus_8548#4      ------------------------------------------------------------
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      CCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTT 345
consensus_8548#0      CCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGATCAGTTGCTTTCAGTT 420
consensus_8548#2      ------------------------------------------------------------
consensus_8548#3      ------------------------------------------------------------
                                                                                  

consensus_8548#4      ------------------------------------------------------------
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      AATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCA 405
consensus_8548#0      AATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGTTGAACTTTTGAAATTAGCA 480
consensus_8548#2      -------------------TTGCGACATGATTCGTGAAGTTTATGAACATATATACACAA 41
consensus_8548#3      ---------------------------------------------GACCTACTTTTATTC 15
                                                                                  

consensus_8548#4      ----------TGAAGACTGTGACTTTGAATACNCAGTCTTGAACTTCGTAGGAA---ACA 47
consensus_8548#5      --------TATGAAACTTGTTGTAAGGTATACACCATGT--ATTCTTGAAGAGATGGAAG 50
consensus_8548#1      CAAGGTACTGTGAAACTTGTCGTAAGGTATACACCACGT--ATTCTTGAAGAGATGGAAG 463
consensus_8548#0      CAAGGTACTGTGAAACTTGTCGTAAGGTATACACCACGT--ATTCTTGAAGAGATGGAAG 538
consensus_8548#2      CTGTTGATATTAATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTG 101
consensus_8548#3      TTCATTTTATTTA-AATTCTTATTAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTCG 74
                                * *    *        *   *  *       *       **  *      

consensus_8548#4      CACNATCTG-----AGAGNTGGAGACGCTTGNCAACAGAAGCTNACTCGNCACTTAATTA 102
consensus_8548#5      TACGTTTTG-----ACAAAATAGAAAGCTCGACGTCGACAACTTAATTAACG-TTAATT- 103
consensus_8548#1      CACGCTTTG-----ACAAAC-AGAAAGCTCGACGTCGACAACTTAATTAACA-GAAATT- 515
consensus_8548#0      CACGCTTTG-----ACAAAC-AGAAAGCTCGACGTCGACAACTTAATTAACA-GAAATT- 590
consensus_8548#2      CGGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTA 161
consensus_8548#3      CAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTA 134
                           * **     *         * ***   *  *      *       *    ** * 

consensus_8548#4      ACAGAATTAGAGACGTGTGTGCATAATTCTGTGTTGN--ATAATT-ACCAA-TTTGGTTA 158
consensus_8548#5      -------TAGAGACGTGTGTGCATAATTCAGTGTTGT--ATAATTCACCAAATTTGGTTA 154
consensus_8548#1      -------TAGAGACGTGTGTGCATAATTCTGTGTTGT--ATAATTAACCAAATTTGGTTA 566
consensus_8548#0      -------TAGAGACGTGTGTGCATAATGCTGTGCTGTT-ATAATTCACTAA-ATTATTTA 641
consensus_8548#2      ATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTA-TTTACATA 220
consensus_8548#3      ATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTA-TTTACATA 193
                             *  **   *   **         **   *   * ** * **  *  **   **

consensus_8548#4      GACTAGCATACTCCA--TNATACAGCACAG----AT--AAGTTTN--------------C 196
consensus_8548#5      GACTAACATACTTCCATTTATACAGCACAG----ATTAAGTTTTC--------------C 196
consensus_8548#1      GACTAGCATACTTCCA-TTATACAGCACAG----ATTAAGTTTTC--------------G 607
consensus_8548#0      GACTAACATACTTNCA-TTATACAGCACAG----ATTAAGTTTTCGAACTCTTTTTTNCC 696
consensus_8548#2      AGTCGGATTATTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGA--TC 278
consensus_8548#3      AGTCGGATTATTCCTGGTGGTGTTGCAGATCGTCATGGTGGTTTAAAACGTGGTGA--TC 251
                              ** *     *  *   *** *     **     ***                

consensus_8548#4      GACTCTTTACATTCTCAT-AGAATCTGTAAATAATTTGTTGTTTATATTAGTTTT-GATC 254
consensus_8548#5      AACTCTTTACATTCTCATTAGAATCTGTAAATAATTTGTTGTTTATATTAGTTTTTGATC 256
consensus_8548#1      AACTCTTTACATTCTCATTAGAATCTGTAAATAATTTGTTGTTTATATTAGTTTTTGATC 667
consensus_8548#0      CACTCTNTACATNCTCATTAGAATCTGTAAATAAAATTTGTGGTATATTAGNTNT-GAAC 755
consensus_8548#2      AGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACTTTTGAAATTAGCACA---GC 335
consensus_8548#3      AGTTGCTTTCAGTTAATGGAATTTCTGTGGAGAGTGAACATCATGAAAGAGCTGT---TG 308
                         *   * **        *   *****  * *             *  **         

consensus_8548#4      ATTTCGTCGATTNTGAATCTTT--ATGTAATT-GC----TTTATCATGCTGTAGTCATAT 307
consensus_8548#5      ATTTGGTTGATTNTCAATCCTCTATTGTAATTTGC----TTTATAATTCTGTAGTCAT-- 310
consensus_8548#1      ATTTCGTCGATTTTGAATTCTTTATTGTAATTTGC----TTTATCATGCTGTAGTCATAT 723
consensus_8548#0      ATTNCGNCGATTTTGAATTCTTT-ATGGATTNNGC----TTA--CATGCTGNAGTC-TAT 807
consensus_8548#2      GTATACTGCAGTCAGACTTTTGCGACATGATTCGTGAAGTTTATGAACATATATACACAA 395
consensus_8548#3      AACTTTTGAAATTAGCACAAGGTGATGTG--CCGTATATTTTAAGATGTTTTTTCTGTGT 366
                               * *                     *     **    *   *          

consensus_8548#4      AGACAAA---TATTAATTTTATGCAACAATAATT-------------------------- 338
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      AGACAAAATATTTAATTTTTATGCAACAATAATTTTGATGACTTAGAATATAATTTTTGT 783
consensus_8548#0      AGACAAA---TATTAAATTTTATGCACCATATTTGATGACTTAGATATAATTTTTG---- 860
consensus_8548#2      CTGTTGATATTAATGGGTCAGAAGAGGTGAAAGCAAGTGCAACAGCTAAAGCTACTGTTG 455
consensus_8548#3      TAATTCATGTCGTT---TTTTGTTAGTTTTATGTTACTGT-----CCTTATCTAATAATC 418
                                                                                  

consensus_8548#4      ------------------------------------------------------------
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      NCAAACTATAAAAAA--------------------------------------------- 798
consensus_8548#0      ------------------------------------------------------------
consensus_8548#2      CAGCTTTTGCCGCAAGTGAGGGACACGCTCATCCACGTGTTATAGAACTACCAAAAACTA 515
consensus_8548#3      ACGTTTTCAC----AATGCTAGA-ACATTCATCTATATATACTTGTTCTAATTCACATTA 473
                                                                                  

consensus_8548#4      ------------------------------------------------------------
consensus_8548#5      ------------------------------------------------------------
consensus_8548#1      ------------------------------------------------------------
consensus_8548#0      ------------------------------------------------------------
consensus_8548#2      -ATGAAGGTCTAGGTTTCAATGTTATGGGTGGTAAAGAACAAAACTCACCTATTTACATA 574
consensus_8548#3      TGTGTAGTATTTAATATACTCATAATCACTTGTTAT------------------------ 509
                                                                                  

consensus_8548#4      -------------
consensus_8548#5      -------------
consensus_8548#1      -------------
consensus_8548#0      -------------
consensus_8548#2      AGTCGGATTATTC 587
consensus_8548#3      -------------