cluster # 8554

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8554 cluster # 8554 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8554#0 length = 793 sequences # 4

consensus_8554#1 length = 371 sequences # 1
consensus_8554#2 length = 369 sequences # 2

consensusID : consensus_8554#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 793
fasta sequence

                              [AGAGTGAGAAGTTAAATTTCTTAATGGAGGTTCTGTTGATGATGAACCCAGTAAAATAAAAAATACACTTCGAGTTATTCGGTTATGTAACAGTTAGTTAGACAGAGGGACGGTGGTTGTCGCTAAATATTACCATAGTAAAAATCTATTGGGAGTTAACAAAGCTATGTAACGGATATGTGCTGAAGATTGACCTCAGATCCACCGCAAGTCAATATTGGTTTCCTTCTCATTTAGGGACTCCATATCCACAACAGGACCACGAACCCGGATAGCAGATTAGGACAGGTTCTCAGGCAACCCAGTTCATACTGACGACAACATGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCATGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCTTCTTCACGCCTGAATTTTATATAAACGTTCCCAACTAGATGATCACCAAGATTATCACAAACATTCATTTCCTCTATTTCCCCATACTTCTCCTCACACTCAACAAAAACCTCCTCGAAAAATCCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTAATGTGTGACCCATCAGCACTCTGCGCTGAATTTTGAGGAGCTATATACAGGTTTTGCAGCAAAATGGTCTGACCAAAAGACGGTTTGTTATGAAGCCTTGAACACTGCTCTCCGTGACGACATGCACCGATTTTGAAGTAGAACGAGCAGTTCACTTTATCTTTTTCCGTACCAAATATCGATGCTAAATACTCCGCCATGTTCTTAAGCG]

[-] EMBL CD140788             [AGAGTGAGAAGTTAAATTTCTTAATGGAGGTTCTGTTGATGATGAACCCAGTAAAATAAAAAATACACTTCGAGTTATTCGGTTATGTAACAGTTAGTTAGACAGAGGGACGGTGGTTGTCGCTAAATATTACCATAGTAAAAATCTATTGGGAGTTAACAAAGCTATGTAACGGATATGTGCTGAAGATTGACCTCAGATCCACCGCAAGTCAATATTGGTTTCCTTCTCATTTAGGGACTCCATATCCACAACAGGACCACGAACCCGGATAGCAGATTAGGACAGGTTCTCAGGCAACCCAGTTCATACTGACGACAACATGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCATGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCTTCTTCACGCCTGAA TTTATATAAACGTT                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD148397             [                                                                                                                                                                                                                                                                                                                                   TGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCATGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCTTCTTCACGCCTGAATTTTATATAAACGTTCCCAACTAGATGATCACCAAGATTATCACAAACATTCATTTCCTCTATTTCCCCATACTTCTCCTCACACTCAACAAAAACCTCCTCGAAAAATCCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTAATGTGTGACCCATCAGCACTCTGCGCTGAATTTTGAGGAGCTATATACAGGTTTTGCAGCAAAATGGTCTGACCAAAAGACGGTTTGTTATGAAGCCTTGAACACTGCTCTCCGTGACGACATGCACCGATTTTGAAGTAGAACGAGCAGTTCACTTTATCTTTTTCCGTACCAAATATCGATGCTAAATACTCCGCCATGTTCTTAAGCG]
[+] EMBL CD148414             [                                                                                                                                                                                                                                                                                                                                   TGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCATGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCTTCTTCACGCCTGAATTTTATATAAACGTTCCCAACTAGATGATCACCAAGATTATCACAAACATTCATTTCCTCTATTTCCCCATACTTCTCCTCACACTCAACAAAAACCTCCTCGAAAAATCCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTAATGTGTGACCCATCAGCACTCTGCGCTGAATTTTGAGGAGCTATATACAGGTTTTGCAGCAAAATGGTCTGACCAAAAGACGGTTTGTTATGAAGCCTTGAACACTGCTCTCCGTGACGACATGCACCGATTTTGAAGTAGAACGAGCAGTTCACTTTATCTTTTTCCGTACCAAATATCGATGCTAAATACTCCGCCATGTTCTTAAGCG]
[-] EMBL CD180709             [                                                                                                                                                                                                                                                                                                                                                                                                     ATTTAAATCCTGAACAGCTTTTTCAGCATCTTCTTCACGCCTGAATTTTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACACACATTCATTTCTTCTATTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCTCGAAAAATTCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCACTCTGCGCTGTATTTTGAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAAGACGGTTTGTTATGAAGTCTGGAACATTGCTCTCCGTGGCGGCATGCACCGATTTTGAAGTAGAACGAGCAGTTTACTTTATCT                                                 ]




>consensus_8554#0
AGAGTGAGAAGTTAAATTTCTTAATGGAGGTTCTGTTGATGATGAACCCAGTAAAATAAA
AAATACACTTCGAGTTATTCGGTTATGTAACAGTTAGTTAGACAGAGGGACGGTGGTTGT
CGCTAAATATTACCATAGTAAAAATCTATTGGGAGTTAACAAAGCTATGTAACGGATATG
TGCTGAAGATTGACCTCAGATCCACCGCAAGTCAATATTGGTTTCCTTCTCATTTAGGGA
CTCCATATCCACAACAGGACCACGAACCCGGATAGCAGATTAGGACAGGTTCTCAGGCAA
CCCAGTTCATACTGACGACAACATGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCA
TGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCT
TCTTCACGCCTGAATTTTATATAAACGTTCCCAACTAGATGATCACCAAGATTATCACAA
ACATTCATTTCCTCTATTTCCCCATACTTCTCCTCACACTCAACAAAAACCTCCTCGAAA
AATCCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTAATGTGTGACCCATCAGCA
CTCTGCGCTGAATTTTGAGGAGCTATATACAGGTTTTGCAGCAAAATGGTCTGACCAAAA
GACGGTTTGTTATGAAGCCTTGAACACTGCTCTCCGTGACGACATGCACCGATTTTGAAG
TAGAACGAGCAGTTCACTTTATCTTTTTCCGTACCAAATATCGATGCTAAATACTCCGCC
ATGTTCTTAAGCG

consensusID : consensus_8554#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTGAAGCGGCAACTACATTTTTATTGATAAATGATGCAGATCAGAAAGCTGTGGTCACATGAGCAAGTGTAAGCGAGCGAAGCAAAGATGATGCATAGTGGAGATGGCTGGGAAGCCAACTCGAGAGCGAAGCGAAAACAGTGCGTATTGGAGATTGGCGGGGAAGCCAACTCACTATGAGCAAGCATTACTCAATATTTATAATCAGACAAAAATGAATGACAGACATATGATGAATAAGATACGAAGTGTGCATACACATGCGCTCATATAAAAAGGTAGTCAAGGTTAATAAGCGAATAAATAACAAGATCAAAATATGACTCATGATGTATAGGAGAATTAGCTTTGG]

[+] EMBL AI395499             [TTTTTTTTTTTTTTTTTTTTTGAAGCGGCAACTACATTTTTATTGATAAATGATGCAGATCAGAAAGCTGTGGTCACATGAGCAAGTGTAAGCGAGCGAAGCAAAGATGATGCATAGTGGAGATGGCTGGGAAGCCAACTCGAGAGCGAAGCGAAAACAGTGCGTATTGGAGATTGGCGGGGAAGCCAACTCACTATGAGCAAGCATTACTCAATATTTATAATCAGACAAAAATGAATGACAGACATATGATGAATAAGATACGAAGTGTGCATACACATGCGCTCATATAAAAAGGTAGTCAAGGTTAATAAGCGAATAAATAACAAGATCAAAATATGACTCATGATGTATAGGAGAATTAGCTTTGG]




>consensus_8554#1
TTTTTTTTTTTTTTTTTTTTTGAAGCGGCAACTACATTTTTATTGATAAATGATGCAGAT
CAGAAAGCTGTGGTCACATGAGCAAGTGTAAGCGAGCGAAGCAAAGATGATGCATAGTGG
AGATGGCTGGGAAGCCAACTCGAGAGCGAAGCGAAAACAGTGCGTATTGGAGATTGGCGG
GGAAGCCAACTCACTATGAGCAAGCATTACTCAATATTTATAATCAGACAAAAATGAATG
ACAGACATATGATGAATAAGATACGAAGTGTGCATACACATGCGCTCATATAAAAAGGTA
GTCAAGGTTAATAAGCGAATAAATAACAAGATCAAAATATGACTCATGATGTATAGGAGA
ATTAGCTTTGG

consensusID : consensus_8554#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 369
fasta sequence

                              [TTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACACACATTCATTTCTTCTATTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCTCGAAAAATTCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCACTCTGCGCTGTATTTTGAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAAGACGGTTTGTTATGAAGTCTGGAACATTGCTCTCCGTGGCGGCATGCACCGATTTTGAAGTAGAACGAGCAGTTTACTTTATCTTTTTCCGTACCAGATATAGACGCTAAGTACTCCGCCATGTTCTTGAGGATTAAATTGCGCC]

[-] EMBL CD123204             [TTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACACACATTCATTTCTTCTATTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCTCGAAAAATTCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCACTCTGCGCTGTATTTTGAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAAGACGGTTTGTTATGAAGTCTGGAACATTGCTCTCCGTGGCGGCATGCACCGATTTTGAAGTAGAACGAGCAGTTTACTTTATCTTTTTCCGTACCAGATATAGACGCTAAGTACTCCGCCATGTTCTTGAGGATTAAATTGCGCC]
[-] EMBL CD123244             [TTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACACACATTCATTTCTTCTATTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCCCGAAAAATTCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCACTCTGCGCTGTATTTTGAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAAGACGGTTTGTTATGAAGTCTGGAACATTGCTCTCCGTGGCGGCATGCACCGATTTTGAAGTAGAACGAGCAGTTTACTTTATCTTTTTCCGTACCAAATATAGACGCTAAGTACTCCGCCATGTTCTTGAGGATTAAATTGCGCC]




>consensus_8554#2
TTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACACACATTCATTTCTTCTA
TTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCTCGAAAAATTCGTCGAAGATTT
GCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCACTCTGCGCTGTATTTT
GAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAAGACGGTTTGTTATGAA
GTCTGGAACATTGCTCTCCGTGGCGGCATGCACCGATTTTGAAGTAGAACGAGCAGTTTA
CTTTATCTTTTTCCGTACCAGATATAGACGCTAAGTACTCCGCCATGTTCTTGAGGATTA
AATTGCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8554#0      AGAGTGAGAAGTTAAATTTCTTAATGGAGGTTCTGTTGATGATGAACCCAGTAAAATAAA 60
consensus_8554#2      ------------------------------------------------------------
consensus_8554#1      ------------------------------------------------------------
                                                                                  

consensus_8554#0      AAATACACTTCGAGTTATTCGGTTATGTAACAGTTAGTTAGACAGAGGGACGGTGGTTGT 120
consensus_8554#2      ------------------------------------------------------------
consensus_8554#1      ------------------------------------------------------------
                                                                                  

consensus_8554#0      CGCTAAATATTACCATAGTAAAAATCTATTGGGAGTTAACAAAGCTATGTAACGGATATG 180
consensus_8554#2      ------------------------------------------------------------
consensus_8554#1      ------------------------------------------------------------
                                                                                  

consensus_8554#0      TGCTGAAGATTGACCTCAGATCCACCGCAAGTCAATATTGGTTTCCTTCTCATTTAGGGA 240
consensus_8554#2      ------------------------------------------------------------
consensus_8554#1      ------------------------------------------------------------
                                                                                  

consensus_8554#0      CTCCATATCCACAACAGGACCACGAACCCGGATAGCAGATTAGGACAGGTTCTCAGGCAA 300
consensus_8554#2      ------------------------------------------------------------
consensus_8554#1      ------------------------------------------------------------
                                                                                  

consensus_8554#0      CCCAGTTCATACTGACGACAACATGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCA 360
consensus_8554#2      ------------------------------------------------------------
consensus_8554#1      ------------------------------------------------------------
                                                                                  

consensus_8554#0      TGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCT 420
consensus_8554#2      ------------------------------------------------------------
consensus_8554#1      ------------------------------------------------------------
                                                                                  

consensus_8554#0      TCTTCACGCCTGAATTTTATATAAACGTTCCCAACTAGATGATCACCAAGATTATCACAA 480
consensus_8554#2      ----------------TTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACAC 44
consensus_8554#1      TTTTTTTTTTTTTTTTTTTTTGAAGCGG---CAACTACATTTTTATTGATAA-ATGATGC 56
                                      ** *  ** **    ****** **  * *   * *  ** *   

consensus_8554#0      ACATTCATTTCCTCTATTTCCCCATACTTCTCCTCACACTCAACAAAAACCTCCTCGAAA 540
consensus_8554#2      ACATTCATTTCTTCTATTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCTCGAAA 104
consensus_8554#1      AGATCAGAAAGCTGTGGTCACATGAGCAAGTGTAAGCGAGCGAAGCAAAGAT----GATG 112
                      * **        * *  *  *     *   *     *   * *   * *  *    **  

consensus_8554#0      AATCCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTAATGTGTGACCCATCAGCA 600
consensus_8554#2      AATTCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCA 164
consensus_8554#1      CATAGTGGAGATGGCTGGGAAGCCAACTCGAGAGCGAAGCGAAAACAGTGCGTATTGGAG 172
                       **       *    **   ***     *    *  * *   *       *  **  *  

consensus_8554#0      CTCTGCGCTGAATTTTGAGGAGCTATATACAGGTTTTGCAGCAAAATGGTCTGACCAAAA 660
consensus_8554#2      CTCTGCGCTGTATTTTGAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAA 224
consensus_8554#1      ATTGGCGGGGAAGCC-AACTCACTATGAGCAAGCATTACT-CAATATT-TATAATCAGAC 229
                       *  ***  * *     *    ****   **    **    *** **  * * * *  * 

consensus_8554#0      GACGGTTTGTTATGAAGCCTTGAACACTGCTCTCCGTGACG-ACATGCACCGATTTTGAA 719
consensus_8554#2      GACGGTTTGTTATGAAGTCTGGAACATTGCTCTCCGTGGCG-GCATGCACCGATTTTGAA 283
consensus_8554#1      AAAAATGAATGACAGACATATGATGAATAAGATACGAAGTGTGCATACACATGCGCTCAT 289
                       *   *   * *   *     **  * *    * **    *  *** ***      * * 

consensus_8554#0      GTAGAACGAGCAGTTCACTTTATCTTTTTCCGTACCAAATATCGATGCTAAATAC--TCC 777
consensus_8554#2      GTAGAACGAGCAGTTTACTTTATCTTTTTCCGTACCAGATATAGACGCTAAGTAC--TCC 341
consensus_8554#1      ATAAAAAG-GTAGTCAAGGTTA---ATAAGCGAATAAATAACAAGATCAAAATATGACTC 345
                       ** ** * * ***  *  ***    *   ** *  *   *      * ** **     *

consensus_8554#0      GCCATGTTCTTAAGCG------------ 793
consensus_8554#2      GCCATGTTCTTGAGGATTAAATTGCGCC 369
consensus_8554#1      ATGATGTATAGGAGAATTAGCTTTGG-- 371
                         ****     **