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Schistosoma mansoni
cluster # 8559 cluster # 8559       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8559#0 length = 1143 sequences # 6  
consensus_8559#1 length = 396 sequences # 1  

consensusID : consensus_8559#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1143
fasta sequence
                              [TTGCTTCGTAAATATGCAAGTAATGAATTATCAAAGAGCTGTTATATATGCAGTCTATGTTCTGAAAGAATTGTTTATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCAGATCTATCGAACCCTAATTTTCTGA-CTCACTTTGCAATTGTTCATAATCGTTTTTCTACAAACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGTCGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTTCCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAAAAGCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTAAAATCC-AAATTGCTACC-AACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACAAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATT]

[+] EMBL CD155383             [TTGCTTCGTAAATATGCAAGTAATGAATTATCAAAGAGCTGTTATATATGCAGTCTATGTTCTGAAAGAATTGTTTATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCAGATCTATCGAACCCTAATTTTCTGA CTCACTTTGCAATTGTTCATAATCGTTTTTCTACAAACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGTCGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCCAGCTGGTGACTACAGTCTTCCAGAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD167497             [                                                                           TATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCAGATCTATCGAACCCTAATTTTCTGA CTCACTTTGCAATTGTTCATAATCGTTTTTCTAC AACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATACACAC CTACGTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD167503             [                                                                                                                                         TTTTCTGAGCTCACTTTGCAATTGTTCATAATCGTTTTTCTACAAACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGTCGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTTCCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD167548             [                                                                                                                                                                                                                                                                                                                                             ATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACGACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTTCCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATAC AAAAGGTCGCCTAAAAGCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTAAAATCC AAATTGCTACC AACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATT                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD138459             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAANAGCTGGACGTCTAT                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD129360             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTCTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAAAAGCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTAAAATCCAAAATTGCTACCAAACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACAAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATT]


>consensus_8559#0 TTGCTTCGTAAATATGCAAGTAATGAATTATCAAAGAGCTGTTATATATGCAGTCTATGT TCTGAAAGAATTGTTTATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCA GATCTATCGAACCCTAATTTTCTGACTCACTTTGCAATTGTTCATAATCGTTTTTCTACA AACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAA ATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGT CGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCT GATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTT CCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGT GAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGG GATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGT AATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGT GAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAAAA GCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTA AAATCCAAATTGCTACCAACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATTT GCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTATAAGAGAATTACAACGCT CGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATAT CAATCTTCTAATTTTGCCCATGTTGAAAACTAGCAAAGAAGCTCTAGGATCTATGGGGAA TGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCA GTTATTTGCTCAGGTCACAAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGAC ATT



consensusID : consensus_8559#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence
                              [TGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCATATAAACATGGTTACTCTGTTTCAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACANAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATTGATGTGTCCTATCGGACCACAGAAAAATATTCTG]

[+] EMBL CD181172             [TGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCATATAAACATGGTTACTCTGTTTCAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACANAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATTGATGTGTCCTATCGGACCACAGAAAAATATTCTG]


>consensus_8559#1 TGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTC CCCTGAACACTTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCC TTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAA CTAGCATATAAACATGGTTACTCTGTTTCAGCAAAGAAGCTCTAGGATCTATGGGGAATG ATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGT TATTTGCTCAGGTCACANAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACA TTGATGTGTCCTATCGGACCACAGAAAAATATTCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8559#0      TTGCTTCGTAAATATGCAAGTAATGAATTATCAAAGAGCTGTTATATATGCAGTCTATGT 60
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      TCTGAAAGAATTGTTTATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCA 120
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      GATCTATCGAACCCTAATTTTCTGACTCACTTTGCAATTGTTCATAATCGTTTTTCTACA 180
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      AACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAA 240
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      ATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGT 300
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      CGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCT 360
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      GATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTT 420
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      CCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGT 480
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      GAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGG 540
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      GATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGT 600
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      AATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGT 660
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      GAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAAAA 720
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      GCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTA 780
consensus_8559#1      ------------------------------------------------------------
                                                                                  

consensus_8559#0      AAATCCAAATTGCTACCAACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATTT 840
consensus_8559#1      ------------------------------TGTTTGGCTTAAAGAAGGAGCTATTGATTT 30
                                                    ******************************

consensus_8559#0      GCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACT-ATAAGAGAATTACAACGC 899
consensus_8559#1      GCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTTATAAGAGAATTACAACGC 90
                      ***************************************** ******************

consensus_8559#0      TCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATA 959
consensus_8559#1      TCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATA 150
                      ************************************************************

consensus_8559#0      TCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCA------------------------ 995
consensus_8559#1      TCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCATATAAACATGGTTACTCTGTTTCA 210
                      ************************************                        

consensus_8559#0      ---AAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAA 1052
consensus_8559#1      GCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAA 270
                         *********************************************************

consensus_8559#0      ATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACAAA-TCCTCCTATC 1111
consensus_8559#1      ATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACANAATCCTCCTATC 330
                      *********************************************** * **********

consensus_8559#0      GATCCATTTCGTGAACGCATTGTAATGACATT---------------------------- 1143
consensus_8559#1      GATCCATTTCGTGAACGCATTGTAATGACATTGATGTGTCCTATCGGACCACAGAAAAAT 390
                      ********************************                            

consensus_8559#0      ------
consensus_8559#1      ATTCTG 396
                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)