These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1143 fasta sequence [TTGCTTCGTAAATATGCAAGTAATGAATTATCAAAGAGCTGTTATATATGCAGTCTATGTTCTGAAAGAATTGTTTATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCAGATCTATCGAACCCTAATTTTCTGA-CTCACTTTGCAATTGTTCATAATCGTTTTTCTACAAACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGTCGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTTCCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAAAAGCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTAAAATCC-AAATTGCTACC-AACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACAAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATT] [+] EMBL CD155383 [TTGCTTCGTAAATATGCAAGTAATGAATTATCAAAGAGCTGTTATATATGCAGTCTATGTTCTGAAAGAATTGTTTATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCAGATCTATCGAACCCTAATTTTCTGA CTCACTTTGCAATTGTTCATAATCGTTTTTCTACAAACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGTCGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCCAGCTGGTGACTACAGTCTTCCAGAAGCT ] [-] EMBL CD167497 [ TATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCAGATCTATCGAACCCTAATTTTCTGA CTCACTTTGCAATTGTTCATAATCGTTTTTCTAC AACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATACACAC CTACGTGGC ] [+] EMBL CD167503 [ TTTTCTGAGCTCACTTTGCAATTGTTCATAATCGTTTTTCTACAAACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGTCGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTTCCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCT ] [-] EMBL CD167548 [ ATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACGACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTTCCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATAC AAAAGGTCGCCTAAAAGCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTAAAATCC AAATTGCTACC AACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATT ] [+] EMBL CD138459 [ GGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAANAGCTGGACGTCTAT ] [+] EMBL CD129360 [ AACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTCTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAAAAGCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTAAAATCCAAAATTGCTACCAAACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACAAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATT] consensusID : consensus_8559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [TGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCATATAAACATGGTTACTCTGTTTCAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACANAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATTGATGTGTCCTATCGGACCACAGAAAAATATTCTG] [+] EMBL CD181172 [TGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCATATAAACATGGTTACTCTGTTTCAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACANAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATTGATGTGTCCTATCGGACCACAGAAAAATATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8559#0 TTGCTTCGTAAATATGCAAGTAATGAATTATCAAAGAGCTGTTATATATGCAGTCTATGT 60 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 TCTGAAAGAATTGTTTATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCA 120 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 GATCTATCGAACCCTAATTTTCTGACTCACTTTGCAATTGTTCATAATCGTTTTTCTACA 180 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 AACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAA 240 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 ATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGT 300 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 CGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCT 360 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 GATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTT 420 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 CCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGT 480 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 GAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGG 540 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 GATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGT 600 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 AATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGT 660 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 GAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAAAA 720 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 GCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTA 780 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 AAATCCAAATTGCTACCAACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATTT 840 consensus_8559#1 ------------------------------TGTTTGGCTTAAAGAAGGAGCTATTGATTT 30 ****************************** consensus_8559#0 GCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACT-ATAAGAGAATTACAACGC 899 consensus_8559#1 GCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTTATAAGAGAATTACAACGC 90 ***************************************** ****************** consensus_8559#0 TCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATA 959 consensus_8559#1 TCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATA 150 ************************************************************ consensus_8559#0 TCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCA------------------------ 995 consensus_8559#1 TCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCATATAAACATGGTTACTCTGTTTCA 210 ************************************ consensus_8559#0 ---AAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAA 1052 consensus_8559#1 GCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAA 270 ********************************************************* consensus_8559#0 ATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACAAA-TCCTCCTATC 1111 consensus_8559#1 ATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACANAATCCTCCTATC 330 *********************************************** * ********** consensus_8559#0 GATCCATTTCGTGAACGCATTGTAATGACATT---------------------------- 1143 consensus_8559#1 GATCCATTTCGTGAACGCATTGTAATGACATTGATGTGTCCTATCGGACCACAGAAAAAT 390 ******************************** consensus_8559#0 ------ consensus_8559#1 ATTCTG 396 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||