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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1143 fasta sequence
[TTGCTTCGTAAATATGCAAGTAATGAATTATCAAAGAGCTGTTATATATGCAGTCTATGTTCTGAAAGAATTGTTTATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCAGATCTATCGAACCCTAATTTTCTGA-CTCACTTTGCAATTGTTCATAATCGTTTTTCTACAAACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGTCGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTTCCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAAAAGCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTAAAATCC-AAATTGCTACC-AACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACAAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATT]
[+] EMBL CD155383 [TTGCTTCGTAAATATGCAAGTAATGAATTATCAAAGAGCTGTTATATATGCAGTCTATGTTCTGAAAGAATTGTTTATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCAGATCTATCGAACCCTAATTTTCTGA CTCACTTTGCAATTGTTCATAATCGTTTTTCTACAAACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGTCGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCCAGCTGGTGACTACAGTCTTCCAGAAGCT ]
[-] EMBL CD167497 [ TATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCAGATCTATCGAACCCTAATTTTCTGA CTCACTTTGCAATTGTTCATAATCGTTTTTCTAC AACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATACACAC CTACGTGGC ]
[+] EMBL CD167503 [ TTTTCTGAGCTCACTTTGCAATTGTTCATAATCGTTTTTCTACAAACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAAATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGTCGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTTCCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCT ]
[-] EMBL CD167548 [ ATTTCCTATCATTGAACAAGGAATGTCTGATTCAGGATCATTTGACGACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTTCCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATAC AAAAGGTCGCCTAAAAGCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTAAAATCC AAATTGCTACC AACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATT ]
[+] EMBL CD138459 [ GGTGAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAANAGCTGGACGTCTAT ]
[+] EMBL CD129360 [ AACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGGGATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGTAATGGTCTTCGCCCAGCTCGTCTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGTGAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAAAAGCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTAAAATCCAAAATTGCTACCAAACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACAAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATT]
consensusID : consensus_8559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence
[TGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCATATAAACATGGTTACTCTGTTTCAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACANAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATTGATGTGTCCTATCGGACCACAGAAAAATATTCTG]
[+] EMBL CD181172 [TGTTTGGCTTAAAGAAGGAGCTATTGATTTGCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTTATAAGAGAATTACAACGCTCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATATCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCATATAAACATGGTTACTCTGTTTCAGCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAAATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACANAATCCTCCTATCGATCCATTTCGTGAACGCATTGTAATGACATTGATGTGTCCTATCGGACCACAGAAAAATATTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8559#0 TTGCTTCGTAAATATGCAAGTAATGAATTATCAAAGAGCTGTTATATATGCAGTCTATGT 60
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 TCTGAAAGAATTGTTTATAAAGGTTTATTCACCACAAAACAACTATGGAATTACTACGCA 120
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 GATCTATCGAACCCTAATTTTCTGACTCACTTTGCAATTGTTCATAATCGTTTTTCTACA 180
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 AACACTTTTCCATCATGGAGCCGTGCTCATCCACAGCGTATGATGGCTCATAACGGAGAA 240
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 ATCAACACACTACGTGGCAACGTAAATTACTGTCGAGCGCGTCAAAGTCTAATGTTCAGT 300
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 CGTTATTATACAAAGGCACAAATGTCAAAATTATTTCCTATCATTGAACAAGGAATGTCT 360
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 GATTCAGGATCATTTGACAACATGATGGAATTCTTGTGTCAAGCTGGTGACTACAGTCTT 420
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 CCAGAAGCTGTAATGATGATGATTCCTGAAGCATGGCATAATCTAGATCCAGAAAAAGGT 480
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 GAAATGTCTAGAGAGAAATGGAACTACTTCAAATGGGCTGCTAATAGTTTTGAACCTTGG 540
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 GATGGACCAGCTCTAATTGTATTTTCTGATGGACGTTATATTGGTGCAATACTTGATCGT 600
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 AATGGTCTTCGCCCAGCTCGTTTTTATGCAACCAGTGATGATATGGTGTATATGTCAAGT 660
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 GAAGTTGGCGTAGTCGATATACAACCTGATGTGAAAATCATACAAAAAGGTCGCCTAAAA 720
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 GCTGGACGTCTATTGATTGTTGATACAGAAAGTGGACAGCTGTTAGATGATGAATCGCTA 780
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 AAATCCAAATTGCTACCAACACCCCTATGATGTTTGGCTTAAAGAAGGAGCTATTGATTT 840
consensus_8559#1 ------------------------------TGTTTGGCTTAAAGAAGGAGCTATTGATTT 30
******************************
consensus_8559#0 GCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACT-ATAAGAGAATTACAACGC 899
consensus_8559#1 GCCCGAAATGCATAGGGCTTTTGCGAATTCCCCTGAACACTTATAAGAGAATTACAACGC 90
***************************************** ******************
consensus_8559#0 TCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATA 959
consensus_8559#1 TCGAGCCCTCAATCATTGATGATCGTCGCCTTCCACTATTTGGGTATAATCCAGAAAATA 150
************************************************************
consensus_8559#0 TCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCA------------------------ 995
consensus_8559#1 TCAATCTTCTAATTTTGCCCATGTTGAAAACTAGCATATAAACATGGTTACTCTGTTTCA 210
************************************
consensus_8559#0 ---AAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAA 1052
consensus_8559#1 GCAAAGAAGCTCTAGGATCTATGGGGAATGATGCTCCACTGGCTTGTTTATCTGAACAAA 270
*********************************************************
consensus_8559#0 ATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACAAA-TCCTCCTATC 1111
consensus_8559#1 ATCCCCATGTATTTGACTATTTTCAGCAGTTATTTGCTCAGGTCACANAATCCTCCTATC 330
*********************************************** * **********
consensus_8559#0 GATCCATTTCGTGAACGCATTGTAATGACATT---------------------------- 1143
consensus_8559#1 GATCCATTTCGTGAACGCATTGTAATGACATTGATGTGTCCTATCGGACCACAGAAAAAT 390
********************************
consensus_8559#0 ------
consensus_8559#1 ATTCTG 396
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||