|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1207 fasta sequence
[CTCGAGGCCAAAAATTCGGCACGAGGCGAGCATCGTTTATAGCCCTTTTGGTCCACTCAGAACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCACGAACTGCAGTACTTAGTCAGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGTTGATATCTAGAATGAAGTCCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAGTGGCCGAAACAGACGCTCACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTTGGACATTTGGAACTTTCTGGAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACTTACGGAGATGCCAATACCGTATTCCCTCAATTAAACGAACTACTGGACTCCTTTGAGGAAAATCTATGGAAACCTGTCCTTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGATAGGAATGAACCTCGACCAAACGATGATTTCCATAATAAACCACGAAGGCCCTTTGTGGACGATTTCATTAGAGCAGGGGCAACAGTTGGGCCACCGCCA-CCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTCGAACTGATAATGACTTTTTTCTCGGTGGTCCTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTCGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATGCCTCCTGGATTCGATAACTTCTATATGTAGGCTTTTCACAATACCACTTTTCAATGAACTGAGTTTTTTTTCTATTCAATTCAATTACTTATAAGATTCTTTTATTTTTCCTATTACGTAACACTTCGTTTTACAGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAAATTGTTTTTTTTTGTAAAGTACTATAAATAGTTATGAGTTAATAGACATAACTCATACCTGCATATAGGTTCAAAATGGTTTTTATGTGTCCATGATGAAATTTGAAAACTAGCTATTTATCAGTATAGTGTTTATTTAATAAAATTGATTAAATAAAGTAAAACAATCCTAAAAGTAAAAAAAAAAGGAGTNTG]
[+] EMBL CD079533 [CTCGAGGCCAAAAATTCGGCACGAGGCGAGCATCGTTTATAGCCCTTTTGGTCCACTCAGAACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCACGAACTGCAGTACTTAGTCAGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGTTGATATCTAGAATGAAGTCCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAGTGGCCGAAACAGACGCTCACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTTGGACATTTGGAACTTTCTGGAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACTTACGGAGATGCCAATACCGTATTCCCTCAATTAAACGAACTACTGGACTCCTTTGAGGAAAATCTATGGAAACCTGTCCTTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGATAGGAATGAACCTCGACCAAACGATGATTTCCATAATAAACCACGAAGGCCCTTTGTGGACGATTTCATTAGAGCAGGGGCAACAGTTGGGCCACCGCCA CCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTCGAACTGATAATGACTNTNTTCTCGGTGGTCCTGATGTTC ]
[+] EMBL CD137008 [ ctcttcatACTGAAACTGATAGGAATGAACCTCGACCAAACGATGATTTCCATAATAAACCACGAAGGCCCTTTGTGGACGATTTCATTAGAGCAGGGGCAACAGTTGGGCCACCGCCA CCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTCGAACTGATAATGACTTTTTTCTCGGTGGTCCTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTCGATTTGATCCCTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATGCCTCCTGGATTCG ]
[-] EMBL CD181940 [ CCACGAAGGCCCTTTGTGGGCGATTTCATTAGAGCAGGGGCAACAGTTGGGCCCCCGCCA CCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGA ]
[-] EMBL CD073798 [ TTTCATTAGAGCAGGGGCAACAGTTGGGCCACCGCCANCCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTCGAACTGATAATGACTTTTTTCTCGGTGGTCCTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTCGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATGCCTCCTGGATTCGATAACTTCTATATGTAGGCTTTTCACAATACCACTTTTCAATGAACTGAGTTTTTTTTCTATTCAATTCAATTACTTATAAGATTCTTTTATTTTTCCTATTACGTAACACTTCGTTTTACAGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAAATTGTTTTTTTTTGTAAAGTACTATAAATAGTTATGAGTTAATAGACATAACTCATACCTGCATATAGGTTCAAAATGGTTTTTATGTGTCCATGATGAAATTTGAAAACTAGCTATTTATCAGTATAGTGTTTATTTAATAAAATTGATTAAATAAAGTAAAACAATCCTAAAAGTAAAAAAAAAAGGAGTNTG]
[-] EMBL CD073453 [ AGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTCGAACTGATAATGACTTTTTTCTCGGTGGTCCTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTCGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATGCCTCCTGGATTCGATAACTTCTATATGTAGGCTTTTCACAATACCACTTTTCAATGAACTGAGTTTTTTTTCTATTCAATTCAATTACTTATAAGATTCTTTTATTTTTCCTATTACGTAACACTTCGTTTTACAGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAAATTGTTTTTTTTTGTAAAGTACTATAAATAGTTATGAGTTAATAGACATAACTCATACCTGCATATAGGTTCAAAATGGTTTTTATGTGTCCATGATGAAATTTGAAAACTAGCTATTTATCAGTATAGTGTTTATTTAATATTATTGATTAAATAAAGTAA ]
consensusID : consensus_8560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[TCTGAAGATTCATCAAGCGGGGCTCATCTCACTTCACCTATGCCTGGTGCAAGTAATAAAAGAGGCCCCGTAGAAACAAGCATCCTTGACTACGTTTTATCATTTCATGGGTCAAATTGCAAGAATCGAGCATCGTTTATAGCCCTTTTGGTCCACTCAGAACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCACGAACTGCAGTACTTAGTCAGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGTTGATATCTAGAATGAAGTCCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAGTGGCCGAAACAGACGCTCACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTTGGACATTTGGAACTTTCTGGAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACTTACGGAGATGCCAATACCGTATTCCCTCAATTAAACGAACTACTGGACTCCTTTGAGGAAAATCTATGGAAACCTGTCCTTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGATAGGAATGAACCTCGACCAAACGATGATTTCCATANTA]
[+] EMBL CD079002 [TCTGAAGATTCATCAAGCGGGGCTCATCTCACTTCACCTATGCCTGGTGCAAGTAATAAAAGAGGCCCCGTAGAAACAAGCATCCTTGACTACGTTTTATCATTTCATGGGTCAAATTGCAAGAATCGAGCATCGTTTATAGCCCTTTTGGTCCACTCAGAACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCACGAACTGCAGTACTTAGTCAGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGTTGATATCTAGAATGAAGTCCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAGTGGCCGAAACAGACGCTCACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTTGGACATTTGGAACTTTCTGGAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACTTACGGAGATGCCAATACCGTATTCCCTCAATTAAACGAACTACTGGACTCCTTTGAGGAAAATCTATGGAAACCTGTCCTTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGATAGGAATGAACCTCGACCAAACGATGATTTCCATANTA]
consensusID : consensus_8560#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence
[CTTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTAGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATACCTCCTGGATTCGATAACTTCTATATGTAGGCTTTTCACAATACCACTTTTCAATGAACTGAGTTTTTTTTCTAGTTAATTCAATTACTTGTAAGATTCTTTTATTTTTCCTATTACGTAACACTTCGTTTTACAGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395358 [CTTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTAGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATACCTCCTGGATTCGATAACTTCTATATGTAGGCTTTTCACAATACCACTTTTCAATGAACTGAGTTTTTTTTCTAGTTAATTCAATTACTTGTAAGATTCTTTTATTTTTCCTATTACGTAACACTTCGTTTTACAGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8560#0 CTCGAGGCCAAAAATTCGGCACGAGGCGAGCATCGTTTATAGCCCTTTTGGTCCACTCAG 60
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 AACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCACGAACTGCAGTACTTAGTC 120
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 AGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGTTGATATCTAGAATGAAGT 180
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 CCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAGTGGCCGAAACAGACGCTC 240
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 ACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTTGGACATTTGGAACTTTCTG 300
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 GAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACTTACGGAGATGCCAATACCG 360
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 TATTCCCTCAATTAAACGAACTACTGGACTCCTTTGAGGAAAATCTATGGAAACCTGTCC 420
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 TTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGATAGGAATGAACCTCGACCAAACG 480
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 --------------------------------------TCTGAAGATTCATCAAGCGGGG 22
consensus_8560#0 ATGATTTCCATAATAAACCACGAAGGCCCTTTGTGGACGATTTCATTAGAGCAGGGGCAA 540
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 CTCATCTCACTTCACCTATGCCTGGTGCAAGTAATAAAAGAGGCCCCGTAGAAACAAGCA 82
consensus_8560#0 CAGTTGGGCCACCGCCACCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTG 600
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 TCCTTGACTACGTTTTATCATTTCATGGGTCAAATTGCAAGAATCGAGCATCGTTTATAG 142
consensus_8560#0 GAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTC 660
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 CCCTTTTGGTCCACTCAGAACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCAC 202
consensus_8560#0 GAACTGATAATGACTTTTTTCTCGGTGGTCCTGATGTTCTTCCTCCTGGGGCAGTTCCTC 720
consensus_8560#2 -----------------------------CTTGATGTTCTTCCTCCTGGGGCAGTTCCTC 31
consensus_8560#1 GAACTGCAGTACTTAGTCAGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGT 262
*** * ** * ** * ** *
consensus_8560#0 CGGGGGCTCGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAG 780
consensus_8560#2 CGGGGGCTAGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAG 91
consensus_8560#1 TGATATCTAGAATGAAGTCCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAG 322
* ** ** * * * * * * * * * * ** *** ****
consensus_8560#0 GTGGTCGTCGCC-ATATTCCAGATCCTGATCATGCCATGCCTCCTGGATTCGATAACTTC 839
consensus_8560#2 GTGGTCGTCGCC-ATATTCCAGATCCTGATCATGCCATACCTCCTGGATTCGATAACTTC 150
consensus_8560#1 -TGGCCGAAACAGACGCTCACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTT 381
*** ** * * ** * ** * *** * * ****** **
consensus_8560#0 T-ATATGTAGG-CTTTTCACAAT--ACCACTTTTCAATGAACTGAGTTTTTTTTCTATTC 895
consensus_8560#2 T-ATATGTAGG-CTTTTCACAAT--ACCACTTTTCAATGAACTGAGTTTTTTTTCTAGTT 206
consensus_8560#1 GGACATTTGGAACTTTCTGGAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACT 441
* ** * * **** *** * ** *** * * * ** * * *
consensus_8560#0 AATTCAATTACTTATA--AGATTCTTTTATTTTTCCTA-TTACGTAACACTTCGTTTTAC 952
consensus_8560#2 AATTCAATTACTTGTA--AGATTCTTTTATTTTTCCTA-TTACGTAACACTTCGTTTTAC 263
consensus_8560#1 TACGGAGATGCCAATACCGTATTCCCTCAATTAAACGAACTACTGGAC---TCCTTTGAG 498
* * * * ** **** * * ** * * *** ** ** *** *
consensus_8560#0 AGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAA 1012
consensus_8560#2 AGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAA 323
consensus_8560#1 GAAAATCTATGGAAACCTGTCCTTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGAT 558
* * * * * * * *** ** * *** * ***** * *
consensus_8560#0 ATTGTTTTTTTTTGTAAAGTACTATAAATAGTTATGAGTTAATAGACATAACTCATACCT 1072
consensus_8560#2 A------------AAAAAAAAAAAAAAA-------------------------------- 339
consensus_8560#1 AGGAATGAACCTCGACCAAACGATGATTTCCATANTA----------------------- 595
* * *
consensus_8560#0 GCATATAGGTTCAAAATGGTTTTTATGTGTCCATGATGAAATTTGAAAACTAGCTATTTA 1132
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 TCAGTATAGTGTTTATTTAATAAAATTGATTAAATAAAGTAAAACAATCCTAAAAGTAAA 1192
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 AAAAAAAGGAGTNTG 1207
consensus_8560#2 ---------------
consensus_8560#1 ---------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||