These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1207 fasta sequence [CTCGAGGCCAAAAATTCGGCACGAGGCGAGCATCGTTTATAGCCCTTTTGGTCCACTCAGAACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCACGAACTGCAGTACTTAGTCAGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGTTGATATCTAGAATGAAGTCCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAGTGGCCGAAACAGACGCTCACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTTGGACATTTGGAACTTTCTGGAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACTTACGGAGATGCCAATACCGTATTCCCTCAATTAAACGAACTACTGGACTCCTTTGAGGAAAATCTATGGAAACCTGTCCTTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGATAGGAATGAACCTCGACCAAACGATGATTTCCATAATAAACCACGAAGGCCCTTTGTGGACGATTTCATTAGAGCAGGGGCAACAGTTGGGCCACCGCCA-CCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTCGAACTGATAATGACTTTTTTCTCGGTGGTCCTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTCGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATGCCTCCTGGATTCGATAACTTCTATATGTAGGCTTTTCACAATACCACTTTTCAATGAACTGAGTTTTTTTTCTATTCAATTCAATTACTTATAAGATTCTTTTATTTTTCCTATTACGTAACACTTCGTTTTACAGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAAATTGTTTTTTTTTGTAAAGTACTATAAATAGTTATGAGTTAATAGACATAACTCATACCTGCATATAGGTTCAAAATGGTTTTTATGTGTCCATGATGAAATTTGAAAACTAGCTATTTATCAGTATAGTGTTTATTTAATAAAATTGATTAAATAAAGTAAAACAATCCTAAAAGTAAAAAAAAAAGGAGTNTG] [+] EMBL CD079533 [CTCGAGGCCAAAAATTCGGCACGAGGCGAGCATCGTTTATAGCCCTTTTGGTCCACTCAGAACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCACGAACTGCAGTACTTAGTCAGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGTTGATATCTAGAATGAAGTCCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAGTGGCCGAAACAGACGCTCACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTTGGACATTTGGAACTTTCTGGAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACTTACGGAGATGCCAATACCGTATTCCCTCAATTAAACGAACTACTGGACTCCTTTGAGGAAAATCTATGGAAACCTGTCCTTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGATAGGAATGAACCTCGACCAAACGATGATTTCCATAATAAACCACGAAGGCCCTTTGTGGACGATTTCATTAGAGCAGGGGCAACAGTTGGGCCACCGCCA CCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTCGAACTGATAATGACTNTNTTCTCGGTGGTCCTGATGTTC ] [+] EMBL CD137008 [ ctcttcatACTGAAACTGATAGGAATGAACCTCGACCAAACGATGATTTCCATAATAAACCACGAAGGCCCTTTGTGGACGATTTCATTAGAGCAGGGGCAACAGTTGGGCCACCGCCA CCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTCGAACTGATAATGACTTTTTTCTCGGTGGTCCTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTCGATTTGATCCCTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATGCCTCCTGGATTCG ] [-] EMBL CD181940 [ CCACGAAGGCCCTTTGTGGGCGATTTCATTAGAGCAGGGGCAACAGTTGGGCCCCCGCCA CCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGA ] [-] EMBL CD073798 [ TTTCATTAGAGCAGGGGCAACAGTTGGGCCACCGCCANCCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTCGAACTGATAATGACTTTTTTCTCGGTGGTCCTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTCGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATGCCTCCTGGATTCGATAACTTCTATATGTAGGCTTTTCACAATACCACTTTTCAATGAACTGAGTTTTTTTTCTATTCAATTCAATTACTTATAAGATTCTTTTATTTTTCCTATTACGTAACACTTCGTTTTACAGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAAATTGTTTTTTTTTGTAAAGTACTATAAATAGTTATGAGTTAATAGACATAACTCATACCTGCATATAGGTTCAAAATGGTTTTTATGTGTCCATGATGAAATTTGAAAACTAGCTATTTATCAGTATAGTGTTTATTTAATAAAATTGATTAAATAAAGTAAAACAATCCTAAAAGTAAAAAAAAAAGGAGTNTG] [-] EMBL CD073453 [ AGCGAGTATTGGAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTCGAACTGATAATGACTTTTTTCTCGGTGGTCCTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTCGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATGCCTCCTGGATTCGATAACTTCTATATGTAGGCTTTTCACAATACCACTTTTCAATGAACTGAGTTTTTTTTCTATTCAATTCAATTACTTATAAGATTCTTTTATTTTTCCTATTACGTAACACTTCGTTTTACAGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAAATTGTTTTTTTTTGTAAAGTACTATAAATAGTTATGAGTTAATAGACATAACTCATACCTGCATATAGGTTCAAAATGGTTTTTATGTGTCCATGATGAAATTTGAAAACTAGCTATTTATCAGTATAGTGTTTATTTAATATTATTGATTAAATAAAGTAA ] consensusID : consensus_8560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [TCTGAAGATTCATCAAGCGGGGCTCATCTCACTTCACCTATGCCTGGTGCAAGTAATAAAAGAGGCCCCGTAGAAACAAGCATCCTTGACTACGTTTTATCATTTCATGGGTCAAATTGCAAGAATCGAGCATCGTTTATAGCCCTTTTGGTCCACTCAGAACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCACGAACTGCAGTACTTAGTCAGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGTTGATATCTAGAATGAAGTCCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAGTGGCCGAAACAGACGCTCACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTTGGACATTTGGAACTTTCTGGAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACTTACGGAGATGCCAATACCGTATTCCCTCAATTAAACGAACTACTGGACTCCTTTGAGGAAAATCTATGGAAACCTGTCCTTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGATAGGAATGAACCTCGACCAAACGATGATTTCCATANTA] [+] EMBL CD079002 [TCTGAAGATTCATCAAGCGGGGCTCATCTCACTTCACCTATGCCTGGTGCAAGTAATAAAAGAGGCCCCGTAGAAACAAGCATCCTTGACTACGTTTTATCATTTCATGGGTCAAATTGCAAGAATCGAGCATCGTTTATAGCCCTTTTGGTCCACTCAGAACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCACGAACTGCAGTACTTAGTCAGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGTTGATATCTAGAATGAAGTCCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAGTGGCCGAAACAGACGCTCACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTTGGACATTTGGAACTTTCTGGAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACTTACGGAGATGCCAATACCGTATTCCCTCAATTAAACGAACTACTGGACTCCTTTGAGGAAAATCTATGGAAACCTGTCCTTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGATAGGAATGAACCTCGACCAAACGATGATTTCCATANTA] consensusID : consensus_8560#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [CTTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTAGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATACCTCCTGGATTCGATAACTTCTATATGTAGGCTTTTCACAATACCACTTTTCAATGAACTGAGTTTTTTTTCTAGTTAATTCAATTACTTGTAAGATTCTTTTATTTTTCCTATTACGTAACACTTCGTTTTACAGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAAAAAAAAAAAAAAAAAA] [-] EMBL AI395358 [CTTGATGTTCTTCCTCCTGGGGCAGTTCCTCCGGGGGCTAGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAGGTGGTCGTCGCCATATTCCAGATCCTGATCATGCCATACCTCCTGGATTCGATAACTTCTATATGTAGGCTTTTCACAATACCACTTTTCAATGAACTGAGTTTTTTTTCTAGTTAATTCAATTACTTGTAAGATTCTTTTATTTTTCCTATTACGTAACACTTCGTTTTACAGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8560#0 CTCGAGGCCAAAAATTCGGCACGAGGCGAGCATCGTTTATAGCCCTTTTGGTCCACTCAG 60 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 AACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCACGAACTGCAGTACTTAGTC 120 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 AGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGTTGATATCTAGAATGAAGT 180 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 CCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAGTGGCCGAAACAGACGCTC 240 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 ACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTTGGACATTTGGAACTTTCTG 300 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 GAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACTTACGGAGATGCCAATACCG 360 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 TATTCCCTCAATTAAACGAACTACTGGACTCCTTTGAGGAAAATCTATGGAAACCTGTCC 420 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 TTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGATAGGAATGAACCTCGACCAAACG 480 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 --------------------------------------TCTGAAGATTCATCAAGCGGGG 22 consensus_8560#0 ATGATTTCCATAATAAACCACGAAGGCCCTTTGTGGACGATTTCATTAGAGCAGGGGCAA 540 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 CTCATCTCACTTCACCTATGCCTGGTGCAAGTAATAAAAGAGGCCCCGTAGAAACAAGCA 82 consensus_8560#0 CAGTTGGGCCACCGCCACCAGATTATGGGCGAAGTGACCTTGATCCTCTAGCGAGTATTG 600 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 TCCTTGACTACGTTTTATCATTTCATGGGTCAAATTGCAAGAATCGAGCATCGTTTATAG 142 consensus_8560#0 GAGGACCATCAAGAGGTGGTGGGATGATTTTAGATCCAAGGCGCATCATACCTGGCAGTC 660 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 CCCTTTTGGTCCACTCAGAACTTTTATCGCGCGGAGCAAGACCCACAGAAGCTACCGCAC 202 consensus_8560#0 GAACTGATAATGACTTTTTTCTCGGTGGTCCTGATGTTCTTCCTCCTGGGGCAGTTCCTC 720 consensus_8560#2 -----------------------------CTTGATGTTCTTCCTCCTGGGGCAGTTCCTC 31 consensus_8560#1 GAACTGCAGTACTTAGTCAGTCCTGTCTTTTTGAAGATCCTATTCGAATGTCATACACGT 262 *** * ** * ** * ** * consensus_8560#0 CGGGGGCTCGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAG 780 consensus_8560#2 CGGGGGCTAGATTTGATCCTTTCGGACCTGGTATAGGACCTCTCAGACCGCATCCTTCAG 91 consensus_8560#1 TGATATCTAGAATGAAGTCCGACACATCATCAACACCATGCAGCCAACTGCAAGTCTCAG 322 * ** ** * * * * * * * * * * ** *** **** consensus_8560#0 GTGGTCGTCGCC-ATATTCCAGATCCTGATCATGCCATGCCTCCTGGATTCGATAACTTC 839 consensus_8560#2 GTGGTCGTCGCC-ATATTCCAGATCCTGATCATGCCATACCTCCTGGATTCGATAACTTC 150 consensus_8560#1 -TGGCCGAAACAGACGCTCACATTTTTGTTAATGTGACAGACACAACTACCGATAAATTT 381 *** ** * * ** * ** * *** * * ****** ** consensus_8560#0 T-ATATGTAGG-CTTTTCACAAT--ACCACTTTTCAATGAACTGAGTTTTTTTTCTATTC 895 consensus_8560#2 T-ATATGTAGG-CTTTTCACAAT--ACCACTTTTCAATGAACTGAGTTTTTTTTCTAGTT 206 consensus_8560#1 GGACATTTGGAACTTTCTGGAATCGAACATGTTTGTCTTGATAGCGTCAATAATTTGACT 441 * ** * * **** *** * ** *** * * * ** * * * consensus_8560#0 AATTCAATTACTTATA--AGATTCTTTTATTTTTCCTA-TTACGTAACACTTCGTTTTAC 952 consensus_8560#2 AATTCAATTACTTGTA--AGATTCTTTTATTTTTCCTA-TTACGTAACACTTCGTTTTAC 263 consensus_8560#1 TACGGAGATGCCAATACCGTATTCCCTCAATTAAACGAACTACTGGAC---TCCTTTGAG 498 * * * * ** **** * * ** * * *** ** ** *** * consensus_8560#0 AGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAA 1012 consensus_8560#2 AGTTACCACTATATATGTTGCTTTCTTTCTATATCATTTCAAAAGCTCACTGAGTATCAA 323 consensus_8560#1 GAAAATCTATGGAAACCTGTCCTTCCATCACCCGCTTTTTGCCGTCCAACTGAAACTGAT 558 * * * * * * * *** ** * *** * ***** * * consensus_8560#0 ATTGTTTTTTTTTGTAAAGTACTATAAATAGTTATGAGTTAATAGACATAACTCATACCT 1072 consensus_8560#2 A------------AAAAAAAAAAAAAAA-------------------------------- 339 consensus_8560#1 AGGAATGAACCTCGACCAAACGATGATTTCCATANTA----------------------- 595 * * * consensus_8560#0 GCATATAGGTTCAAAATGGTTTTTATGTGTCCATGATGAAATTTGAAAACTAGCTATTTA 1132 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 TCAGTATAGTGTTTATTTAATAAAATTGATTAAATAAAGTAAAACAATCCTAAAAGTAAA 1192 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 AAAAAAAGGAGTNTG 1207 consensus_8560#2 --------------- consensus_8560#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||