cluster # 8561

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Schistosoma mansoni
cluster # 8561 cluster # 8561 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8561#0 length = 739 sequences # 6

consensus_8561#1 length = 484 sequences # 1

consensusID : consensus_8561#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 739
fasta sequence

                              [TAAGTGTATAAAGCGATGGCGTTTGAAGTAAACGATACTGGGCGCGAGTTTCGTCCCATAGTGAACAT-CAACTCTGAGATGCAGGAACATCCAGCTGACGAGTCTTAAAAAGGGCGAAACTCCTGCATTCTACTACCAGCCACTATTTATCTTCGCCCAATTTTACTAACATCTCCAAGTAGACACAACATCAAATTTTTCTTTTATTATAAATGTAACATAAACTATTTTGTTTTAATTAAGTTTTCTACTGTCAGTTTATATTCAATTTGAATAATGAAAAAAAGGAATGAAGTATGGACATAAAAATGATTTTTAAAAAAATTATGTAAATCATCATGGTGTAAAGAGAAATAAAAACTGAAATAACTAAAATAAAGTGAAATACAAT-GAATGAAGTTTCAATATT-GAATTTGTATTGAAACTGATGGACTTGTAAGATTTTAATGGTTCAATTCATGGGTCGATCTAAGTTAGAGTACCGTCGGAAACCTGGAAGTATTGGATGGCCGTTTCGTCCTAGTATGGGACTCCTCGACAGTGTGCATCCATGATCTCGTATGTGGGAATCGAACCCAACACTTTTGGTCTTGTACGCTAACACTTAACTTCTAGACCACTGAGTCAGTATCCAATGATGGCATTGTCTAACTTCAATTGATCCATGATCTTGCATAACCATTAATCTATTGTCTGAAGCAGATACCTGTCTCTATCTGACACGGATTGGACTCCAATG]

[+] EMBL CD085754             [TAAGTGTATACAGCGATGGCGTTTGAAGTAAACGATACTGGGCGCGAGTTTCGTCCCATAGTGAACAT CAACTCTGAGATGCAGGAACATCCAGCTGACGAGTCTTAAAAAGGGCGAAACTCCTGCATTCTACTACCAGCCACTATTTATCTTCGCCCAATTTTACTAACATCTCCAAGTAGACACAACATCAAATTTTTCTTTTATTATAAATGTAACATAAACTATTTTGTTTTAATTAAGTTTTCTACTGTCAGTTTATATTCAATTTGAATAATGAAAAAAAGGAATGAAGTATGGACATAAAAATGATTTTTAAAAAAATTATGTAAATCATCATGGTGTAAAGAGAAATAAAAACTGAAATAACTAAAATAAAGTGAAATACAAT GAATGAAGTTTCAATATT GAATTTGTATTGAAACTGATGGACTTGTAAGATTTTAATGGTTCAATTCATGGGTCGATCTAAGTTAGAGTACCGTCGGAAACCTGGAAGTATTGGATGGCCGTTTCGTCCTAGTATGGGACTCCTCGACAGTGTGCATCCATGATC                                                                                                                                                                                       ]
[+] EMBL CD085753             [     GTATAAAGCGATGGCGTTTGAAGTAAACGATACTGGGCGCGAGTTTCGTCCCATAGTGAACAT CAACTCTGAGATGCAGGAACATCCAGCTGACGAGTCTTAAAAAGGGCGAAACTCCTGCATTCTACTACCAGCCACTATTTATCTTCGCCCAATTTTACTAACATCTCCAAGTAGACACAACATCAAATTTTTCTTTTATTATAAATGTAACATAAACTATTTTGTTTTAATTAAGTTTTCTACTGTCAGTTTATATTCAATTTGAATAATGAAAAAAAGGAATGAAGTATGGACATAAAAATGATTTTTAAAAAAATTATGTAAATCATCATGGTGTAAAGAGAAATAAAAACTGAAATAACTAAAATAAAGTGAAATACAAT GAATGAAGTTTCAATATT GAATTTGTATTGAAACTGATGGACTTGTAAGATTTTAATGGTTCAATTCATGGGTCGATCTAAGTTAGAGTACCGTCGGAAACCTGGAAGTATTGGATGGCCGTTTCGTCCTAGTATGGGACTCCTCGACAGTGTGCATCCATGATCTCGTATGTGGGAATCGAACCCAACACTTTTGGTCTTGTACGCTAACACTCAACTTCTAGACCACTGAGTCAGTATCCAATGATGGCATTGTCTAACTTCAATTGATCCATGATCTTGCATAACCATT                                                        ]
[+] EMBL CD085746             [     GTATAAAGCGATGGCGTTTGAAGTAAACGATACTGGGCGCGAGTTTCGTCCCATAGTGAACAT CAACTCTGAGATGCAGGAACATCCAGCTGACGAGTCTTAAAAAGGGCGAAACTCCTGCATTCTACTACCAGCCACTATTTATCTTCGCCCAATTTTACTAACATCTCCAAGTAGACACAACATCAAATTTTTCTTTTATTATAAATGTAACATAAACTATTTTGTTTTAATTAAGTTTTCTACTGTCAGTTTATATTCAATTTGAATAATGAAAAAAAGGAATGAAGTATGGACATAAAAATGATTTTTAAAAAAATTATGTAAATCATCATGGTGTAAAGAGAAATAAAAACTGAAATAACTAAAATAAAGTGAAATACAAT GAATGAAGTTTCAATATT GAATTTGTATTGAAACTGATGGACTTGTAAGATTTTAATGGTTCAATTCATGGGTCGATCTAAGTTAGAGTACCGTCGGAAACCTGGAAGTATTGGATGGCCGTTTCGTCCTAGTATGGGACTCCTCGACAGTGTGCATCCATGATCTCGTATGTGGGAATCGAACCCAACACTTTTGGTCTTGTACGCTAACACTTAACTTCTAGACCACTGAGTCAGTATCCAATGATGGCATTGTCTAAC                                                                                       ]
[+] EMBL CD085662             [     GTATAAAGCGATGGCGTTTGAAGTAAACGATACTGGGCGCGAGTTTCGTCCCATAGTGAACAT CAACTCTGAGATGCAGGAACATCCAGCTGACGAGTCTTAAAAAGGGCGAAACTCCTGCATTCTACTACCAGCCACTATTTATCTTCGCCCAATTTTACTAACATCTCCAAGTAGACACAACATCAAATTTTTCTTTTATTATAAATGTAACATAAACTATTTTGTTTTAATTAAGTTTTCTACTGTCAGTTTATATTCAATTTGAATAATGAAAAAAGGGAATGAAGTATGGACATAAAAATGATTTTTAAAAAAATTATGTAAATCATCATGGTGTAAAGAGAAATAAAAACTGAAATAACTAAAATAAAGTGAAATACAAT GAATGAAGTTTCAATATT GAATTTGTATTGAAACTGATGGACTTGTAAGATTTTAATG                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD085666             [                                          CGCCAGTTTCGCCCCATAGTGAACATCCAACTCTGAGATGCAGGAACATCCAGCTGACGAGTCTTAAAAAGGGCGAAACTCCTGCATTCTACTACCAGCCACTATTTATCTTCGCCCAATTTTACTAACATCTCCAAGTAAACACAACATCAAATTTTTCTTTTATTATAAATGTAACATAAACTATTTTGTTTTAATTAAGTTTTCTACTGTCAGTTTATATTCAATTTGAATAATGAAAAAAGGGAATGAAGTATGGACATAAAAATGATTTTTAAAAAAATTATGTAAATCATCATGGTGTAAAGAGAAATAAAAACTGAAATAACTAAAATAAAGTGAAATACAATGGAATGAAGTTTCAATATTCGAATTT                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD085724             [                                                                                                     AGTCTTAAAAAGGGCGAAACTCCTGCATTCTACTACCAGCCACTA TTATCTTCGCCCAATTTTACTAACATCTCCAAGTAGGCACAACATCAAATTTTTCCTTTATTATAAATGTAACATAAACTATTTTGTTTTAATTAAGTTTTCTACTGTCAGTTTATATTCAATTTGAATAATGAAAAAAAGGAATGAAGTATGGACATAAAAATGATTTTTAAAAAAATTATGTAAATCATCATGGTGTAAAGAGAAATAAAAACTGAAATAACTAAAATAAAGTGAAATACAAT GAATGAAGTTTCAATATT GAATTTGTATTGAAACTGATGGACTTGTAAGATTTTAATGGTTCAATTCATGGGTCGATCTAAGTTAGAGTACCGTCGGAAACCTGGAAGTATTGGATGGCCGTTTCGTCCTAGTATGGGACTCCTCGACAGTGTGCATCCATGATCTCGTATGTGGGAATCGAACCCAACACTTTTGGTCTTGTACGCTAACACTTAACTTCTAGACCACTGAGTCAGTATCCAATGATGGCATTGTCTAACTTCAATTGATCCATGATCTTGCATAACCATTAATCTATTGTCTGAAGCAGATACCTGTCTCTATCTGACACGGATTGGACTCCAATG]




>consensus_8561#0
TAAGTGTATAAAGCGATGGCGTTTGAAGTAAACGATACTGGGCGCGAGTTTCGTCCCATA
GTGAACATCAACTCTGAGATGCAGGAACATCCAGCTGACGAGTCTTAAAAAGGGCGAAAC
TCCTGCATTCTACTACCAGCCACTATTTATCTTCGCCCAATTTTACTAACATCTCCAAGT
AGACACAACATCAAATTTTTCTTTTATTATAAATGTAACATAAACTATTTTGTTTTAATT
AAGTTTTCTACTGTCAGTTTATATTCAATTTGAATAATGAAAAAAAGGAATGAAGTATGG
ACATAAAAATGATTTTTAAAAAAATTATGTAAATCATCATGGTGTAAAGAGAAATAAAAA
CTGAAATAACTAAAATAAAGTGAAATACAATGAATGAAGTTTCAATATTGAATTTGTATT
GAAACTGATGGACTTGTAAGATTTTAATGGTTCAATTCATGGGTCGATCTAAGTTAGAGT
ACCGTCGGAAACCTGGAAGTATTGGATGGCCGTTTCGTCCTAGTATGGGACTCCTCGACA
GTGTGCATCCATGATCTCGTATGTGGGAATCGAACCCAACACTTTTGGTCTTGTACGCTA
ACACTTAACTTCTAGACCACTGAGTCAGTATCCAATGATGGCATTGTCTAACTTCAATTG
ATCCATGATCTTGCATAACCATTAATCTATTGTCTGAAGCAGATACCTGTCTCTATCTGA
CACGGATTGGACTCCAATG

consensusID : consensus_8561#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [CGAGGCCAANAATGCGGCACGAGGCGGCAGCGTAAACTATTTCATCATTTTGTGGCTTGCTTGAATCTTCTATCTAATTATACCGGCATATTCTTGCTGGTTTGTATACATAAAATCCCTTATCAGTTTTATTATGCTCAACTCGGCTGTGTTCTTTCACCCATTTTGTAGTATTGTGTAGGTTACCGTTAGTGTATCACTACTTTTGTGTGTGACATTTTGCAGGTTCATTGTTTTGTCGCGGCCTTTTTTAGGCGATGCGAAGGGCAAGTATTAAACTGTGCTCCATTATTAGTTTCCTGATTATTGTCATAAATGTCATAAGCTATATTTACTTTGTATGCTTTGCATATTGGGTTCTATTCGTTTTCCTACCATTTCTCAAAGCTGTATTGTCTTGTAATTTTCTCCTGTCCTATTTAGCTATAACGTATTTGGTTTCAGTCTGCTTATTGCACAAATATATTTTAATGAGCTTTGTTCT]

[+] EMBL CD081339             [CGAGGCCAANAATGCGGCACGAGGCGGCAGCGTAAACTATTTCATCATTTTGTGGCTTGCTTGAATCTTCTATCTAATTATACCGGCATATTCTTGCTGGTTTGTATACATAAAATCCCTTATCAGTTTTATTATGCTCAACTCGGCTGTGTTCTTTCACCCATTTTGTAGTATTGTGTAGGTTACCGTTAGTGTATCACTACTTTTGTGTGTGACATTTTGCAGGTTCATTGTTTTGTCGCGGCCTTTTTTAGGCGATGCGAAGGGCAAGTATTAAACTGTGCTCCATTATTAGTTTCCTGATTATTGTCATAAATGTCATAAGCTATATTTACTTTGTATGCTTTGCATATTGGGTTCTATTCGTTTTCCTACCATTTCTCAAAGCTGTATTGTCTTGTAATTTTCTCCTGTCCTATTTAGCTATAACGTATTTGGTTTCAGTCTGCTTATTGCACAAATATATTTTAATGAGCTTTGTTCT]




>consensus_8561#1
CGAGGCCAANAATGCGGCACGAGGCGGCAGCGTAAACTATTTCATCATTTTGTGGCTTGC
TTGAATCTTCTATCTAATTATACCGGCATATTCTTGCTGGTTTGTATACATAAAATCCCT
TATCAGTTTTATTATGCTCAACTCGGCTGTGTTCTTTCACCCATTTTGTAGTATTGTGTA
GGTTACCGTTAGTGTATCACTACTTTTGTGTGTGACATTTTGCAGGTTCATTGTTTTGTC
GCGGCCTTTTTTAGGCGATGCGAAGGGCAAGTATTAAACTGTGCTCCATTATTAGTTTCC
TGATTATTGTCATAAATGTCATAAGCTATATTTACTTTGTATGCTTTGCATATTGGGTTC
TATTCGTTTTCCTACCATTTCTCAAAGCTGTATTGTCTTGTAATTTTCTCCTGTCCTATT
TAGCTATAACGTATTTGGTTTCAGTCTGCTTATTGCACAAATATATTTTAATGAGCTTTG
TTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8561#0      TAAGTGTATAAAGCGATGGCGTTTGAAGTAAACGATACTGGGCGCGAGTTTCGTCCCATA 60
consensus_8561#1      ------------------------------------------------------------
                                                                                  

consensus_8561#0      GTGAACATCAACTCTGAGATGCAGGAACATCCAGCTGACGAGTCTTAAAAAGGGCGAAAC 120
consensus_8561#1      --------------------------------------CGAGGCCAANAATGCGGCACGA 22
                                                            **** *  * ** * *  *   

consensus_8561#0      TCCTGCATTCTACTACCAGCCACTATTTATCTTCGCCCAATTTTACTAACATCTCCAAGT 180
consensus_8561#1      GGCGGCAGCGTA-----AACTATT--TCATCATTTTGTGGCTTGCTTGAATCTTCTATCT 75
                        * ***   **     * * * *  * *** *        **   * *    ** *  *

consensus_8561#0      AGACACAACATCAAATTTTTCTTTTATTATAAATGTAACATAAACTATTTTGTTTTAATT 240
consensus_8561#1      AATTATACCGGCATATTCTTGCTGGTTTGTATACATAAAATC--CCTTATCAGTTTTATT 133
                      *   * * *  ** *** **  *   ** ** *  *** **   *  * *   *** ***

consensus_8561#0      AAGTTT---TCTACTGTCAGTTTATATTCAATTTGAATAATGAAAAAAAGGAATGAAGTA 297
consensus_8561#1      ATGCTCAACTCGGCTGTGTTCTTTCACCCATTTTGTAGTATTGTGTA---GGTTACCGTT 190
                      * * *    **  ****    **  *  ** **** *  **     *   *  *   ** 

consensus_8561#0      TGGACATAAAAATGATTTTTAAAAAAATTATGTAAAT-CATCATGGTGTAAAGAGAAATA 356
consensus_8561#1      AGTGTATCACTACTTTTGTGTGTGACATTTTGCAGGTTCATTGTTTTGTCGCGGCCTTTT 250
                       *   ** *  *   ** *     * *** ** *  * ***  *  ***   *     * 

consensus_8561#0      AAAACTGAAATAACTAAAATAAAGTGAAATACAATGAATGA--AGTTTCAATATTGAATT 414
consensus_8561#1      TTAGGCGATGCGAAGGGCAAGTATTAAACTGTGCTCCATTATTAGTTTCCTGATTA---T 307
                        *   **    *     *   * * ** *    *  ** *  ******   ***    *

consensus_8561#0      TGTATTGAAACTGATGGACT-TGTAAGATTTTAATGGTTCAATTCATGGGT-CGATCTAA 472
consensus_8561#1      TGTCATAAATGTCATAAGCTATATTTACTTTGTATGCTTTGCATATTGGGTTCTATTCGT 367
                      ***  * **  * **   ** * *    ***  *** **    *  ***** * **    

consensus_8561#0      GTTAGAGTACCGTCGGAAACCTGGAAGTATTGGATGGCCGTTTCGTCCTAG--TATGGGA 530
consensus_8561#1      TTTCCTACCATTTCTCAAAGCTG----TATTGTCTTGTAATTTTCTCCTGTCCTATTTAG 423
                       **         **  *** ***    *****  * *   ***  ****    ***    

consensus_8561#0      CTCCTCGACAGTGTGCATCCATGATCTCGTATGTGGGAATCGAACCCAACACTTTTGGTC 590
consensus_8561#1      CTATAACGTATTTGGTTTCAGTCTGCTTAT-TGCACAAATATATTTTAATGAGCTTTGTT 482
                      **       * *  *  **  *   **  * **    ***  *    **     ** ** 

consensus_8561#0      TTGTACGCTAACACTTAACTTCTAGACCACTGAGTCAGTATCCAATGATGGCATTGTCTA 650
consensus_8561#1      CT---------------------------------------------------------- 484
                       *                                                          

consensus_8561#0      ACTTCAATTGATCCATGATCTTGCATAACCATTAATCTATTGTCTGAAGCAGATACCTGT 710
consensus_8561#1      ------------------------------------------------------------
                                                                                  

consensus_8561#0      CTCTATCTGACACGGATTGGACTCCAATG 739
consensus_8561#1      -----------------------------