cluster # 8567

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Schistosoma mansoni
cluster # 8567 cluster # 8567 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8567#0 length = 833 sequences # 4

consensus_8567#1 length = 274 sequences # 2
consensus_8567#2 length = 209 sequences # 1

consensusID : consensus_8567#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 833
fasta sequence

                              [CTGAGCCATCCTTTCTAGTTCTATCCAATTATTATTATTATTATTATTATTAATAATGGCTTTATTCAATATTATAATCTGATACAATATAGAATTCTCAGCACGAGTTATTTCAACAAGTTCTTCACCAAAAAAAAAACAAAAAAAAACCCAAGAAAAACAAACAAAAAAAAGGAATGAAAAAGGTTTAAGAAAAACTGAGTTTATACAAATTATCGAATTTGAGACATGCTTAAGAATACAGGTTATTTACTAGGTCAACTCTAACAGCCTGTTGGTCACAAAGTAAATTTGCTAAGTAAGGTATTACAGAACGTTTATAGACTTGCTTGCGTGTATGGATTTTAATGTATTTACGTCTCGTTCTATCAGAAGATATACAAGGAGAAAGATATGAATGAAGCGGATGGTTAGTATCTGATAAGATAACACCTGCAAAGAGTTTGCAAGATTTAAGATGTCTATCCACAAGCATATTAACAATGACTTCAAAAGATTCACCACATACCTTGCAAACTGCCTTCAGCACTCTACGCAAAATAGCAAAGTCTTTTCTCAAAAGCCCGGGAAAGAATAATGGAGAACAATATAAAATAATAGGTAATATGCAGGAATTTACAAATTGTAAGAGTAAATGGCGAGTAATCCCAAAAGCATGCAGCCTCTTTATGTAGTATGTCAAACGGTAAA-CTTTTTTCGATAACAGTAAAACATGAGAAGACCAAGAAAGATCAGAGGAAAAAGTAACACCAAGATATTTGATCTTCGACACTGTGTTTATTAAGGAGTCTCCAATGGCACAAGCAT-TATGGGATCTTTACAACATACAAAAT]

[+] EMBL CD085368             [CTGAGCCATCCTTTCTAGTTCTATCCAATTATTATTATTATTATTATTATTAATAATGGCTTTATTCAATATTATAATCTGATACAATATAGAATTCTCAGCACGAGTTATTTCAACAAGTTCTTCACCAAAAAAAAAACAAAAAAAAACCCAAGAAAAACAAACAAAAAAAAGGAATGAAAAAGGTTTAAGAAAAACTGAGTTTATACAAATTATCGAATTTGAGACATGCTTAAGAATACAGGTTATTTACTAGGTCAACTCTAACAGCCTGTTGGTCACAAAGTAAATTTGCTAAGTAAGGTATTACAGAACGTTTATAGACTTGCTTGCGTGTATGGATTTTAATGTATTTACGTCTCGTTCTATCAGAAGATATACAAGGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD074205             [                                                                                                                                                                              atATAAAAAAGGTTTAAGAAAATCTGAGTTTATACAAATTATCGAATATGAGACATGTTTAAGAAGACAGGTTATTTACTAGGTCAACTCTAACAGCCTGTTCGTCACAAAGTAAATTAGCTAAGTAAGGTATTACAGAACTTTTATAGATTTGCTTGCGTGCATGAATTTTAATGTATTTACGTCTCGTTCTACCAGAAGATATACAAGGAGAAAGATATGAATGAAGCGGATGGTTAGTATCTGATAAGATAACACCTGCAAAGAGTTTGCAAGATTTAAGATGTCTATCCACAAGCATATTAACAATGACTTCAAAAGATTCACCACATACCTTGCAAACTGCCTTCAGCACTCTACGCAAAATAGCAAAGTCTTTTCTCAAAAGCCCAGGAAAGAATAATGGAGAACAATATAAAATAATAGGTAATATGCAGGAATTTACAAATTGTAAGAGTAAACGGCGAGTAATCCCAAAAGCATGCAGCCTCTTTATGTAGTATGTCAAACGGTAAA CTNTTTTCGATAACAGCAAAACAT                                                                                                                        ]
[+] EMBL CD156288             [                                                                                                                                                                                                                                                                                                                                                                                          TACAAGGAGAAAGATATGAATGAAGCGGATGGTTAGTATCTGATAAGATAACACCTGCCAAGAGTTTGGAAGACTTAAGATGTCTATCCACAAGCATATTAACAATGACTTCAAAAGATTCACCACATACCTTGCAAACTGCCTTCAGCACTCTACGCAAAATAGCAAAGTCTTTTCTCAAAAGCCCGGGAAAGAATAATGGAGAACAATATAAAATAATAGGTAATATGCAGGAATTTGCAAATTGTAAGAGTAAATGGCGAGTAATCTCAAAAGCATGCAGCCTCTTTATGTAGTATGTCAAACGGTAAA CTTTTTTCGATAACAGTAAAACATGAGAAGACCAAGAAAGATCAGAGGAAAAAGTAACACCAAGATATTTGATCTTCGACACTGTGTTTATTAAGGAGTCTCCAATGGCACAAGCAT TATGGGATC                 ]
[-] EMBL CD112671             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAACAGCAAAGTCTTTTCTCAAAAGCCCGGGAAAGAATAATGGGGAACAATATAGAATAATAGGTAATATGCAGGAATTTACAAATTGTAAGAGTAAATGGCGAGTAATCCCAAAAGCATGCAGCCTCTTTATGTAGTATGTCAAACGGTAAACCTTTTTTCGATAACAGTAAGACATGAGAAGACCAAGAAAGATCAGAGGAAAAAGTAACACCAGGATATTTGACCTTCAACACTATGTTTATTAAAGAGTCTCCAATGGCACAAGCATATATAACTTATTTACAACATACAAAAT]




>consensus_8567#0
CTGAGCCATCCTTTCTAGTTCTATCCAATTATTATTATTATTATTATTATTAATAATGGC
TTTATTCAATATTATAATCTGATACAATATAGAATTCTCAGCACGAGTTATTTCAACAAG
TTCTTCACCAAAAAAAAAACAAAAAAAAACCCAAGAAAAACAAACAAAAAAAAGGAATGA
AAAAGGTTTAAGAAAAACTGAGTTTATACAAATTATCGAATTTGAGACATGCTTAAGAAT
ACAGGTTATTTACTAGGTCAACTCTAACAGCCTGTTGGTCACAAAGTAAATTTGCTAAGT
AAGGTATTACAGAACGTTTATAGACTTGCTTGCGTGTATGGATTTTAATGTATTTACGTC
TCGTTCTATCAGAAGATATACAAGGAGAAAGATATGAATGAAGCGGATGGTTAGTATCTG
ATAAGATAACACCTGCAAAGAGTTTGCAAGATTTAAGATGTCTATCCACAAGCATATTAA
CAATGACTTCAAAAGATTCACCACATACCTTGCAAACTGCCTTCAGCACTCTACGCAAAA
TAGCAAAGTCTTTTCTCAAAAGCCCGGGAAAGAATAATGGAGAACAATATAAAATAATAG
GTAATATGCAGGAATTTACAAATTGTAAGAGTAAATGGCGAGTAATCCCAAAAGCATGCA
GCCTCTTTATGTAGTATGTCAAACGGTAAACTTTTTTCGATAACAGTAAAACATGAGAAG
ACCAAGAAAGATCAGAGGAAAAAGTAACACCAAGATATTTGATCTTCGACACTGTGTTTA
TTAAGGAGTCTCCAATGGCACAAGCATTATGGGATCTTTACAACATACAAAAT

consensusID : consensus_8567#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 274
fasta sequence

                              [CAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGAGACCATGGAGTGGGTTTCAGAGGGTGTTGGTGAGTTGGAGGAATCCGACCGTCAGGATAGTGCTCATGTTGTGGAGCAGCCGAGTGAAGTAGATGTCGCAGTTTCTGAAACGCAAGTGGAGGTGGAGACTGTTGAGTTGGTGTCAGTGAAGGAGGCTAAGGTGGACGAGGCCCCAGTGGAATCGATGACAGTCTC]

[+] EMBL CD187979             [CAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGAGACCATGGAGTGGGTTTCAGAGGGTGTTGGTGAGTTGGAGGAATCCGACCGTCAGGATAGTGCTCATGTTGTGGAGCAGCCGAGTGAAGTAGATGTCGCAGTTTCTGAAACGCAAGTGGAGGTGGAGACTGTTGAGTTGGTGTCAGTGAAGGAGGCTAAGGTGGACGAGGCCCCAGTGGAATCGATGACAGTCTC]
[+] EMBL CD187982             [CAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGAGACCATGGAGTGGGTTTCAGAGGGTGTTGGTGAGTTGGAGGAATCCGACCGTCAGGATAGTGCTCATGTTGTGGAGCAGCCGAGTGAAGTAGATGTCGCAGTTTCTGAAACGCAAGTGGAGGTGGAGACTGTTGAGTTGGTGTCAGTGAAGGAGGCTAAGGTGGACGAGGCCCCAGTGGAATCGATGACAGTCTC]




>consensus_8567#1
CAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATT
CGACTGGAGCGAACACAGAGACCATGGAGTGGGTTTCAGAGGGTGTTGGTGAGTTGGAGG
AATCCGACCGTCAGGATAGTGCTCATGTTGTGGAGCAGCCGAGTGAAGTAGATGTCGCAG
TTTCTGAAACGCAAGTGGAGGTGGAGACTGTTGAGTTGGTGTCAGTGAAGGAGGCTAAGG
TGGACGAGGCCCCAGTGGAATCGATGACAGTCTC

consensusID : consensus_8567#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [TTATTCTACATATATATTCTTATTGGATAGCTATTGAGTAATTAGATAGTGTATATCTATATTCTCCTTATTATAAGCTTCATTTTGACCTATGAATTATTATTATACGAATAACCGTTCCTGAATTATATTCAGTTTATTGATTACAGTCTCCCACGTTCACAGTCACATTTGGCTTGATCTTGTACAAATTTAACTTTCTATTGAAT]

[+] EMBL CD064292             [TTATTCTACATATATATTCTTATTGGATAGCTATTGAGTAATTAGATAGTGTATATCTATATTCTCCTTATTATAAGCTTCATTTTGACCTATGAATTATTATTATACGAATAACCGTTCCTGAATTATATTCAGTTTATTGATTACAGTCTCCCACGTTCACAGTCACATTTGGCTTGATCTTGTACAAATTTAACTTTCTATTGAAT]




>consensus_8567#2
TTATTCTACATATATATTCTTATTGGATAGCTATTGAGTAATTAGATAGTGTATATCTAT
ATTCTCCTTATTATAAGCTTCATTTTGACCTATGAATTATTATTATACGAATAACCGTTC
CTGAATTATATTCAGTTTATTGATTACAGTCTCCCACGTTCACAGTCACATTTGGCTTGA
TCTTGTACAAATTTAACTTTCTATTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8567#0      CTGAGCCATCCTTTCTAGTTCTATCCAATTATTATTATTATTATTATTATTAATAATGGC 60
consensus_8567#2      ------------------------------------------------------------
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      TTTATTCAATATTATAATCTGATACAATATAGAATTCTCAGCACGAGTTATTTCAACAAG 120
consensus_8567#2      ------------------------------------------------------------
consensus_8567#1      -------------------------------CAACCAATCGTTCCCGTTCCGGTTGTGCT 29
                                                                                  

consensus_8567#0      TTCTTCACCAAAAAAAAAACAAAAAAAAACCCAAGAAAAACAAACAAAAAAAAGGAATGA 180
consensus_8567#2      --------------------------TTATTCTACATATATATTCTTATTGGATAGCTAT 34
consensus_8567#1      GCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGAGACCATGGAG 89
                                                  *  * *          *  *            

consensus_8567#0      AAAAGGTTTAAGAAAAACTGAGTTTATACAAATTATCGAATTTGAGACATGC-TTAAGAA 239
consensus_8567#2      TGAGTAATTAGATAG---TGTATATCTATATTCTCCTTATTATAAGCTTCAT-TTTGACC 90
consensus_8567#1      TGGGT-TTCAGAGGGTGTTGGTGAGTTGGAGGAATCCGACCGTCAGGATAGTGCTCATGT 148
                             * *        **      *  *        *   * **        *     

consensus_8567#0      TACAGGTTATTT-ACTAGGTCAACTCTAACAGCCTGTTGGTCACAAAGTAAATTTGCTAA 298
consensus_8567#2      TATGAATTATT--ATTATACGAA---TAACCGTTCCTGAATTATA--TTCAGTTTATTGA 143
consensus_8567#1      TGTGGAGCAGCCGAGTGAAGTAGATGTCGCAGTTTCTGAAACGCAA-GTGGAGGTGGAGA 207
                      *       *    * *     *    *  * *    *       *   *     *    *

consensus_8567#0      GTAAGGTATTACAGAACGTTTATAGACTTGCTTGCGTGTATGGATTTTAATGTATTTACG 358
consensus_8567#2      TTACAGTCTCCCA---CGTTCACAGTCACATTTG---GCTTGATCTTGTACAAATTTAAC 197
consensus_8567#1      CTGTTGAGTTGGTGT-CAGTGAAGGAGGCTAAGGTGGACGAGGCCCCAGTGGAATCGATG 266
                       *   *  *       *  * *  *        *       *           **  *  

consensus_8567#0      TCTCGTTCTATCAGAAGATATACAAGGAGAAAGATATGAATGAAGCGGATGGTTAGTATC 418
consensus_8567#2      T----TTCTATTGAAT-------------------------------------------- 209
consensus_8567#1      ACAGTCTC---------------------------------------------------- 274
                            **                                                    

consensus_8567#0      TGATAAGATAACACCTGCAAAGAGTTTGCAAGATTTAAGATGTCTATCCACAAGCATATT 478
consensus_8567#2      ------------------------------------------------------------
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      AACAATGACTTCAAAAGATTCACCACATACCTTGCAAACTGCCTTCAGCACTCTACGCAA 538
consensus_8567#2      ------------------------------------------------------------
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      AATAGCAAAGTCTTTTCTCAAAAGCCCGGGAAAGAATAATGGAGAACAATATAAAATAAT 598
consensus_8567#2      ------------------------------------------------------------
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      AGGTAATATGCAGGAATTTACAAATTGTAAGAGTAAATGGCGAGTAATCCCAAAAGCATG 658
consensus_8567#2      ------------------------------------------------------------
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      CAGCCTCTTTATGTAGTATGTCAAACGGTAAACTTTTTTCGATAACAGTAAAACATGAGA 718
consensus_8567#2      ------------------------------------------------------------
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      AGACCAAGAAAGATCAGAGGAAAAAGTAACACCAAGATATTTGATCTTCGACACTGTGTT 778
consensus_8567#2      ------------------------------------------------------------
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      TATTAAGGAGTCTCCAATGGCACAAGCATTATGGGATCTTTACAACATACAAAAT 833
consensus_8567#2      -------------------------------------------------------
consensus_8567#1      -------------------------------------------------------