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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1130 fasta sequence
[GAATTGAATGGAACAACAATCAACAACCAAAAGCTTTCATCTTAACAGTCCAATTACACTATACATATTGAAGAACAATATTTCTTACATTTTAAAGAATAATTCAATCCAGAAAAGAGAGAAGAAATACAAACATTCGTGTAAACAGAGGAAAAAAGGTAAGCAGAAAAAGAGAGGAGACAAAAGAAACAAATAAAAATGAGCCATAAAGATTGGACAACGAAAATGTTATGAAACACAATACAACAGAATGATGATTATATAATAAGGAGTTCATAGAAAGACAAAAGGTATCTTTTTTAAAGTGGTATACAGAATAACCAAACCCTTTTAAAACGACATTGATAATTTTAATTATACGAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGTGATTAGGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTGATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAAGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTTTCCAATTCATAATTTTTTTATACGTTTCTTGTGGTGTAGCTGAGCAAAACGGTGGGTAACCTATAAGCATTTCATACATAATAACACCAAGTGACCACAAATCACAAGAATTTGTATAACCATGATGTTGAAATACTT]
[+] EMBL CD146761 [GAATTGAATGGAACAACAATCAACAACCAAAAGCTTTCATCTTAACAGTCCAATTACACTATACATATTGAAGAACAATATTTCTTACATTTTAAAGAATAATTCAATCCAGAAAAGAGAGAAGAAATACAAACATTCGTGTAAACAGAGGAAAAAAGGTAAGCAGAAAAAGAGAGGAGACAAAAGAAACAAATAAAAATGAGCCATAAAGATTGGACAACGAAAATGTTATGAAACACAATACAACAGAATGATGATTATATAATAAGGAGTTCATAGAAAGACAAAAGGTATCTTTTTTAAAGTGGTATACAGAATAACCAAACCCTTTTAAAACGACATTGATAATTTTAATTATACGAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGTGATTAGGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATAC ]
[+] EMBL CD152637 [ TATAATAAGGAGTTCATAGAATGACAAAAGGTATCTTTTTTAAAGTGGTATACAGAATAACCAAACCCTTTTAAAGCGACATTGATAATTTTAATTATACGAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGTGATTAAGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAACAATTAGCTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATGGGACACCATACTA ]
[+] EMBL CD118644 [ TGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTA ]
[-] EMBL CD155585 [ GTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTGATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTC ]
[-] EMBL CD155572 [ GTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTGATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTC ]
[+] EMBL CD147811 [ AGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAAGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTTTCCAATTCATAATTTTTTTATACGTTTCTTGTGGTGTAGCTGAGCAAAACGGTGGGTAACCTATAAGCATTTCATACATAATAACACCAAGTGACCACAAATCACAAGAATTTGTATAACCATGATGTTGAAATACTT]
consensusID : consensus_8572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence
[ATTGTGATGGATGGGGGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAGGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTGTCCAATTCATAATTTTTCTATACGTTTCTTGTGGTGTCGCTGAGCAAAACGGTGGGTAATCTATAAGCATTTC]
[+] EMBL BG931028 [ATTGTGATGGATGGGGGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAGGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTGTCCAATTCATAATTTTTCTATACGTTTCTTGTGGTGTCGCTGAGCAAAACGGTGGGTAATCTATAAGCATTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8572#0 GAATTGAATGGAACAACAATCAACAACCAAAAGCTTTCATCTTAACAGTCCAATTACACT 60
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 ATACATATTGAAGAACAATATTTCTTACATTTTAAAGAATAATTCAATCCAGAAAAGAGA 120
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 GAAGAAATACAAACATTCGTGTAAACAGAGGAAAAAAGGTAAGCAGAAAAAGAGAGGAGA 180
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 CAAAAGAAACAAATAAAAATGAGCCATAAAGATTGGACAACGAAAATGTTATGAAACACA 240
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 ATACAACAGAATGATGATTATATAATAAGGAGTTCATAGAAAGACAAAAGGTATCTTTTT 300
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 TAAAGTGGTATACAGAATAACCAAACCCTTTTAAAACGACATTGATAATTTTAATTATAC 360
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 GAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGT 420
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 GATTAGGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACG 480
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 AGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTA 540
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 TGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAA 600
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 GGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATC 660
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 ATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTG 720
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 ATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTC 780
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 GAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGG-TCGTTCAC 839
consensus_8572#1 ----------------------------------ATTGTGATGGATGGGGGGTCGTTCAC 26
* ** ** * ** ** ********
consensus_8572#0 GTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCG 899
consensus_8572#1 GTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCG 86
************************************************************
consensus_8572#0 ATAAACGTGTTTCTGCTCCACAACATAAAGATTGTATTAAGTTTCTTGAATGATTACTAA 959
consensus_8572#1 ATAAACGTGTTTCTGCTCCACAACATAAGGATTGTATTAAGTTTCTTGAATGATTACTAA 146
**************************** *******************************
consensus_8572#0 TAGGCATTTCAGGTGGAAAAAATAATGCCTCTTTCCAATTCATAATTTTTTTATACGTTT 1019
consensus_8572#1 TAGGCATTTCAGGTGGAAAAAATAATGCCTCTGTCCAATTCATAATTTTTCTATACGTTT 206
******************************** ***************** *********
consensus_8572#0 CTTGTGGTGTAGCTGAGCAAAACGGTGGGTAACCTATAAGCATTTCATACATAATAACAC 1079
consensus_8572#1 CTTGTGGTGTCGCTGAGCAAAACGGTGGGTAATCTATAAGCATTTC-------------- 252
********** ********************* *************
consensus_8572#0 CAAGTGACCACAAATCACAAGAATTTGTATAACCATGATGTTGAAATACTT 1130
consensus_8572#1 ---------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||