These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence [GTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTACAGTTCTATCAGGCTTCTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCAGCTGTTTTGGAGATCCTGGTGAAACGTCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCATTAGGTTTGTTTTGATTCTTAGATTTGGACAAATGATTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCACCCCCTACCTTTGGACGAGCATATAGGCGCAGCAAACACAAAGCGATCTCGTGAACAGATTCTTCGCTCACGCTAAACATTTCCCACCAAGCTGGGTGGCGTGGCAAAGGAATGTTGAGCTTACATGATGCCAGATAAATGCAACCACATGCAATTGCTTCCGGAAGATAACGAACAAATATATCAGTTCGAAGACTGTCGTTCATGTAATTCCAAGCAGTTTGTACAAGGTTTTTGTTGGTTTCATGGTCCAAAGCCTGTAAGTAGCAAATAACAAGCTTATGAGG] [+] EMBL CD200665 [GTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTACAGTTCTATCAGGCTTCTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCAGCTGTTTTGGAGATCCTGGTGAAACGTCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCATTAGGTTTGTTTTGATTCTTAGATTTGGACAAATGATTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCACCCC ] [+] EMBL CD161631 [ TAGGTTTGTTTTGATTCTTAGATTTGGACAAATGATTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCAACATCTACCTTTGGACGAGCATATAGGCGCAGCAAACACAAAGCGATCTCGTGAACAGATTCTTCGCTCACGCTAAACATTTCCCACCAAGCTGGGTGGCGTGGCAAAGGAATGTTGAGCTTACATGATGCCAGATAAATGCAACCACATGCAATTGCTTCCGGAAGATAACGAACAAATATATCAGTTCGAAGACTGTCGTTCATGTAATTCCAAGCAGTTTGTACAAGGTTTTTGTTGGTTTCATGGTCCAAAGCCTGTAAGTAGCAAATAACAAGCTTATGAGG] consensusID : consensus_8573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 657 fasta sequence [ATGATGTCGACGTCTTTTATCGGATTCTGTGTTATTAGATGGAATATTTGAGTAGGCAGCTGGTCGGATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTATCAGGCTTCTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCAGCTGTTTTGGAGATCCTGGTGAAACGTCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCAATAAGTTTGGTTGAATTTTAAATTTGGACCAATGATTTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCAACATCTACCTTTGGACGAGCATATAGGCGCAGCAAAGGGAATTTGGTCCCAAATCGAATTACCCAAGAGCC] [-] EMBL CD152271 [ATGATGTCGACGTCTTTTATCGGATTCTGTGTTATTAGATGGAATATTTGAGTAGGCAGCTGGTCGGATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTATCAGGCTTCTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCAGCTGTTTTGGAGATCCTGGTGAAACGTCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACT ] [+] EMBL CD132243 [ ATGGAATATTTGAGTAGGCAGCTGGTCGAATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTATCAGGCTTCTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCAGCTGTTTTGGAGATCCTGGTGAAACATCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTC ] [-] EMBL CD123638 [ GCCAGCTGTTTTGGAGATCCTGGTGAAACGTCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGATAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCAATAAGTTTGGTTGAATTTTAAATTTGGACCAATGATTTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCAACATCTACCTTTGGACGAGCAT ] [-] EMBL CD123584 [ TGCCAGATTTCGATGCTGTAATGGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCAGTAGGTTTGTTTGATTCTTAGATTTGGACAAATGA TTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCAACATCTACCTTTGGACGAGCATATAGGCGCAGCAAAGGGAATTTGGTCCCAAATCGAATTACCCAAGAGCC] consensusID : consensus_8573#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GCCATTTGGTTTGTGAGGTGTATACATAGGGTAAATTTGCCTTATTGCTCTCATTCTCTCTCTTCTTAGCAAATACAATTCATCTTTGTTTTTTTTATTTTCCTCGTCTTACCCCCACCACCATTTTCCTTTATCGATTAGACATATGTCTCACCACCCTACAATTTTATGTCGTACCCCGCCATTGCCGTCACCACTATCTTGTATACGTTATAAGTCCCATCCGACTCAGCATGCCTTTATTCTATATATCACATCAGTACTAGCAGCGATAACAACAAAAACAACACAATTCTAATTGCGCCTTCACCTCACCCTCTCTCTCTCCACTCTTATGTCGACGTCTTTTATCTGATTCTGTGTTATTAGATGGAATATTTGAGTAGGCAGCTGGTCGGATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTACATAATTCAATAAACAATTTAACATTATTCAACAATGAAACAGTAAAAAAAAGAATTTC] [+] EMBL CD148459 [GCCATTTGGTTTGTGAGGTGTATACATAGGGTAAATTTGCCTTATTGCTCTCATTCTCTCTCTTCTTAGCAAATACAATTCATCTTTGTTTTTTTTATTTTCCTCGTCTTACCCCCACCACCATTTTCCTTTATCGATTAGACATATGTCTCACCACCCTACAATTTTATGTCGTACCCCGCCATTGCCGTCACCACTATCTTGTATACGTTATAAGTCCCATCCGACTCAGCATGCCTTTATTCTATATATCACATCAGTACTAGCAGCGATAACAACAAAAACAACACAATTCTAATTGCGCCTTCACCTCACCCTCTCTCTCTCCACTCTTATGTCGACGTCTTTTATCTGATTCTGTGTTATTAGATGGAATATTTGAGTAGGCAGCTGGTCGGATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTACATAATTCAATAAACAATTTAACATTATTCAACAATGAAACAGTAAAAAAAAGAATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8573#0 -----------------------------------------------------------G 1 consensus_8573#1 ATGATGTCGACGTCTTTTATCGGATTCTGTGTTATTAGATGGAATATTTGAGTAGGCAGC 60 consensus_8573#2 ------------------------------------------------------------ consensus_8573#0 TGTTGTGACGGTCTGTTGTTTCTTGAGCTC---GTTTTCTCGTACAGTTCTATCAGGCTT 58 consensus_8573#1 TGGTCGGATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTATCAGGCTT 120 consensus_8573#2 -----------------GCCATTTGGTTTGTGAGGTGTATACATAGGGTAAATTTGCCTT 43 * *** * * * * * * * ** * *** consensus_8573#0 CTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCA-GCTGTTTTGGAG 117 consensus_8573#1 CTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCA-GCTGTTTTGGAG 179 consensus_8573#2 ATTGCTCTCATTCTCTCTCTTCTTAGCAA----ATACAATTCATCTTTGTTTTTTTTATT 99 ** ** * ** * *** * * ** **** * * * **** consensus_8573#0 ATCCTGGTGAAACGTCT-TCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTA 176 consensus_8573#1 ATCCTGGTGAAACGTCT-TCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTA 238 consensus_8573#2 TTCCTCGTCTTACCCCCACCACCATTTTCCTTTATCGATTAGACATATGTCTCACCACCC 159 **** ** ** * *** * *** * * * *** ** * * consensus_8573#0 CCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTT----GC 232 consensus_8573#1 CCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTT----GC 294 consensus_8573#2 TACAATTTTATGTCGTACCCCGCCATTGC-CGTCACCACTATCTTGTATACGTTATAAGT 218 ** **** * * * ** * * * ** **** **** * consensus_8573#0 TGCGACCGCTTTGGCATTAGCTAAGGCGCT-TGCTAAAAGCGAGTTTGGGGCGAAAACAG 291 consensus_8573#1 TGCGACCGCTTTGGCATTAGCTAAGGCGCT-TGCTAAAAGCGAGTTTGGGGCGAAAACAG 353 consensus_8573#2 CCCATCCGACTCAGCATGCCTTTATTCTATATATCACATCAGTACTAGCAGCGATAACAA 278 * *** * **** * * * * * * * * * * **** **** consensus_8573#0 TAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCATTAGGTTTGT 351 consensus_8573#1 TAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCAATAAGTTTGG 413 consensus_8573#2 CAAAAACAACA-CAATTCTAATTGCGCCTTCACCTCACCCTCTCTCTCTCCACTCTTATG 337 * ** * * ** * * * ** ** ** * * * ** consensus_8573#0 TTTGATTCTTAGATTTGGACAAATGATTTT-GGGGTGAGTTATAACCGAAACTGTGGTCG 410 consensus_8573#1 TT-GAATTTTAAATTTGGACCAATGATTTTTGGGGTGAGTTATAACCGAAACTGTGGTCG 472 consensus_8573#2 TCGACGTCTTTTATCTGATTCTGTGTTATT--AGATGGA--ATATTTGAGTAGGCAGCTG 393 * * ** ** ** ** * ** * ** *** ** * * * consensus_8573#0 GACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCC 470 consensus_8573#1 GACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCC 532 consensus_8573#2 G-TCGGATAATTGGTCGTCTTTTG-CTCTCAGAGTTTTCTTGTACAGTTCTACATAATTC 451 * ** ** **** ** ** ** * ** * ******* * * * * * * consensus_8573#0 TTTGCTTCTGCCTGAGATTTCCTGA-GTTGAGCTAGAACTGACTCAAGTTTCCCACCCCC 529 consensus_8573#1 TTTGCTTCTGCCTGAGATTTCCTGA-GTTGAGCTAGAACTGACTCAAGTTTCCCAACATC 591 consensus_8573#2 AATAAA-CAATTTAACATTATTCAACAATGAAACAGTAAAAAAAAGAATTTC-------- 502 * * * * *** * *** ** * * * **** consensus_8573#0 TACCTTTGGACGAGCATATAGGCGCAGCAAACACAAAGCGATCTCGTGAACAGATTCTTC 589 consensus_8573#1 TACCTTTGGACGAGCATATAGGCGCAGCAAAGGGAATTTGGTCCCA-AATCGAATTACCC 650 consensus_8573#2 ------------------------------------------------------------ consensus_8573#0 GCTCACGCTAAACATTTCCCACCAAGCTGGGTGGCGTGGCAAAGGAATGTTGAGCTTACA 649 consensus_8573#1 AAGAGCC----------------------------------------------------- 657 consensus_8573#2 ------------------------------------------------------------ consensus_8573#0 TGATGCCAGATAAATGCAACCACATGCAATTGCTTCCGGAAGATAACGAACAAATATATC 709 consensus_8573#1 ------------------------------------------------------------ consensus_8573#2 ------------------------------------------------------------ consensus_8573#0 AGTTCGAAGACTGTCGTTCATGTAATTCCAAGCAGTTTGTACAAGGTTTTTGTTGGTTTC 769 consensus_8573#1 ------------------------------------------------------------ consensus_8573#2 ------------------------------------------------------------ consensus_8573#0 ATGGTCCAAAGCCTGTAAGTAGCAAATAACAAGCTTATGAGG 811 consensus_8573#1 ------------------------------------------ consensus_8573#2 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||