These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1031 fasta sequence [AAGTGGCACGAGCGACCCAAGTGGCACGAGCGCCCCAAGTGGCACGAGCGCCCCAAGTACCCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGTTAACAACAGCATCATAATGCGAGGTATAGCCCTTAACCA-CAGCGCCTAGTGACTTGGGGTTTGGACTATTCGAATTCCCGCGTCCGCCATGTTGCCAGTCACATCTCTACGACGATACTATCTCGCACTATGACGAGCTGGATCATAATGATTTGCGAAGGCTCTACACGAATTGAATGGCATCCCACGACCTCGACCAAACATTCCTCTTCCTCTGCCTCTCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTGGGAGCATTCAAATCACTCACTGAATCTTGAGGTGCTTCTGTCGGAGCTATTCGTGGCCCCTGCCCTCTACCTACACGCATTCCTCGAGGTGTTCCCCTACCTGAGCCACGACCACGCACAAAGGTACTAATTGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGTTATCGTGTCGGCCTTTGTAGGTGCCACATGTTGCTGTTGCAAATGAGGCTTATCCTTTTTAG-TTTTTTCACCTCGTTTACTCTGCAACTTGGATAGCAGGATATCTGGGTCTTCACTATTCAGAGTGTCGTCCAGGAACAGTGAGAACCTGCTCTTCACTTCCACGGAGTACTGATAGGCGTGGTCAACACCAGCCATGACTACAGAACACACTGTGGACAAGCAGTCAACATGATCACCGCAGAGGAACGGAAATGGTGTGTACTAACTCAGCAAAACACAGCACTCACTGGTTAAAAACAATTGAATGGTAAGAGACCGTTTGGTACTGTTTGCTGTCCATTTTTGTGATCCTCATTAACCAAGAAGTG] [-] EMBL CD198509 [AAGTGGCACGAGCGACCCAAGTGGCACGAGCGCCCCAAGTGGCACGAGCGCCCCAAGTACCCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGTTAACAACAGCATCATAATGCGAGGTATAGCCCTTAACCA CAGCGCCTAGTGACTTGGGG ] [+] EMBL CD198291 [ TTTAAGCCAGCTGACAGTACTCCGGAGCAAGCAGAGTTCACAACAGCATCATAATGCGAGGTACAGCCCTTAACCATCAGCGCCTAGTGAGCACTCGTTTGGACTATTCGAATTCCCGCGTCCGCCATGTTGCCAGTCACATCTCTACGACGATACTATCTCGCACTATGACGAGCTGGATCATAATGATTTGCGAAGGCTCTACACGAATTGAATGGCATCCCACGACCTCGACCAAACATTCCTCTTCCTCTGCCTCTCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTGGGAGCATTCAAATCACTCACTGAATCTTGAGGTGCTTCTGTCGGAGCTATT ] [-] EMBL CD171148 [ TCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTGGGAGCATTCAAATCACTCACTGAATCTTGAGGTGCTTCCGTCGGAGCTATTCGTGGCCCCTGCCCTCTACCTACACGCATTCCTCGAGGTGTTCCCCTACCTGAGCCACGACCACGCACAAAGGTACTAATTGGCTCATCTGTCCCCTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGTTATCGTGTCGGCCTTTGT ] [-] EMBL CD188407 [ GAGGTGTTCCCCTACCTGAGCCACGACCACGCACAAAGGTACTAATTGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGTTATCGTGTCGGCCTTTGTAGGTGCCACATGTTGCTGTTGCAAATGAGGCTTATCCTTTTTAG TTTTTTCACCTCGTTTACTCTGCAACTTGGATAGCAGGATATCTGGGTCTTCACTATTCAGAGTGTCGTCCAGGAACAGTGAGAACCTGCTCTTCACTTCCACGGAGTACTGATAGGCGTGGTCAACACCAGCCATGACTACAGAACACACTGTGGACAAGCA ] [+] EMBL CD084969 [ CTGAGCCACGACCACGCACAAAGGTACTAATTGGCACATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGTTATCGTGTCGGCCTTTGTAGGTGCCACATGTTGCTGTTGCAAATGAGGCTTATCCTTTTTAGTTTTTTTCACCTCGTTTACTCTGCAACTTGGATAGCAGGATATCTGGGTCTTCACTATTCAGAGTGTCGTCCAGGAACAGTGAGAACCTGCTCTTCACTTCCACGGAGTACTGATAGGCGTGGTCAACACCAGCCATGACTACAGAACACACTGTGGACAAGCGGTCAACATGATCACCGCAGAGGAACGGAAATGGTGTGTACTAACTCAGCAAAACACAGCACTCACTGGTTAAAAACAATTGAATGGTAAGAGACCGTTTGGTACTGTTTGCTGTCCATTTTTGTGATCCTCATTAACCAAGAAGTG] consensusID : consensus_8576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 161 fasta sequence [GCGACTCCTGGACTCAGTCGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTCGCC] [-] EMBL CD141612 [GCGACTCCTGGACTCAGTCGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTCGCC] [-] EMBL CD141894 [ CGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8576#0 AAGTGGCACGAGCGACCCAAGTGGCACGAGCGCCCCAAGTGGCACGAGCGCCCCAAGTAC 60 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 CCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGTTAACAACAGCATCATA 120 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 ATGCGAGGTATAGCCCTTAACCACAGCGCCTAGTGACTTGGGGTTTGGACTATTCGAATT 180 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 CCCGCGTCCGCCATGTTGCCAGTCACATCTCTACGACGATACTATCTCGCACTATGACGA 240 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 GCTGGATCATAATGATTTGCGAAGGCTCTACACGAATTGAATGGCATCCCACGACCTCGA 300 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 CCAAACATTCCTCTTCCTCTGCCTCTCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTG 360 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 GGAGCATTCAAATCACTCACTGAATCTTGAGGTGCTTCTGTCGGAGCTATTCGTGGCCCC 420 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 TGCCCTCTACCTACACGCATTCCTCGAGGTGTTCCCCTACCTGAGCCACGACCACGCACA 480 consensus_8576#1 -----------------------------------------------------GCGACTC 7 ** consensus_8576#0 AAGGTACTAATTGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGC 540 consensus_8576#1 CTGGACTCAGTCGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGC 67 ** * * ************************************************ consensus_8576#0 ACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATT 600 consensus_8576#1 ACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATT 127 ************************************************************ consensus_8576#0 AATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGT 660 consensus_8576#1 AATATTGCACCTTTGCTTACCTTTCGGAGTCGCC-------------------------- 161 ****************************** ** consensus_8576#0 TATCGTGTCGGCCTTTGTAGGTGCCACATGTTGCTGTTGCAAATGAGGCTTATCCTTTTT 720 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 AGTTTTTTCACCTCGTTTACTCTGCAACTTGGATAGCAGGATATCTGGGTCTTCACTATT 780 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 CAGAGTGTCGTCCAGGAACAGTGAGAACCTGCTCTTCACTTCCACGGAGTACTGATAGGC 840 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 GTGGTCAACACCAGCCATGACTACAGAACACACTGTGGACAAGCAGTCAACATGATCACC 900 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 GCAGAGGAACGGAAATGGTGTGTACTAACTCAGCAAAACACAGCACTCACTGGTTAAAAA 960 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 CAATTGAATGGTAAGAGACCGTTTGGTACTGTTTGCTGTCCATTTTTGTGATCCTCATTA 1020 consensus_8576#1 ------------------------------------------------------------ consensus_8576#0 ACCAAGAAGTG 1031 consensus_8576#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||