cluster # 8577

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Schistosoma mansoni
cluster # 8577 cluster # 8577 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8577#0 length = 603 sequences # 6

consensus_8577#1 length = 257 sequences # 1

consensusID : consensus_8577#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 603
fasta sequence

                              [TACACCAAGTGCCCACCAATCAACAGCTTTATTATAACCTTTGCTTAGAATAATTTCAGGAGCTAAATATTCTGGTGTACCACAGAGAGTCCATGTTCTACCTTTTACACGTTTAGCAAAACCAAAATCTGT-TATCTTTAAATATCCATATTGATCGATAAGAATATTTTCCGGTTTTAAATCTCTGTAGACTAATTCTAAATGATGTAGATATTCAAATGCCAATACCACTTGACTAGCATAGAATCGTGAATGACTCTCACTGAAACGACCAATGCGTCTTAAATGGGAAAACATTTCTCCTCCATTAACGAATTCCAATACCATATATAAATTGCTATTGTCTTTGAAATGGTAATCCAATCGGACAAGGAACGGGAATGAAATAGCCTGCAATATACGCTTTTCGTTTAACGTGTGTTCAACTTGTTTTAACTTCACCACCTTTTGTTTATCTAAAATCTTCATAGCATAATATTCCTTGCTGACTTTGTGCTGGACTAACATAACACGTCCAAAAGACCCAGTGCCCAAAGTTTTGATTCGGTCAAATGAATCCAAAGTGGCTGTGTTCTGAGCAGGCTTCTCCCATTTTTCTAGAAA]

[-] EMBL CD167015             [TACACCAAGTGCCCACCAATCAACAGCTTTATTATAACCTTTGCTTAGAATAATTTCAGGAGCTAAATATTCTGGTGTACCACAGAGAGTCCATGTTCTACCTTTTACACGTTTAGCAAAACCAAAATCTGT TATCTTAAAATATCCATATTGATCGATAAGAATATTTTCCGGTTTTAAATCTCTGTAGACTAATTCTAAATGATGTAGATATTCAAATGCCAATACCACTTGACTAGCATAGAATCGTGAATGACTCTCACTGAAACGACCAATGCGTCTTAAATGGGAAAACATTTCTCCTCCATTAACGAATTCCAATACCATATATAAATTG                                                                                                                                                                                                                                                                          ]
[+] EMBL CD180094             [                                                     TTTCAGGAGCTAAATATTCTGGTGTACCACAGAGAGTCCATGTTCTACCTTTTACACGTTTAGCAAAACCAAAATCTGT TATCTTTAAATATCCATATTGATCGATAAGAATATTTTCCGGTTTTAAATCTCTGTAGACTAATTCTAAATGATGTAGAAATTCAAATGCCAATACCACTTGACTAGCATAGAATCGT                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD147902             [                                                                                                      TTTTACACGTTTAGCAAAACCAAAATCTGT TATCTTTAAATATCCATATTGATCGATAAGAATATTTTCCGGTTTTAAATCTCTGTAGACTAATTCTAAATGATGTAGATATTCAAATGCCAATACCACTTGACTAGCATAGAATCGTGAATGACTCTCACTGAAACGACCAATGCGTCTTAAATGGGAAAACATTTCTCCTCCATTAACGAATTCCAATACCATATATAAATTGCTATTGTCTTTGAAATGGTAATCCAATCGGACAAGGAACGGGAATGAAATAGCCTGCAATATACGCTTTTCGTTTAACGTGTGTTCAACTTGTTTTAACTTCACCACCTTTTGTTTATCTAAAATCTTCATAGCATAATATTCCTTGCTGACTTTGTGCTGGACTAACATAACACGTCCAAAAGACCCAGTGCCCAAAGTTTTGATTCGGTCAAATGAATCCAA                                          ]
[+] EMBL CD115313             [                                                                                                                          CAAAATCTGTCTATCTTTAAATATCCATATTGATCGATAAGAATATTTTCCGGTTTTAAATCTCTGTACACTAATTCTAAATGATGTAGATATTCAAATGCCAATTCCACTTGACTGGCCTAGAATCGACAATGACTCTCACTGAAACGACCAATGCGTCTTAAATGGGAAAACATTTCTCCTCCATTAACGAATTCCAATACCATATATAAATTGCTATTGTCTTTGAAATGGTAATCCAATCGGACAAGGAACGGGAATGAAATAGCCTGCAATATACGCTTTTCGTTTAACGTGTGTTCAACTTGTTTTAACTTCACCACCTTTTGTTTATCTAAAATCTTCATAGCATAATATTCCTTGCTGACTCTGTGCTGGACTAACATAACACGTCCAAAAGACCCAGTGCCCAAAGTTTTGATTCGGTCAAATGAATCCAAAGTGGCTGTGTTCTGAGCAGGCTTCTCCCATTT         ]
[+] EMBL CD115849             [                                                                                                                          CAAAATCTGT TATCTTTAAATATCCATATTGATCGATAAGAATATTTTCCGGTTTTAAATCTCTGTAGACTAATTCTAAATGATGTAGATATTCAAATGCCAATACCACTTGACTAGCATAGAATCGTGAATGACTCTCACTGAAACGACCAATGCGTCTTAAATGGGAAAACATTTCTCCTCCATTAACGAATTCCAATACCATATATAAATTGCTATTGTCTTTGAAATGGTAATCCAATCGGACAAGGAACGGGAATGAAATAGCCTGCAATATACGCTTTTCGTTTAACGTGTGTTCGACTTGTTTTAACTTCACCACCTTTTGTTTATCTAAAATCTTCATAGCATAATATTCCTTGCTGACTTTGTGCTGGACTAACATAACACGTCCAAAAGACCCAGTGCCCAAAGTTTTGATTCGGTCAAATGAATCCAAAGTG                                      ]
[-] EMBL CD195930             [                                                                                                                                                                                                                                                                                         CTTAAATGGGAAAACATTTCTCCTCCATTAACGAATTCCAATACCATATATAAATTGCTATTGTCTNTGAAATGGTAATCCAATCGGACAAGGAACGGGAATGAAATAGCCTGCAATATACGCTTTTCGTTTAACGTGTGTTCAACTTGTTTTAACTTCACCACCTTTTGTTTATCTAAAATCTTCATAGCATAATATTCCTTGCTGACTTTGTGCTGGACTAACATAACACGTCCAAAAGACCCAGTGCCCAAAGTTTTGATTCGGTCAAATGAATCCAAAGTGGCTGTGTTCTGAGCAGGCTTCTCCCATTTTTCTAGAAA]




>consensus_8577#0
TACACCAAGTGCCCACCAATCAACAGCTTTATTATAACCTTTGCTTAGAATAATTTCAGG
AGCTAAATATTCTGGTGTACCACAGAGAGTCCATGTTCTACCTTTTACACGTTTAGCAAA
ACCAAAATCTGTTATCTTTAAATATCCATATTGATCGATAAGAATATTTTCCGGTTTTAA
ATCTCTGTAGACTAATTCTAAATGATGTAGATATTCAAATGCCAATACCACTTGACTAGC
ATAGAATCGTGAATGACTCTCACTGAAACGACCAATGCGTCTTAAATGGGAAAACATTTC
TCCTCCATTAACGAATTCCAATACCATATATAAATTGCTATTGTCTTTGAAATGGTAATC
CAATCGGACAAGGAACGGGAATGAAATAGCCTGCAATATACGCTTTTCGTTTAACGTGTG
TTCAACTTGTTTTAACTTCACCACCTTTTGTTTATCTAAAATCTTCATAGCATAATATTC
CTTGCTGACTTTGTGCTGGACTAACATAACACGTCCAAAAGACCCAGTGCCCAAAGTTTT
GATTCGGTCAAATGAATCCAAAGTGGCTGTGTTCTGAGCAGGCTTCTCCCATTTTTCTAG
AAA

consensusID : consensus_8577#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence

                              [GTTTAAATAAACAGAAGATAACTTACTGATACAACTTACTTTGCTTAGAATAATTTCAGGAGCTAAATATTCTGGTGTACCACAGAGAGTCCATGTTCTACCTTTTACACGTTTAGCAAAACCAAAATCTGTTATCTGTAAAAACAAAATTTATGAAAATTACAGAAAACATTAAAATATATATATATTCACTTAATTTCATTAAGTGATTAAACCAATCATGTCAAAGATTTAAGTTGTCTTCAAACTATTTCAAT]

[-] EMBL CD097878             [GTTTAAATAAACAGAAGATAACTTACTGATACAACTTACTTTGCTTAGAATAATTTCAGGAGCTAAATATTCTGGTGTACCACAGAGAGTCCATGTTCTACCTTTTACACGTTTAGCAAAACCAAAATCTGTTATCTGTAAAAACAAAATTTATGAAAATTACAGAAAACATTAAAATATATATATATTCACTTAATTTCATTAAGTGATTAAACCAATCATGTCAAAGATTTAAGTTGTCTTCAAACTATTTCAAT]




>consensus_8577#1
GTTTAAATAAACAGAAGATAACTTACTGATACAACTTACTTTGCTTAGAATAATTTCAGG
AGCTAAATATTCTGGTGTACCACAGAGAGTCCATGTTCTACCTTTTACACGTTTAGCAAA
ACCAAAATCTGTTATCTGTAAAAACAAAATTTATGAAAATTACAGAAAACATTAAAATAT
ATATATATTCACTTAATTTCATTAAGTGATTAAACCAATCATGTCAAAGATTTAAGTTGT
CTTCAAACTATTTCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8577#0      --TACACCAAGTGCCCACCAATCAACAGCTTTATTATAACCTTTGCTTAGAATAATTTCA 58
consensus_8577#1      GTTTAAATAAACAGAAGATAACTTACTGATACAACTTA--CTTTGCTTAGAATAATTTCA 58
                        *  *  **         **   ** * *  *   **  ********************

consensus_8577#0      GGAGCTAAATATTCTGGTGTACCACAGAGAGTCCATGTTCTACCTTTTACACGTTTAGCA 118
consensus_8577#1      GGAGCTAAATATTCTGGTGTACCACAGAGAGTCCATGTTCTACCTTTTACACGTTTAGCA 118
                      ************************************************************

consensus_8577#0      AAACCAAAATCTGTTATCTTTAAATATCCATATTGATCGATAAGAATATTTTCCGGTTTT 178
consensus_8577#1      AAACCAAAATCTGTTATCTGTAAA-AACAAAATTTATG---AAAATTACAGAAAACATTA 174
                      ******************* **** * * * *** **    ** * **         ** 

consensus_8577#0      AAATCTCTGTAGACTAATTCTAAATGATGTAGATATTCAAATGCCAATACCACTTGACTA 238
consensus_8577#1      AAATATATATATATTCACTTAATTTCATTAAGTGATTAAACCAATCATGTCAAAGATTTA 234
                      **** * * ** * * * *  *  * **  **  *** **      **  **      **

consensus_8577#0      GCATAGAATCGTGAATGACTCTCACTGAAACGACCAATGCGTCTTAAATGGGAAAACATT 298
consensus_8577#1      AGTTG---TCTTCAAACTATTTCAAT---------------------------------- 257
                         *    ** * **    * *** *                                  

consensus_8577#0      TCTCCTCCATTAACGAATTCCAATACCATATATAAATTGCTATTGTCTTTGAAATGGTAA 358
consensus_8577#1      ------------------------------------------------------------
                                                                                  

consensus_8577#0      TCCAATCGGACAAGGAACGGGAATGAAATAGCCTGCAATATACGCTTTTCGTTTAACGTG 418
consensus_8577#1      ------------------------------------------------------------
                                                                                  

consensus_8577#0      TGTTCAACTTGTTTTAACTTCACCACCTTTTGTTTATCTAAAATCTTCATAGCATAATAT 478
consensus_8577#1      ------------------------------------------------------------
                                                                                  

consensus_8577#0      TCCTTGCTGACTTTGTGCTGGACTAACATAACACGTCCAAAAGACCCAGTGCCCAAAGTT 538
consensus_8577#1      ------------------------------------------------------------
                                                                                  

consensus_8577#0      TTGATTCGGTCAAATGAATCCAAAGTGGCTGTGTTCTGAGCAGGCTTCTCCCATTTTTCT 598
consensus_8577#1      ------------------------------------------------------------
                                                                                  

consensus_8577#0      AGAAA 603
consensus_8577#1      -----