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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1186 fasta sequence
[ACGGGAACTGTCTGACGCATCCGTCACCAGAATGTTTTAAGAGATATTTGTGACAATGTGATGAATGGAAATCAAATGAAATACATCTATCTTCCAGATGTGTATTCTAAACACCGTTTATCAATATGTGTGCAAGAATTAAGCAAATTCTGTTCAGCGATTCCAGCTGCACTTATTTTGCTGATTATAAGCTGGTCATACTATGTAGTTACTTTTGTTGTAATCCAAGATTTAATCACTAGCACATTTCTATTGTTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTTTGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTTACTGCCAATGAAACAAAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTCGTGAATAATTTGTCCGTTACAAAACAGTTACCTTTACTTACTGTT-GGGAAAAGATTCAA-TGCCCAATTCT-GTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGTTACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGTTTTCTGTATTGTGTACTATGTTTTCTATTTGCTTTATCCTACATGCTAAAATACCTAAAGATTCGAACTACTAGTGTTGCTAATAATCGATCGTGGGATTTGTTTTGTGCATTTACTCTGTCGCTTTTATCGGCTGTGTTTGCAATGGCACTGTTAATCCTGCTCCTATTCCATACGTATTTAGTATTTAAAAATAAGTCTACGCTAGAATATTTTCGGCCCCCGAATTTTCGTGGTAACAGTCATCGTATATACGGTTTTAATCTTGGGTGGAAGAATAATTTTCTTCAAATATTTGGTAATAACATCAAGCATTGGCTGTTCCTGTATTTTTTAGTGAAGGAGATGGAGTCTCTTTCCAAATCCGAGAAATTCCAACTCATGAAGACTACTCCCTGTTGCTGTCGACTATTTAGTATTGACGAATGAGATCTATCTTTGTCACTTACATGTGTTCATACAATTCTGGCTGGATTTGTGATAATTTTCAAAAAAACTTTTGTCTACCTGTCATGTCAACTAGTTTTTCAAATAAATTAAATAT]
[+] EMBL CD079038 [ CGGGAACTGTCTGACGCATCCGTCACCAGAATGTTTTAAGAGATATTTGTGACAATGTGATGAATGGAAATCAAATGAAATACATCTATCTTCCAGATGTGTATTCTAAACACCGTTTATCAATATGTGTGCAAGAATTAAGCAAATTCTGTTCAGCGATTCCAGCTGCACTTATTTTGCTGATTATAAGCTGGTCATACTATGTAGTTACTTTTGTTGTAATCCAAGATTTAATCACTAGCACATTTCTATTGTTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTTTGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTTACTGCCAATGAAACAAAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTCGTGAATAATTTGTCCGTTACAAAACAGTTACCTTTACTTACTGTT GGGAAAAGATTCAA TGCCCAATTCT GTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGTTACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGnt ]
[+] EMBL CD083747 [agGGGAACTGTCTGACGCATCCGTCACCAGAATGTTTTAAGAGATATTTGTGACAATGTGATGAATGGAAATCAAATGAAATACATCTATCTTCCAGATGTGTATTCTAAACACCGTTTATCAATATGTGTGCAAGAATTAAGCAAATTCTGTTCAGCGATTCCAGCTGCACTTATTTTGCTGATTATAAGCTGGTCATACTATGTAGTTACTTTTGTTGTAATCCAAGATTTAATCACTAGCACATTTCTATTGTTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTTTGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTTACTGCCAATGAAACAAAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTCGTGAATAATTTGTCCGTTACAAAACAGTTACCTTTACTTACTGTT GGGAAAAGATTCAA TGCCCAATTCT GTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATG ]
[+] EMBL AI977428 [ GACGCATCCGTCACCAGAATGTTTTAAGAGATATTTGTGACAATGTGATGAATGGAAATCAAATGAAATACATCTATCTTCCAGATGTGTATTCTAAACACCGTTTATCAATATGTGTGCAAGAATTAAGCAAATTCTGTTCAGCGATTCCAGCTGCACTTATTTTGCTGATTATAAGCTGGTCATACTATGTAGTTACTTTTGTTGTAATCCAAGATTTAATCACTAGCACATTTCTGTTGTTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTTTGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTTACTGCCAATGAAACATAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTCGTGAATAATTTGTCCGTTACATAACAGTTACCTTTACTTACTGTT GNGAAAAGATTCAA TGCCCAATTCT ]
[+] EMBL BF440121 [ atccgTCACCAGAATGTTT TAAGAGTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTTTGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTTACTGCCAATGAAACAAAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTCGTGAATAATTTGTCCGTTACAAAACAGTTACCTTTACTTACTGTG GGGAAAAGATTCAATTGCCCAATTCTGGTGATATATGCTTTCTTTTAAAGCC ]
[-] EMBL CD142238 [ TTACAAAACAGTTACCTTTAC TACTGTTNGGGAAAAGATTCAA TGCCCAATTCT GTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGTTACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGTTTTCTGTATTGTGTACTATGTTTTCTATTTGCTTTATCCTACATGCTAAAATACCTAAAGATTCGAACTACTAGTGTTGCTAATAATCGATCGTGGGATTTGTTTTGTGCATTTACTCTGTCGCTTTTATCGGCTGT ]
[-] EMBL CD073490 [ GTTTTCTGTATTGTGNACTATGTTTTCTATTTGCTTTATCCTACTTGCTAAAATACCTAAAGATTCGAACTACTAGTGTTGCTAATAATCGATCGTGGGATTTGTTTTGTGCATTTACTCTGTCGCTTTTATCGGCTGTGTTTGCAATGGCACTGTTAATCCTGCTCCTATTCCATACGTATTTAGTATTTAAAAATAAGTCTACGCTAGAATATTTTCGGCCCCCGAATTTTCGTGGTAACAGTCATCGTATATACGGTTTTAATCTTGGGTGGAAGAATAATTTTCTTCAAATATTTGGTAATAACATCAAGCATTGGCTGTTCCTGTATTTTTTAGTGAAGGAGATGGAGTCTCTTTCCAAATCCGAGAAATTCCAACTCATGAAGACTACTCCCTGTTGCTGTCGACTATTTAGTATTGACGAATGAGATCTATCTTTGTCACTTACATGTGTTCATACAATTCTGGCTGGATTTGTGATAATTTTCAAAAAAACTTTTGTCTACCTGTCATGTCAACTAGTTTTTCAAATAAATTAAATAT]
consensusID : consensus_8579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence
[GAATTCGGCACGAGGGTTACAAAACAGTTACCTTTACTTACTGTTGGGAAAAGATTCAATGCCCAATTCTGTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGTTACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGNTTTC]
[+] EMBL CD077505 [GAATTCGGCACGAGGGTTACAAAACAGTTACCTTTACTTACTGTTGGGAAAAGATTCAATGCCCAATTCTGTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGTTACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGNTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8579#0 ACGGGAACTGTCTGACGCATCCGTCACCAGAATGTTTTAAGAGATATTTGTGACAATGTG 60
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 ATGAATGGAAATCAAATGAAATACATCTATCTTCCAGATGTGTATTCTAAACACCGTTTA 120
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 TCAATATGTGTGCAAGAATTAAGCAAATTCTGTTCAGCGATTCCAGCTGCACTTATTTTG 180
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 CTGATTATAAGCTGGTCATACTATGTAGTTACTTTTGTTGTAATCCAAGATTTAATCACT 240
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 AGCACATTTCTATTGTTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTT 300
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 TGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTT 360
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 ACTGCCAATGAAACAAAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTC 420
consensus_8579#1 ------------------------------------------------------GAATTC 6
******
consensus_8579#0 GTGAATAATTTGTCCGTTACAAAACAGTTACCTTTACTTACTGTTGGGAAAAGATTCAAT 480
consensus_8579#1 GGCACGAG------GGTTACAAAACAGTTACCTTTACTTACTGTTGGGAAAAGATTCAAT 60
* * * *********************************************
consensus_8579#0 GCCCAATTCTGTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGT 540
consensus_8579#1 GCCCAATTCTGTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGT 120
************************************************************
consensus_8579#0 TGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGT 600
consensus_8579#1 TGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGT 180
************************************************************
consensus_8579#0 TACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGTTTTCTGTATTGTGTACTA 660
consensus_8579#1 TACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGNTTTC-------------- 226
***************************************** ****
consensus_8579#0 TGTTTTCTATTTGCTTTATCCTACATGCTAAAATACCTAAAGATTCGAACTACTAGTGTT 720
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 GCTAATAATCGATCGTGGGATTTGTTTTGTGCATTTACTCTGTCGCTTTTATCGGCTGTG 780
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 TTTGCAATGGCACTGTTAATCCTGCTCCTATTCCATACGTATTTAGTATTTAAAAATAAG 840
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 TCTACGCTAGAATATTTTCGGCCCCCGAATTTTCGTGGTAACAGTCATCGTATATACGGT 900
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 TTTAATCTTGGGTGGAAGAATAATTTTCTTCAAATATTTGGTAATAACATCAAGCATTGG 960
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 CTGTTCCTGTATTTTTTAGTGAAGGAGATGGAGTCTCTTTCCAAATCCGAGAAATTCCAA 1020
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 CTCATGAAGACTACTCCCTGTTGCTGTCGACTATTTAGTATTGACGAATGAGATCTATCT 1080
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 TTGTCACTTACATGTGTTCATACAATTCTGGCTGGATTTGTGATAATTTTCAAAAAAACT 1140
consensus_8579#1 ------------------------------------------------------------
consensus_8579#0 TTTGTCTACCTGTCATGTCAACTAGTTTTTCAAATAAATTAAATAT 1186
consensus_8579#1 ----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||