These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1128 fasta sequence [TGGCCTCGAGGCCAAGACTCGGCATGAGGCTTTATTTTATATCAGCTAGTCGAT-CGGTGATAGTGCGATTGTTCCAATGCCACGTAAAGGTCCAATCTATCAAATAGCTTTTCAACCAAC-AATTATTCATCTTCTATTACAAAAAAGAATAAAAATAATAAAATTGAAGAATATTTTGTTGTTTGTTATGGATTTACACCAGCATCTGTGACAATATTCAATTTGAACTGTGAACCAGTTCACGATTTTGGAACAGGTTCATGGAATGAAATTCATTTTAATCCTCATGGAAATCTATTGTTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCATGAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGTGAACACTTAATATTTGCTACAACAACTCCCAGATTACGTGTAAATAATGGCTTTGGAATATGGCATTATAGTGGTAAACAATTATCCTATCGACCCGTTGAACGACGTGCTGTTCCTAGAGCAGCTACACCAGATTTACCTGCTGCAGTTGACCATGAATTATATCAAGTTTCAGTTATATTTCCAACAAAACTGGAATCTGCTCCTGAACCGAAAAAGTTTGAATCTGCTAATGA-AAATTCGGTAAATAAGCGTGCTTCGGTTTACGTACCTCCAGTTCTTCGTAATCGTTCTGCAGTAGCTGTACAATCATTGAAGTCATCTAATATGATTGATCATGGTAAAATTTCTACTCACTCTGTTAACAATAATAATTCTAACATTGGAAAACTGAATCCAAGCAAAACTATTGGTTCAAATCATAAAACCACATTATCTTCTAATGAATCTGCCCTGACTGGTGGCACATATCCAGCTTCATTCAATAATGAATGTGCTCACCCAGTTGCATCAGACCCGAAGAACCAAAAGCAAGTAAATCAGATATAT-AAAAAACTGACGCAGATTGAGAAACTGAAAACAGAACAAGCATCCGGAAAATCTTTGGCATATAACCAACTGGACAAAATTGCGAGTGAAAAACAACTCCGGGATGAATTAGCTAAACTATGTGTATGAAGGACATGTTTAGTTTCTAATAAAATTTTT] [+] EMBL CD083378 [TGGCCTCGAGGCCAAGACTCGGCATGAGGCTTTATTTTATATCAGCTAGTCGAT CGGTGATAGTGCGATTGTTCCAATGCCACGTAAAGGTCCAATCTATCAAATAGCTTTTCAACCAAC AATTATTCATCTTCTATTACAAAAAAGAATAAAAATAATAAAATTGAAGAATATTTTGTTGTTTGTTATGGATTTACACCAGCATCTGTGACAATATTCAATTTGAACTGTGAACCAGTTCACGATTTTGGAACAGGTTCATGGAATGAAATTCATTTTAATCCTCATGGAAATCTATTGTTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCATGAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGTGAACACTTAATATTTGCTACAACAACTCCCAGATTACGTGTAAATA ] [+] EMBL CD079047 [ CGATCCGGTGATAGTGCGATTGTTCCAATGCCACGTAAAGGTCCAATCTATCAAATAGCTTTTCAACCAACAAATTATTCATCTTCTATTACAAAAAAGAATAAAAATAATAAAATTGAAGAATATTTTGTTGTTTGTTATGGATTTACACCAGCATCTGTGACAATATTCAATTTGAACTGTGAACCAGTTCACGATTTTGGAACAGGTTCATGGAATGAAATTCATTTTAATCCTCATGGAAATCTATTGTTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCATGAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGTGAACACTTAATATTTGCTACAACAACTCCAAGATTACGTGTAAATAATGGCTTTGGAATATGGCATTATAGTGGTAAACAATTATCCTATCGACCCGTTGAACGACGTGCTGTTCCTAGAGCAGCTACACCAGATTTACCTGCTGCAGTTGACCATGAATTATATCAAGTTTCAGTTATATTTCCAACANAACTGGAATCTGCTCCTGAACCGAANAAGTTTGAATCTGCTAATGANNAATTCG ] [-] EMBL CD145525 [ ATATCAAGTTTCAGTTATATTTCCAACAAAACTGGAATCTGCTCCTGAACCGAAAAAGTTTGAATCTGCTAATGA AAATTCGGTAAATAAGCGTGCTTCGGTTTACGTACCTCCAGTTCTTCGTAATCGTTCTGCAGTAGCTGTACAATCATTGAAGTCATCTAATATGATTGATCATGGTAAAATTTCTACTCACTCTGTTAACAATAATAATTCTAACATTGGAAAACTGAATCCAAGCAAAACTATTGGTTCAAATCATAAAACCACATTATCTTCTAATGAATCTGCCCTGACTGGTGGCACATATCCAGCTTCATTCAATAATGAATGTGCTCACCCAGTTGCATCAGAC ] [-] EMBL CD136786 [ CAACAAAACTGGAATCTGCTCCTGAACCGAAAAAGTTTGAATCTGCTAATGA AAATTCGGTAAATAAGCGTGCTTCGGTTTACGTACCTCCAGTTCTTCGTAATCGTTCTGCAGTAGCTGTACAATCATTGAAGTCATCTAATATGATTGATCATGGTAAAATTTCTACTCACTCTGTTAACAATAATAATTCTAACATTGGAAAACTGAATCCAAGCAAAACTATTGGTTCAAATCATAAAACCACATTATCTTCTAATGAATCTGCCCTGACTGGTGGCACATATCCAGCCTCATTCAATAATGAATGTGCTCACCCAGTTGCATCAGACCCGAAGAACCAAAAGCAAGTAAATCAGATATATAAAAAAACTGACGCAGATTGAGAAACTGAAAACAGAACAAGCATCCGGAAAATCTTTGGCATATAACCAACTGGACAAAATTGCGAGTGAAAAACAACTCCGGGATGAATTAGCTA ] [-] EMBL CD073499 [ AGTTTGAATCTGCTAATGA AAATTCGGTAAATAAGCGTGCTTCGGTTTACGTACCTCCAGTTCTTCGTAATCGTTCTGCAGTAGCTGTACAATCATTGAAGTCATCTAATATGATTGATCATGGTAAAATTTCTACTCACTCTGTTAACAATAATAATTCTAACATTGGAAAACTGAATCCAAGCAAAACTATTGGTTCAAATCATAAAACCACATTATCTTCTAATGAATCTGCCCTGACTGGTGGCACATATCCAGCTTCATTCAATAATGAATGTGCTCACCCAGTTGCATCAGACCCGAAGAACCAAAAGCAAGTAAATCAGATATAT AAAAAACTGACGCAGATTGAGAAAATGAAAACAGAACAAGCATCCGGAAAATCTTTGGCATATAACCAACTGGACAAAATTGCGAGTGAAAAACAACTCCGGGATGAATTAGCTAAACTATGTGTATGAAGGACATGTTTAGTTTCTAATAAAATTTTT] consensusID : consensus_8582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence [ATATCATTTGATTTAACCAAAATACCATGTTACTGTCGGTCTTTTACTCCCCGTATGATTGTTGAAAGAACCCAATTTAATAGAGTAAATTCAAATAGTAAGAAACAGTAATGAAAGTCTCTGCTTTCACCTTAACCGTTTCATTATTGATTTATTTTTCTTATAGTTTACTATTGTTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCATGAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGTGAACACTTAATATTTGCTACAACAACTCCAAGATTACGTGTAAATAATGGGTTAGTTGCTTTTTTTGTAGTATGTTTTTTATGCTCGAAGAATTCATCGATTCTTGATTGTATGAAATATCGAAAGTCGGAATAAAAGACGTTGCTTCATCAGACTGACTGACGTTAAGCTTCTAAGTCTTCAAGACTTATTTCCCTACTAGTTCCAATGTCGTTTTACACCACAGATCTTTTCGCCCTTTTTCATTCTTGTTATGGTTGTATTACCTCATTCACCAAATTAGGGATTTGCACTATCATAATAGACGTTCTACTTATTCATTATCTTGTCGAGATTCATATAAGTAACTTTTATCATTCCTTCTTGAGTGTAACCAATCAAGACGAGCATTACATGATTATCATCACTCCAATCTAT] [+] EMBL AI975811 [ATATCATTTGATTTAACCAAAATACCATGTTACTGTCGGTCTTTTACTCCCCGTATGATTGTTGAAAGAACCCAATTTAATAGAGTAAATTCAAATAGTAAGAAACAGTAATGAAAGTCTCTGCTTTCACCTTAACCGTTTCATTATTGATTTATTTTTCTTATAGTTTACTATTGTTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCATGAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGTGAACACTTAATATTTGCTACAACAACTCCAAGATTACGTGTAAATAATGGGTTAGTTGCTTTTTTTGTAGTATGTTTTTTATGCTCGAAGAATTCATCGATTCTTGATTGTATGAAATATCGAAAGTCGGAATAAAAGACGTTGCTTCATCAGACTGACTGACGTTAAGCTTCTAAGTCTTCAAGACTTATTTCCCTACTAGTTCC ] [-] EMBL CD132211 [ ATTGTATGAAATATCGAAAGTCGGAATAAAAGACGTTGCTTCATCAGACTGACTGACGTTAAGCTTCTAAGTCTTCAAGACTTATTTCCCTACTAGTTCCAATGTCGTTTTACACCACAGATCTTTTCGCCCTTTTTCATTCTTGTTATGGTTGTATTACCTCATTCACCAAATTAGGGATTTGCACTATCATAATAGACGTTCTACTTATTCATTATCTTGTCGAGATTCATATAAGTAACTTTTATCATTCCTTCTTGAGTGTAACCAATCAAGACGAGCATTACATGATTATCATCACTCCAATCTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8582#0 TGGCCTCGAGGCCAAGACTCGGCATGAGGCTTTATTTTATATCAGCTAGTCGATCGGTGA 60 consensus_8582#1 ------------------------------------------------------------ consensus_8582#0 TAGTGCGATTGTTCCAATGCCACGTAAAGGTCCAATCTATCAAATAGCTTTTCAACCAAC 120 consensus_8582#1 -----------------------ATATCATTTGATTTAACCAAAATACCATGTTACTGTC 37 ** * * * * **** * * ** * consensus_8582#0 AATTATTCATCTTCTATTACAAAAAAGAATAAAAATAATAAAATTGAAGAATATTTTGTT 180 consensus_8582#1 GGTCTTTTACTCCCCGT-----ATGATTGTTGAAAGAACCCAATTTAATAGAGTAAATTC 92 * ** * * * * * * *** ** **** ** * * * consensus_8582#0 GTTTGTTATGGATTTACACCAGCATCTGTGACAATATTCAATTTGAACTGTGAACCAGTT 240 consensus_8582#1 AAATAGTAAGAA---------ACAGTAATGAAAGTCTCTGCTTTCACCT--TAACCGTTT 141 * ** * * ** *** * * * *** * ** **** ** consensus_8582#0 CACGATTTTGGAACAGGTTCATGGAATGAAATTCATTTTAATCCTCATGGAAATCTATTG 300 consensus_8582#1 CATTATT----------------------GATTTATTTT---TCTTATAGTTTACTATTG 176 ** *** *** ***** ** ** * ****** consensus_8582#0 TTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCAT 360 consensus_8582#1 TTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCAT 236 ************************************************************ consensus_8582#0 GAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGT 420 consensus_8582#1 GAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGT 296 ************************************************************ consensus_8582#0 GAACACTTAATATTTGCTACAACAACTCCCAGATTACGTGTAAATAATGGCTTTGGAA-- 478 consensus_8582#1 GAACACTTAATATTTGCTACAACAACTCCAAGATTACGTGTAAATAATGGGTTAGTTGCT 356 ***************************** ******************** ** * consensus_8582#0 -----TATGGCATTATAGTGGTAAACAATTATCCTATCGACCCGTTGAACGACGTGCTGT 533 consensus_8582#1 TTTTTTGTAGTATGTTTTTTATGCTCGAAGAATTCATCGATTC-TTGATTG-TATGAAAT 414 * * * ** * * * * * * ***** * **** * ** * consensus_8582#0 TCCTAGAGCAGCTACACCAGATTTACCTGCTGCAGTTGACCATGAATTATATCAAGTTTC 593 consensus_8582#1 ATCGAAAGTCGGAATAAAAGACGT---TGCTTCATCAGAC--TGACTGACGTTAAGCTTC 469 * * ** * * * *** * **** ** *** *** * * * *** *** consensus_8582#0 AGTTATATTTCCAACAAAACTGGAATCTGCTCCTGAACCGAAAAAGTTTGAATCTGCTAA 653 consensus_8582#1 ---TAAGTCTTCAA---GACTTATTTCCCTACTAGTTCCAATGTCGTTTTACACCACAGA 523 ** * * *** *** ** * * ** * **** * * * * consensus_8582#0 TGAAAATTCGGTAAATAAG-CGTGCTTCGGTTTACGTACCTCCAGTTCTTCGTAATCGTT 712 consensus_8582#1 TCTTTTCGCCCTTTTTCATTCTTGTTATGGTTGTATTACCTC--ATTCACCAAATTAG-- 579 * * * * * * ** * **** ****** *** * * * * consensus_8582#0 CTGCAGTAGCTGTACAATCATTGAAGTCATCTAATATGATTGATCATGGTAAAATTTCTA 772 consensus_8582#1 -----GGATTTGCACTATCATAATAGACGTTC----TACTTATTCATTATCTTGTCGAGA 630 * * ** ** ***** ** * * * ** **** * * * consensus_8582#0 CTCACTCTGTTAACAATAATAATTCTAACATTGGAAAACTGAATCCAAGCAAA-ACTATT 831 consensus_8582#1 TTCATATAAGTAACTTTTATCATTCCTTCTTGAGTGTAACCAATCAAGACGAGCATTACA 690 *** **** * ** **** * * * * **** * * * * ** consensus_8582#0 GGTTCAAATCATAAAACCACATTATCTTCTAATGAATCTGCCCTGACTGGTGGCACATAT 891 consensus_8582#1 TGATTA--TCATCACTCCAATCTAT----------------------------------- 713 * * * **** * *** *** consensus_8582#0 CCAGCTTCATTCAATAATGAATGTGCTCACCCAGTTGCATCAGACCCGAAGAACCAAAAG 951 consensus_8582#1 ------------------------------------------------------------ consensus_8582#0 CAAGTAAATCAGATATATAAAAAACTGACGCAGATTGAGAAACTGAAAACAGAACAAGCA 1011 consensus_8582#1 ------------------------------------------------------------ consensus_8582#0 TCCGGAAAATCTTTGGCATATAACCAACTGGACAAAATTGCGAGTGAAAAACAACTCCGG 1071 consensus_8582#1 ------------------------------------------------------------ consensus_8582#0 GATGAATTAGCTAAACTATGTGTATGAAGGACATGTTTAGTTTCTAATAAAATTTTT 1128 consensus_8582#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||