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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1128 fasta sequence
[TGGCCTCGAGGCCAAGACTCGGCATGAGGCTTTATTTTATATCAGCTAGTCGAT-CGGTGATAGTGCGATTGTTCCAATGCCACGTAAAGGTCCAATCTATCAAATAGCTTTTCAACCAAC-AATTATTCATCTTCTATTACAAAAAAGAATAAAAATAATAAAATTGAAGAATATTTTGTTGTTTGTTATGGATTTACACCAGCATCTGTGACAATATTCAATTTGAACTGTGAACCAGTTCACGATTTTGGAACAGGTTCATGGAATGAAATTCATTTTAATCCTCATGGAAATCTATTGTTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCATGAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGTGAACACTTAATATTTGCTACAACAACTCCCAGATTACGTGTAAATAATGGCTTTGGAATATGGCATTATAGTGGTAAACAATTATCCTATCGACCCGTTGAACGACGTGCTGTTCCTAGAGCAGCTACACCAGATTTACCTGCTGCAGTTGACCATGAATTATATCAAGTTTCAGTTATATTTCCAACAAAACTGGAATCTGCTCCTGAACCGAAAAAGTTTGAATCTGCTAATGA-AAATTCGGTAAATAAGCGTGCTTCGGTTTACGTACCTCCAGTTCTTCGTAATCGTTCTGCAGTAGCTGTACAATCATTGAAGTCATCTAATATGATTGATCATGGTAAAATTTCTACTCACTCTGTTAACAATAATAATTCTAACATTGGAAAACTGAATCCAAGCAAAACTATTGGTTCAAATCATAAAACCACATTATCTTCTAATGAATCTGCCCTGACTGGTGGCACATATCCAGCTTCATTCAATAATGAATGTGCTCACCCAGTTGCATCAGACCCGAAGAACCAAAAGCAAGTAAATCAGATATAT-AAAAAACTGACGCAGATTGAGAAACTGAAAACAGAACAAGCATCCGGAAAATCTTTGGCATATAACCAACTGGACAAAATTGCGAGTGAAAAACAACTCCGGGATGAATTAGCTAAACTATGTGTATGAAGGACATGTTTAGTTTCTAATAAAATTTTT]
[+] EMBL CD083378 [TGGCCTCGAGGCCAAGACTCGGCATGAGGCTTTATTTTATATCAGCTAGTCGAT CGGTGATAGTGCGATTGTTCCAATGCCACGTAAAGGTCCAATCTATCAAATAGCTTTTCAACCAAC AATTATTCATCTTCTATTACAAAAAAGAATAAAAATAATAAAATTGAAGAATATTTTGTTGTTTGTTATGGATTTACACCAGCATCTGTGACAATATTCAATTTGAACTGTGAACCAGTTCACGATTTTGGAACAGGTTCATGGAATGAAATTCATTTTAATCCTCATGGAAATCTATTGTTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCATGAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGTGAACACTTAATATTTGCTACAACAACTCCCAGATTACGTGTAAATA ]
[+] EMBL CD079047 [ CGATCCGGTGATAGTGCGATTGTTCCAATGCCACGTAAAGGTCCAATCTATCAAATAGCTTTTCAACCAACAAATTATTCATCTTCTATTACAAAAAAGAATAAAAATAATAAAATTGAAGAATATTTTGTTGTTTGTTATGGATTTACACCAGCATCTGTGACAATATTCAATTTGAACTGTGAACCAGTTCACGATTTTGGAACAGGTTCATGGAATGAAATTCATTTTAATCCTCATGGAAATCTATTGTTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCATGAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGTGAACACTTAATATTTGCTACAACAACTCCAAGATTACGTGTAAATAATGGCTTTGGAATATGGCATTATAGTGGTAAACAATTATCCTATCGACCCGTTGAACGACGTGCTGTTCCTAGAGCAGCTACACCAGATTTACCTGCTGCAGTTGACCATGAATTATATCAAGTTTCAGTTATATTTCCAACANAACTGGAATCTGCTCCTGAACCGAANAAGTTTGAATCTGCTAATGANNAATTCG ]
[-] EMBL CD145525 [ ATATCAAGTTTCAGTTATATTTCCAACAAAACTGGAATCTGCTCCTGAACCGAAAAAGTTTGAATCTGCTAATGA AAATTCGGTAAATAAGCGTGCTTCGGTTTACGTACCTCCAGTTCTTCGTAATCGTTCTGCAGTAGCTGTACAATCATTGAAGTCATCTAATATGATTGATCATGGTAAAATTTCTACTCACTCTGTTAACAATAATAATTCTAACATTGGAAAACTGAATCCAAGCAAAACTATTGGTTCAAATCATAAAACCACATTATCTTCTAATGAATCTGCCCTGACTGGTGGCACATATCCAGCTTCATTCAATAATGAATGTGCTCACCCAGTTGCATCAGAC ]
[-] EMBL CD136786 [ CAACAAAACTGGAATCTGCTCCTGAACCGAAAAAGTTTGAATCTGCTAATGA AAATTCGGTAAATAAGCGTGCTTCGGTTTACGTACCTCCAGTTCTTCGTAATCGTTCTGCAGTAGCTGTACAATCATTGAAGTCATCTAATATGATTGATCATGGTAAAATTTCTACTCACTCTGTTAACAATAATAATTCTAACATTGGAAAACTGAATCCAAGCAAAACTATTGGTTCAAATCATAAAACCACATTATCTTCTAATGAATCTGCCCTGACTGGTGGCACATATCCAGCCTCATTCAATAATGAATGTGCTCACCCAGTTGCATCAGACCCGAAGAACCAAAAGCAAGTAAATCAGATATATAAAAAAACTGACGCAGATTGAGAAACTGAAAACAGAACAAGCATCCGGAAAATCTTTGGCATATAACCAACTGGACAAAATTGCGAGTGAAAAACAACTCCGGGATGAATTAGCTA ]
[-] EMBL CD073499 [ AGTTTGAATCTGCTAATGA AAATTCGGTAAATAAGCGTGCTTCGGTTTACGTACCTCCAGTTCTTCGTAATCGTTCTGCAGTAGCTGTACAATCATTGAAGTCATCTAATATGATTGATCATGGTAAAATTTCTACTCACTCTGTTAACAATAATAATTCTAACATTGGAAAACTGAATCCAAGCAAAACTATTGGTTCAAATCATAAAACCACATTATCTTCTAATGAATCTGCCCTGACTGGTGGCACATATCCAGCTTCATTCAATAATGAATGTGCTCACCCAGTTGCATCAGACCCGAAGAACCAAAAGCAAGTAAATCAGATATAT AAAAAACTGACGCAGATTGAGAAAATGAAAACAGAACAAGCATCCGGAAAATCTTTGGCATATAACCAACTGGACAAAATTGCGAGTGAAAAACAACTCCGGGATGAATTAGCTAAACTATGTGTATGAAGGACATGTTTAGTTTCTAATAAAATTTTT]
consensusID : consensus_8582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence
[ATATCATTTGATTTAACCAAAATACCATGTTACTGTCGGTCTTTTACTCCCCGTATGATTGTTGAAAGAACCCAATTTAATAGAGTAAATTCAAATAGTAAGAAACAGTAATGAAAGTCTCTGCTTTCACCTTAACCGTTTCATTATTGATTTATTTTTCTTATAGTTTACTATTGTTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCATGAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGTGAACACTTAATATTTGCTACAACAACTCCAAGATTACGTGTAAATAATGGGTTAGTTGCTTTTTTTGTAGTATGTTTTTTATGCTCGAAGAATTCATCGATTCTTGATTGTATGAAATATCGAAAGTCGGAATAAAAGACGTTGCTTCATCAGACTGACTGACGTTAAGCTTCTAAGTCTTCAAGACTTATTTCCCTACTAGTTCCAATGTCGTTTTACACCACAGATCTTTTCGCCCTTTTTCATTCTTGTTATGGTTGTATTACCTCATTCACCAAATTAGGGATTTGCACTATCATAATAGACGTTCTACTTATTCATTATCTTGTCGAGATTCATATAAGTAACTTTTATCATTCCTTCTTGAGTGTAACCAATCAAGACGAGCATTACATGATTATCATCACTCCAATCTAT]
[+] EMBL AI975811 [ATATCATTTGATTTAACCAAAATACCATGTTACTGTCGGTCTTTTACTCCCCGTATGATTGTTGAAAGAACCCAATTTAATAGAGTAAATTCAAATAGTAAGAAACAGTAATGAAAGTCTCTGCTTTCACCTTAACCGTTTCATTATTGATTTATTTTTCTTATAGTTTACTATTGTTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCATGAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGTGAACACTTAATATTTGCTACAACAACTCCAAGATTACGTGTAAATAATGGGTTAGTTGCTTTTTTTGTAGTATGTTTTTTATGCTCGAAGAATTCATCGATTCTTGATTGTATGAAATATCGAAAGTCGGAATAAAAGACGTTGCTTCATCAGACTGACTGACGTTAAGCTTCTAAGTCTTCAAGACTTATTTCCCTACTAGTTCC ]
[-] EMBL CD132211 [ ATTGTATGAAATATCGAAAGTCGGAATAAAAGACGTTGCTTCATCAGACTGACTGACGTTAAGCTTCTAAGTCTTCAAGACTTATTTCCCTACTAGTTCCAATGTCGTTTTACACCACAGATCTTTTCGCCCTTTTTCATTCTTGTTATGGTTGTATTACCTCATTCACCAAATTAGGGATTTGCACTATCATAATAGACGTTCTACTTATTCATTATCTTGTCGAGATTCATATAAGTAACTTTTATCATTCCTTCTTGAGTGTAACCAATCAAGACGAGCATTACATGATTATCATCACTCCAATCTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8582#0 TGGCCTCGAGGCCAAGACTCGGCATGAGGCTTTATTTTATATCAGCTAGTCGATCGGTGA 60
consensus_8582#1 ------------------------------------------------------------
consensus_8582#0 TAGTGCGATTGTTCCAATGCCACGTAAAGGTCCAATCTATCAAATAGCTTTTCAACCAAC 120
consensus_8582#1 -----------------------ATATCATTTGATTTAACCAAAATACCATGTTACTGTC 37
** * * * * **** * * ** *
consensus_8582#0 AATTATTCATCTTCTATTACAAAAAAGAATAAAAATAATAAAATTGAAGAATATTTTGTT 180
consensus_8582#1 GGTCTTTTACTCCCCGT-----ATGATTGTTGAAAGAACCCAATTTAATAGAGTAAATTC 92
* ** * * * * * * *** ** **** ** * * *
consensus_8582#0 GTTTGTTATGGATTTACACCAGCATCTGTGACAATATTCAATTTGAACTGTGAACCAGTT 240
consensus_8582#1 AAATAGTAAGAA---------ACAGTAATGAAAGTCTCTGCTTTCACCT--TAACCGTTT 141
* ** * * ** *** * * * *** * ** **** **
consensus_8582#0 CACGATTTTGGAACAGGTTCATGGAATGAAATTCATTTTAATCCTCATGGAAATCTATTG 300
consensus_8582#1 CATTATT----------------------GATTTATTTT---TCTTATAGTTTACTATTG 176
** *** *** ***** ** ** * ******
consensus_8582#0 TTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCAT 360
consensus_8582#1 TTATTAGCTGGGTTAGGTAATTTGTCAGGCGATATGTGTGTTTGGGATTTTTCAACTCAT 236
************************************************************
consensus_8582#0 GAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGT 420
consensus_8582#1 GAACGTTTATCTTCATTTAAAACAACTGATGTGACAAGTGTTCAGTGGTTACCAGATGGT 296
************************************************************
consensus_8582#0 GAACACTTAATATTTGCTACAACAACTCCCAGATTACGTGTAAATAATGGCTTTGGAA-- 478
consensus_8582#1 GAACACTTAATATTTGCTACAACAACTCCAAGATTACGTGTAAATAATGGGTTAGTTGCT 356
***************************** ******************** ** *
consensus_8582#0 -----TATGGCATTATAGTGGTAAACAATTATCCTATCGACCCGTTGAACGACGTGCTGT 533
consensus_8582#1 TTTTTTGTAGTATGTTTTTTATGCTCGAAGAATTCATCGATTC-TTGATTG-TATGAAAT 414
* * * ** * * * * * * ***** * **** * ** *
consensus_8582#0 TCCTAGAGCAGCTACACCAGATTTACCTGCTGCAGTTGACCATGAATTATATCAAGTTTC 593
consensus_8582#1 ATCGAAAGTCGGAATAAAAGACGT---TGCTTCATCAGAC--TGACTGACGTTAAGCTTC 469
* * ** * * * *** * **** ** *** *** * * * *** ***
consensus_8582#0 AGTTATATTTCCAACAAAACTGGAATCTGCTCCTGAACCGAAAAAGTTTGAATCTGCTAA 653
consensus_8582#1 ---TAAGTCTTCAA---GACTTATTTCCCTACTAGTTCCAATGTCGTTTTACACCACAGA 523
** * * *** *** ** * * ** * **** * * * *
consensus_8582#0 TGAAAATTCGGTAAATAAG-CGTGCTTCGGTTTACGTACCTCCAGTTCTTCGTAATCGTT 712
consensus_8582#1 TCTTTTCGCCCTTTTTCATTCTTGTTATGGTTGTATTACCTC--ATTCACCAAATTAG-- 579
* * * * * * ** * **** ****** *** * * * *
consensus_8582#0 CTGCAGTAGCTGTACAATCATTGAAGTCATCTAATATGATTGATCATGGTAAAATTTCTA 772
consensus_8582#1 -----GGATTTGCACTATCATAATAGACGTTC----TACTTATTCATTATCTTGTCGAGA 630
* * ** ** ***** ** * * * ** **** * * *
consensus_8582#0 CTCACTCTGTTAACAATAATAATTCTAACATTGGAAAACTGAATCCAAGCAAA-ACTATT 831
consensus_8582#1 TTCATATAAGTAACTTTTATCATTCCTTCTTGAGTGTAACCAATCAAGACGAGCATTACA 690
*** **** * ** **** * * * * **** * * * * **
consensus_8582#0 GGTTCAAATCATAAAACCACATTATCTTCTAATGAATCTGCCCTGACTGGTGGCACATAT 891
consensus_8582#1 TGATTA--TCATCACTCCAATCTAT----------------------------------- 713
* * * **** * *** ***
consensus_8582#0 CCAGCTTCATTCAATAATGAATGTGCTCACCCAGTTGCATCAGACCCGAAGAACCAAAAG 951
consensus_8582#1 ------------------------------------------------------------
consensus_8582#0 CAAGTAAATCAGATATATAAAAAACTGACGCAGATTGAGAAACTGAAAACAGAACAAGCA 1011
consensus_8582#1 ------------------------------------------------------------
consensus_8582#0 TCCGGAAAATCTTTGGCATATAACCAACTGGACAAAATTGCGAGTGAAAAACAACTCCGG 1071
consensus_8582#1 ------------------------------------------------------------
consensus_8582#0 GATGAATTAGCTAAACTATGTGTATGAAGGACATGTTTAGTTTCTAATAAAATTTTT 1128
consensus_8582#1 ---------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||