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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 965 fasta sequence
[GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTTATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATAGAGTTGCTGTTGGTGTTGTCGACGATATGAATTATGCCGTTGGTGGTTCAACCAATACAATGCATCATAAAAGCTCTGAAAAATATGATCCAGATATGGATCAATGGATACCGATAGCTTCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCTGTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAGGATCATTGGGAAGAGTTAGCTTGTTTAAATCGAGCTAGATCCGGTGCAAGTGTTGTTGCACTTGGTGAATACATTTATGNCATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAATGGAACGTTATGATCCTAAACGAAATTGTTGGGAATATTGTGCATCTATGCTACATCCAAGATCAGCA]
[+] EMBL CD154040 [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTTATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATAGAGTTGCTGTTGGTGTTGTCGACGATATGAATTATGCCGTTGGTGGTTCAACCAATACA ]
[+] EMBL CD154194 [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTTATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTANTAGANTTGCTGTT ]
[-] EMBL CD185785 [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACCTCCTCATACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATGTCATTTACAAAATATTGTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGTTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGA ]
[+] EMBL CD201541 [ GGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATAGAGTTGCTGTTGGTGTTGTCGACGATATGATTTATGCCGTTGGTGGTTCAACCAATACAATGCATCATAAAAGCTCTGAAAAATATGATCCAGATATGGATCAATGGATACCGATAGCTTCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCTGTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAGGATCATTGGGAAGAGTTAGCTTGTTTAAATCGAGCTAGATCCGGTGCAAGTGTTGTTGCACTTGGTGAATACATTTATGNCATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAATGGAACG ]
[+] EMBL CD097921 [ GATACCGATAGCTTCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCTGTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAGGATCATTGGGAAGAGTTAGCTTGCTTAAATCGAGCTAGATCCGGTGCAGGTGTTGTTGCACTTGGTGAATACATTTATGCAATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAATGGAACGTTATGATCCTAAACGAAATTGTTGGGAATATTGTGCATCTATGCTACATCCAAGATCAGCA]
consensusID : consensus_8584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence
[TTGTGCATCTATGCTACATCCAAGATCAGCATTAAGTGCTTCAGTATGGGGAAATGAAATATGGGTTTTTGGTGGCTACGATGGAAGTGAATTTCTAGCCAGTGTTGAAGTTTATAATCCAATTAAAGATCAATGGACTGAACGAACGTTTATGGATTGTGGTAAATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGACAATGTAAACTATTTTGTTTTTACCAAAAAACAAGATATATTTCCTCATTTAAATTGAAATGTATAGAGAAAACAAACGAGCAGGAGATAGAGAGAGAAGATCGTTCAAGCTCTCTGTGATTTCACCCA-TTTTTTGTCTGTTTCTGTTTATTAGCGCCAATATATAACCATCAACCTTTCAATTTTCTCCCTCCTCGTCCTTACTCCTTCTAGTCTCTATTACGCTTACCAAATATTGTAATTACAGCAACAATCGTAGTAATAGTTAAAGTCATTAGAAATCTTACTCTGAAAAATACTAAAACAGTGCTAACCAACTATGTTTTATA]
[-] EMBL CD178707 [TTGTGCATCTATGCTACATCCAAGATCAGCATTAAGTGCTTCAGTATGGGGAAATGAAATATGGGTTTTTGGTGGCTACGATGGAAGTGAATTTCTAGCCAGTGTTGAAGTTTATAATCCAATTAAAGATCAATGGACTGAACGAACGTTTATGGATTGTGGTAAATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGACAATGTAAACTATTTTGTTTTTACCAAAAAACAAGATATATTTCCTCATTTAAATTGAAATGTATAGAGAAAACAAACGAGCAGGAGATAGAGAGAGAAGATCGTTCAAGCTCTCTGTGATTTCACCCA TTTTTTGTCTGTTTCTGTTTATTAGCGCCAATATATAACCATCAACCTTTCAATTTTCTCCCTCCTC ]
[+] EMBL CD179120 [ CTGAACGAACGTTTATGGATTGTGGTAAATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGACAATGTAAACTATTTTGTTTTTACCAAAAAACAAGATATATTTCCTCATTTAAATTGAAATGTATAGAGAAAACAAACGAGCAGGAGATAGAGAGAGAAGATCGTTCAAGCTCTCTGTGATTTCACCCACTTTTTTGTCTGTTTCTGTTTATTAGCGCCAATATATAACCATCAACCTTTCAATTTTCTCCCTCCTCGTCCTTACTCCTTCTAGTCTCTATTACGCTTACCAAATATTGTAATTACAGCAACAATCGTAGTAATAGTTAAAGTCATTAGAAATCTTACTCTGAAAAATACTAAAACAGTGCTAACCAACTATGTTTTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8584#0 GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAA 60
consensus_8584#1 ------------------------------------------------------------
consensus_8584#0 ATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCT 120
consensus_8584#1 ------------------------------------------------------------
consensus_8584#0 ATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTT 180
consensus_8584#1 ------------------------------------------------------------
consensus_8584#0 TCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATA 240
consensus_8584#1 ------------------------------------------------------------
consensus_8584#0 TCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATC 300
consensus_8584#1 ------------------------------------------------------------
consensus_8584#0 TGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTC 360
consensus_8584#1 ------------------------------------------------------------
consensus_8584#0 TACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTT 420
consensus_8584#1 ----TTGTGCATCTATGCTACATCCAAG---ATCAGCATTAAGTGCTTCAGTATGGGGAA 53
* * *** * ** * * ** ** * ** * *** *
consensus_8584#0 ATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATT 480
consensus_8584#1 ATGAAATATGGGTTTTTGGTGGCTACGA---TGGAAGTGAATTTCTAGCCAGTGTTGAAG 110
** ** * * * * * ** **** * * * * * * **
consensus_8584#0 GTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATA 540
consensus_8584#1 TTTATAATCCAATTAAAGATCAATGGACTGAACGAAC------GTTTATGGATTGTGGTA 164
**** ****** *** ** ****** * * * ** ** * ** **
consensus_8584#0 GAGTTGCTGTTGGTGTTGTCGACGAT-ATGAATTATGCCGTTGGTGGTTCAACCAATACA 599
consensus_8584#1 AATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGA-----CAATGTA 219
* ** ** ***** * * ** * ** *** * * **** *
consensus_8584#0 ATGCATCATAAAAGCTCTGAAAAATATGATCCAGATATGGATCAATGGATACCGATAGCT 659
consensus_8584#1 AACTATTTTGTTTTTACCAAAAAACAAGAT----ATATTTCCTCATTTAAATTGA-AATG 274
* ** * * ***** * *** **** ** * * ** *
consensus_8584#0 TCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCT 719
consensus_8584#1 TATAGAGAAAACAAACGAGCAGGAG-----ATAGAGAGAGAAGATCGTTCA-----AGCT 324
* ** * * **** *** * * * **** * * ***
consensus_8584#0 GTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAG 779
consensus_8584#1 CTCTGTGATTTCACCCAT------TTTTTGTCTGTTTCTGTTTATTA-GCGCCAATATAT 377
* *** *** * **** * ** *** * ** * *
consensus_8584#0 GATCATTGGGAAGAGTTAGCTTGTTTAAATCGAGCTAGATCCGGTGCAAGTGT-TGTTGC 838
consensus_8584#1 AACCATC--AACCTTTCAATTTTCTCCCTCCTCGTCCTTACTCCTTCTAGTCTCTATTAC 435
* *** * * * ** * * * * * * *** * * ** *
consensus_8584#0 ACTTGGTGAATACATTTATGNCATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAAT 898
consensus_8584#1 GCTTACCAAATATTGTAATTACAGCA------ACAATCGTAGTAAT-AGTTAAAGTCATT 488
*** **** * ** ** * ** * *** * ******* ** *
consensus_8584#0 GGAACGTTATGATCCTAAACGAAATTGTTGGGAATATTGTGCATCTATGCTACATCCAAG 958
consensus_8584#1 AGAA--ATCTTACTCTGAAAAATACTAA-AACAGTGCTAACCAACTATGTTTTATA---- 541
*** * * * ** ** * * * * * * ** ***** * **
consensus_8584#0 ATCAGCA 965
consensus_8584#1 -------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||