These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 748 fasta sequence [TATTTATCAAGATTTGGTTAGTCTTATGATTTCTGGTCAAACATATGCCACAACAGAACCATTCATTGATGCCAATTGTGATCTTCATGTACAAAAAATCGGTACTAATTATAAAGCATTCATGCGTAAGGCTATTTCCGGTAATTGGAAATCGAATACTGGATCAGCATTATTGGAAAAAGTCCCAATGAATGACAAATTTAAACTATGGATTGATGAAGTGTCTCGTTTATTTGGAGGTTTGGATATCTGTTCTATTGATGCG-TAC-AATCAAGGAGCGGTGAATATTTTATTTATGAGGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAACATATTCTTCATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGTATTGGTATAGGAAGTGCAACACCTCTTGCTCAGCCTAGTATTGGACCCAGTGCAGTACACCCTGCATTTAATCCACCATCTCAGCAGCTTTCATCACAACCTTACTCACAAGTACATCAGTCGCAACCAGCAAATGCTCAACAAATTCCCCAATCAACCCAAAAATACCCACCCGTAACAGGAGTTACGTCAAATACCAGTTCACTTATCGGTGAACAATTGGATCGGTAAGTCCTGCACTGAGTAAGCATTCTGACTCCGNTTCGTCACAAGTTTT] [-] EMBL CD187300 [TATTTATCAAGATTTGGTTAGTCTTATGATTTCTGGTCAAACATATGCCACAACAGAACCATTCATTGATGCCAATTGTGATCTTCATGTACAAAAAATCGGTACTAATTATAAAGCATTCATGCGTAAGGCTATTTCCGGTAATTGGAAATCGAATACTGGATCAGCATTATTGGAAAAAGTCCCAATGAATGACAAATTTAAACTATGGATTGATGAAGTGTCTCGTTTATTTGGAGGTTTGGATATCTGTTCTATTGATGCGTTAC AATCAAGGAGCGGTGAATATTTTATTTATGAGGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAA ] [-] EMBL CD111952 [ TATGNATGCG TACAAATCAAGGAGCGGTGAATATTTTATTTATGAGGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAACATATTCTTCATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGTATTGGTATAGGAAGTGCAACACCTCTTGCTCAGCCTAGTATTGGACCCAGTGCAGTACACCCTGCATTT ] [+] EMBL CD134375 [ AATATTTTATTTATGAGGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAACATATTCTTCATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGTATTGGTAT GGAAGTG AACACCTCTTGCTCAGCCTAGTATTGGACCCAGTGCAGCACACCCTGCATTTAATCCACCATCTCAGCAGCTTTCATCACAACCTTACTCACAAGTACATCAGTCGCAACCAGCAAATGCTCAACAAATTCCCCAATCAACCCAAAAATACCCACCCGTAACAGGAGTTACGTCAAATACCAGTTCACTTATCGGTGAACAATTGGATCGGTAAGTCCTGCACTGAGTAAGCATTCTGACTCCGNTTCGTCACAAGTTTT] [+] EMBL CD134334 [ AATATCGTATTTATGAGGCTAACGGTTCAGACATGACCCTATATGGAGATAGTCAAGAAAGTGATATGACAGAAATTGCTGAACTATTGATGCAACGTATGCAGTCTATAAC ] consensusID : consensus_8589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [TGGAGATAACCTGATCAAGGATGATATAACAATAAACTGTGTAGGTGAAATGAATTTAAGGGCGTATAAAAGAATTATGGAAAGTAAAACTGCCCCTGGACCTTATACTGCAGCTGAAGTTGAGGTGGCTGGCATCCACTCAGGAGAAGTGACAACTGGGCTGCATTCCAACTATCAAACAATCGGTGGTGTTTCATTCGCGCTTAGTCCTGATTCTCGCTCCGAGTTGAAGAATTTTAGTTCGGGAAAGTGTGATTACGTCCAATTATTTTTATTCATACAATTTCTGGCAATCAAAGCCCAATAAAAAGTCGAATGTTGTATTCTAGTTGCAAGGCAGCTTTACTAACTCGGTTGGAACGTGAATTTGAAATAACCTTTGATCATAGACTTGAAATTGATGAAATCGATGAACTAACTACACAATATTTAATGGATATTTTATATCCTAAACAAGAAGAAAAACAG] [+] EMBL AI976955 [TGGAGATAACCTGATCAAGGATGATATAACAATAAACTGTGTAGGTGAAATGAATTTAAGGGCGTATAAAAGAATTATGGAAAGTAAAACTGCCCCTGGACCTTATACTGCAGCTGAAGTTGAGGTGGCTGGCATCCACTCAGGAGAAGTGACAACTGGGCTGCATTCCAACTATCAAACAATCGGTGGTGTTTCATTCGCGCTTAGTCCTGATTCTCGCTCCGAGTTGAAGAATTTTAGTTCGGGAAAGTGTGATTACGTCCAATTATTTTTATTCATACAATTTCTGGCAATCAAAGCCCAATAAAAAGTCGAATGTTGTATTCTAGTTGCAAGGCAGCTTTACTAACTCGGTTGGAACGTGAATTTGAAATAACCTTTGATCATAGACTTGAAATTGATGAAATCGATGAACTAACTACACAATATTTAATGGATATTTTATATCCTAAACAAGAAGAAAAACAG] consensusID : consensus_8589#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [AATATTTTAGGTATGATGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAGCATATCCTTCATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGACATGGGACTTTATATTGAGCTTCGATTGCCAGAAATTGTATGAATAAAAAACGTAGCAGAATGTTCTTCACCTTTAAACATATGACGGAAACGAAAAAGATGATAACGACCTTCTTTTTCTGGACAAATTTCTGCTATTTGTTTTGGCGTAATATGTTCACGAGTCCCACAAACTTTGATAGTTTCACTAAGAATATCACACTTCGAATCCATTCTATTTGTTGAGAACCAACGAATGGGTTTTT] [+] EMBL CD134320 [AATATTTTAGGTATGATGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAGCATATCCTTCATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGACATGGGACTTTATATTGAGCTTCGATTGCCAGAAATTGTATGAATAAAAAACGTAGCAGAATGTTCTTCACCTTTAAACATATGACGGAAACGAAAAAGATGATAACGACCTTCTTTTTCTGGACAAATTTCTGCTATTTGTTTTGGCGTAATATGTTCACGAGTCCCACAAACTTTGATAGTTTCACTAAGAATATCACACTTCGAATCCATTCTATTTGTTGAGAACCAACGAATGGGTTTTT] consensusID : consensus_8589#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [ACGACGTCCCATAGGACCTTGGGGTTTTTGGAATATAAACTGTTTTTCTTCTTGTTTAGGATATAAAATATCCATTAAATATTGTGTAGTTAGTTCATCGATTTCATCAATTTCAAGTCTATGATCAAAGGTTATTTCAAATTCACGTTCCAACCGAGTTAGTAAAGCTGCCTTGCAACTAGAATACAACATTCGACTTTTTATTGGGCTTTGATTGCCAGAAATTGTATGAATAAAAAACGTAGCACAATGTTCT] [+] EMBL CD134317 [ACGACGTCCCATAGGACCTTGGGGTTTTTGGAATATAAACTGTTTTTCTTCTTGTTTAGGATATAAAATATCCATTAAATATTGTGTAGTTAGTTCATCGATTTCATCAATTTCAAGTCTATGATCAAAGGTTATTTCAAATTCACGTTCCAACCGAGTTAGTAAAGCTGCCTTGCAACTAGAATACAACATTCGACTTTTTATTGGGCTTTGATTGCCAGAAATTGTATGAATAAAAAACGTAGCACAATGTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8589#1 ------------------------------------------------------------ consensus_8589#3 ------------------------------------------------------------ consensus_8589#0 TATTTATCAAGATTTGGTTAGTCTTATGATTTCTGGTCAAACATATGCCACAACAGAACC 60 consensus_8589#2 ------------------------------------------------------------ consensus_8589#1 ------------------------------------------------------------ consensus_8589#3 ------------------------------------------------------------ consensus_8589#0 ATTCATTGATGCCAATTGTGATCTTCATGTACAAAAAATCGGTACTAATTATAAAGCATT 120 consensus_8589#2 ------------------------------------------------------------ consensus_8589#1 ------------------------------------------------------------ consensus_8589#3 ------------------------------------------------------------ consensus_8589#0 CATGCGTAAGGCTATTTCCGGTAATTGGAAATCGAATACTGGATCAGCATTATTGGAAAA 180 consensus_8589#2 ------------------------------------------------------------ consensus_8589#1 ------------------------------------------------------------ consensus_8589#3 ------------------------------------------------------------ consensus_8589#0 AGTCCCAATGAATGACAAATTTAAACTATGGATTGATGAAGTGTCTCGTTTATTTGGAGG 240 consensus_8589#2 ------------------------------------------------------------ consensus_8589#1 -----------------------------------------TGGAGATAACCTGATCAAG 19 consensus_8589#3 ------------------------------------------------------------ consensus_8589#0 TTTGGATATCTGTTCTATTGATGCGTACAATCAAGGAGCGGTGAATATTTTATTTATGAG 300 consensus_8589#2 -------------------------------------------AATATTTTAGGTATGAT 17 consensus_8589#1 GATGATATAACAATAAACTGTGTAGGTGAAATGAATTTAAGGGCGTATAAAAGAATTATG 79 consensus_8589#3 ------------------------------------------------------------ consensus_8589#0 GCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATT 360 consensus_8589#2 GCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATT 77 consensus_8589#1 GAAAGTAAAACTGCCCCTGGACCTTATACTGCAGCTGAAGTTGAGGTGGCTGGCATCCAC 139 consensus_8589#3 ------------------------------------------------------------ consensus_8589#0 GCTGAACTAGTGATGCAACGTATGCAGTCTATAACATATTCTTCATCTATTCCTAAGGTT 420 consensus_8589#2 GCTGAACTAGTGATGCAACGTATGCAGTCTATAGCATATCCTTCATCTATTCCTAAGGTT 137 consensus_8589#1 TCAGGAGAAGTGACAACTGG-GCTGCATTCCAACTATCAAACAATCGGTGGTGTTTCATT 198 consensus_8589#3 ---------------------ACGACGTCCCAT------AGGACCTTGGGGTTTTTGGAA 33 consensus_8589#0 CCAAGTCTACAAACAATCGGTAGAACAAGCGAAACA--GAAAGACCAGTAGGTATTGGTA 478 consensus_8589#2 CCAAGTCTACAAACAATCGGTAGAACAAGCGAAACA--GAAAGACCAGTAGGACATGGGA 195 * * * * * * * consensus_8589#1 CGCGCTTAGTCCTGATTCTCGCTCCGAGTTGAAGAATTTTA--GTTCGGGAAAGTGTGAT 256 consensus_8589#3 TATAAACTGTTTTTCTTCTTGTTTAGGATATAA-AATATCC--ATTAAATATTGTGTAGT 90 consensus_8589#0 TAGGAAGTGCAACACCTCTTGCTCAGCCTAGTATTGG------ACCCAGTGCAGTACACC 532 consensus_8589#2 CTTTATATTGAGCTTCGATTGCCAGAAATTGTATGAATAAAAAACGTAGCAGAATGTTCT 255 * * * * * consensus_8589#1 TACGTCCAATTATTTTTATTCATACAATTTCTGGCAATCAAAGCCCAATAAAAAGTCGAA 316 consensus_8589#3 TAGTTC--ATCGATTTCATCAATTTCAAGTCTA-TGATCAAAGGTTATTTCAAATTC--A 145 consensus_8589#0 CTGCATTTAATCC----ACCATCTCAGCAGCTTTCATCACAACCTTACTCACAAGTACAT 588 consensus_8589#2 TCACCTTTAAACATATGACGGAAACGAAAAAGATGATAACGACCTTCTTTTTCTGGACAA 315 * * * * consensus_8589#1 TGTTG---TATTCTAGTT-GCAAGGCAGCTTTACTAACTCGGTTGGAACGT--GAATTTG 370 consensus_8589#3 CGTTC---CAACCGAGTTAGTAAAGCTGCCTTGC-AACTAGAATACAACATTCGACTTTT 201 consensus_8589#0 CAGTC-GCAACCAGCAAATGCTCAACAAATTCCCCAATCAACCCAAAAATACCCACCCGT 647 consensus_8589#2 ATTTCTGCTATTTGTTTTGGCGTAATATGTTCACGAGTCC-CACAAACTTTGATAGTTTC 374 * * * * * * * * consensus_8589#1 AAATAACCTTTGATCATAGACTTGAAATTGATGAAATCGATGAACTAACTACACAATATT 430 consensus_8589#3 TATTGGGCTTTGATTG----CCAGAAATTGTATGAATAAAAAACGTAGC---ACAATGTT 254 consensus_8589#0 AACAGGAGT----TACGTCAAATACCAGTTCACTTATCGGTGAACAATTGGATCGGTAAG 703 consensus_8589#2 ACTAAGAATATCACACTTCGAAT-CCATTCTATTTGTTGA-GAACCAACGAATGGGTTTT 432 * * * * * * * consensus_8589#1 TAATGGATATTTTATATCCTAAACAAGAAGAAAAACAG------- 468 consensus_8589#3 CT------------------------------------------- 256 consensus_8589#0 TCCTGCACTGAGTAAGCATTCTGACTCCGNTTCGTCACAAGTTTT 748 consensus_8589#2 T-------------------------------------------- 433 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||