cluster # 8589

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Schistosoma mansoni
cluster # 8589 cluster # 8589 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8589#0 length = 748 sequences # 4
consensus_8589#1 length = 468 sequences # 1

consensus_8589#2 length = 433 sequences # 1
consensus_8589#3 length = 256 sequences # 1

consensusID : consensus_8589#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 748
fasta sequence

                              [TATTTATCAAGATTTGGTTAGTCTTATGATTTCTGGTCAAACATATGCCACAACAGAACCATTCATTGATGCCAATTGTGATCTTCATGTACAAAAAATCGGTACTAATTATAAAGCATTCATGCGTAAGGCTATTTCCGGTAATTGGAAATCGAATACTGGATCAGCATTATTGGAAAAAGTCCCAATGAATGACAAATTTAAACTATGGATTGATGAAGTGTCTCGTTTATTTGGAGGTTTGGATATCTGTTCTATTGATGCG-TAC-AATCAAGGAGCGGTGAATATTTTATTTATGAGGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAACATATTCTTCATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGTATTGGTATAGGAAGTGCAACACCTCTTGCTCAGCCTAGTATTGGACCCAGTGCAGTACACCCTGCATTTAATCCACCATCTCAGCAGCTTTCATCACAACCTTACTCACAAGTACATCAGTCGCAACCAGCAAATGCTCAACAAATTCCCCAATCAACCCAAAAATACCCACCCGTAACAGGAGTTACGTCAAATACCAGTTCACTTATCGGTGAACAATTGGATCGGTAAGTCCTGCACTGAGTAAGCATTCTGACTCCGNTTCGTCACAAGTTTT]

[-] EMBL CD187300             [TATTTATCAAGATTTGGTTAGTCTTATGATTTCTGGTCAAACATATGCCACAACAGAACCATTCATTGATGCCAATTGTGATCTTCATGTACAAAAAATCGGTACTAATTATAAAGCATTCATGCGTAAGGCTATTTCCGGTAATTGGAAATCGAATACTGGATCAGCATTATTGGAAAAAGTCCCAATGAATGACAAATTTAAACTATGGATTGATGAAGTGTCTCGTTTATTTGGAGGTTTGGATATCTGTTCTATTGATGCGTTAC AATCAAGGAGCGGTGAATATTTTATTTATGAGGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAA                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD111952             [                                                                                                                                                                                                                                                               TATGNATGCG TACAAATCAAGGAGCGGTGAATATTTTATTTATGAGGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAACATATTCTTCATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGTATTGGTATAGGAAGTGCAACACCTCTTGCTCAGCCTAGTATTGGACCCAGTGCAGTACACCCTGCATTT                                                                                                                                                                                                                ]
[+] EMBL CD134375             [                                                                                                                                                                                                                                                                                             AATATTTTATTTATGAGGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAACATATTCTTCATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGTATTGGTAT GGAAGTG AACACCTCTTGCTCAGCCTAGTATTGGACCCAGTGCAGCACACCCTGCATTTAATCCACCATCTCAGCAGCTTTCATCACAACCTTACTCACAAGTACATCAGTCGCAACCAGCAAATGCTCAACAAATTCCCCAATCAACCCAAAAATACCCACCCGTAACAGGAGTTACGTCAAATACCAGTTCACTTATCGGTGAACAATTGGATCGGTAAGTCCTGCACTGAGTAAGCATTCTGACTCCGNTTCGTCACAAGTTTT]
[+] EMBL CD134334             [                                                                                                                                                                                                                                                                                             AATATCGTATTTATGAGGCTAACGGTTCAGACATGACCCTATATGGAGATAGTCAAGAAAGTGATATGACAGAAATTGCTGAACTATTGATGCAACGTATGCAGTCTATAAC                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_8589#0
TATTTATCAAGATTTGGTTAGTCTTATGATTTCTGGTCAAACATATGCCACAACAGAACC
ATTCATTGATGCCAATTGTGATCTTCATGTACAAAAAATCGGTACTAATTATAAAGCATT
CATGCGTAAGGCTATTTCCGGTAATTGGAAATCGAATACTGGATCAGCATTATTGGAAAA
AGTCCCAATGAATGACAAATTTAAACTATGGATTGATGAAGTGTCTCGTTTATTTGGAGG
TTTGGATATCTGTTCTATTGATGCGTACAATCAAGGAGCGGTGAATATTTTATTTATGAG
GCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATT
GCTGAACTAGTGATGCAACGTATGCAGTCTATAACATATTCTTCATCTATTCCTAAGGTT
CCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGTATTGGTATA
GGAAGTGCAACACCTCTTGCTCAGCCTAGTATTGGACCCAGTGCAGTACACCCTGCATTT
AATCCACCATCTCAGCAGCTTTCATCACAACCTTACTCACAAGTACATCAGTCGCAACCA
GCAAATGCTCAACAAATTCCCCAATCAACCCAAAAATACCCACCCGTAACAGGAGTTACG
TCAAATACCAGTTCACTTATCGGTGAACAATTGGATCGGTAAGTCCTGCACTGAGTAAGC
ATTCTGACTCCGNTTCGTCACAAGTTTT

consensusID : consensus_8589#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [TGGAGATAACCTGATCAAGGATGATATAACAATAAACTGTGTAGGTGAAATGAATTTAAGGGCGTATAAAAGAATTATGGAAAGTAAAACTGCCCCTGGACCTTATACTGCAGCTGAAGTTGAGGTGGCTGGCATCCACTCAGGAGAAGTGACAACTGGGCTGCATTCCAACTATCAAACAATCGGTGGTGTTTCATTCGCGCTTAGTCCTGATTCTCGCTCCGAGTTGAAGAATTTTAGTTCGGGAAAGTGTGATTACGTCCAATTATTTTTATTCATACAATTTCTGGCAATCAAAGCCCAATAAAAAGTCGAATGTTGTATTCTAGTTGCAAGGCAGCTTTACTAACTCGGTTGGAACGTGAATTTGAAATAACCTTTGATCATAGACTTGAAATTGATGAAATCGATGAACTAACTACACAATATTTAATGGATATTTTATATCCTAAACAAGAAGAAAAACAG]

[+] EMBL AI976955             [TGGAGATAACCTGATCAAGGATGATATAACAATAAACTGTGTAGGTGAAATGAATTTAAGGGCGTATAAAAGAATTATGGAAAGTAAAACTGCCCCTGGACCTTATACTGCAGCTGAAGTTGAGGTGGCTGGCATCCACTCAGGAGAAGTGACAACTGGGCTGCATTCCAACTATCAAACAATCGGTGGTGTTTCATTCGCGCTTAGTCCTGATTCTCGCTCCGAGTTGAAGAATTTTAGTTCGGGAAAGTGTGATTACGTCCAATTATTTTTATTCATACAATTTCTGGCAATCAAAGCCCAATAAAAAGTCGAATGTTGTATTCTAGTTGCAAGGCAGCTTTACTAACTCGGTTGGAACGTGAATTTGAAATAACCTTTGATCATAGACTTGAAATTGATGAAATCGATGAACTAACTACACAATATTTAATGGATATTTTATATCCTAAACAAGAAGAAAAACAG]




>consensus_8589#1
TGGAGATAACCTGATCAAGGATGATATAACAATAAACTGTGTAGGTGAAATGAATTTAAG
GGCGTATAAAAGAATTATGGAAAGTAAAACTGCCCCTGGACCTTATACTGCAGCTGAAGT
TGAGGTGGCTGGCATCCACTCAGGAGAAGTGACAACTGGGCTGCATTCCAACTATCAAAC
AATCGGTGGTGTTTCATTCGCGCTTAGTCCTGATTCTCGCTCCGAGTTGAAGAATTTTAG
TTCGGGAAAGTGTGATTACGTCCAATTATTTTTATTCATACAATTTCTGGCAATCAAAGC
CCAATAAAAAGTCGAATGTTGTATTCTAGTTGCAAGGCAGCTTTACTAACTCGGTTGGAA
CGTGAATTTGAAATAACCTTTGATCATAGACTTGAAATTGATGAAATCGATGAACTAACT
ACACAATATTTAATGGATATTTTATATCCTAAACAAGAAGAAAAACAG

consensusID : consensus_8589#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [AATATTTTAGGTATGATGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAGCATATCCTTCATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGACATGGGACTTTATATTGAGCTTCGATTGCCAGAAATTGTATGAATAAAAAACGTAGCAGAATGTTCTTCACCTTTAAACATATGACGGAAACGAAAAAGATGATAACGACCTTCTTTTTCTGGACAAATTTCTGCTATTTGTTTTGGCGTAATATGTTCACGAGTCCCACAAACTTTGATAGTTTCACTAAGAATATCACACTTCGAATCCATTCTATTTGTTGAGAACCAACGAATGGGTTTTT]

[+] EMBL CD134320             [AATATTTTAGGTATGATGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAGCATATCCTTCATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGACCAGTAGGACATGGGACTTTATATTGAGCTTCGATTGCCAGAAATTGTATGAATAAAAAACGTAGCAGAATGTTCTTCACCTTTAAACATATGACGGAAACGAAAAAGATGATAACGACCTTCTTTTTCTGGACAAATTTCTGCTATTTGTTTTGGCGTAATATGTTCACGAGTCCCACAAACTTTGATAGTTTCACTAAGAATATCACACTTCGAATCCATTCTATTTGTTGAGAACCAACGAATGGGTTTTT]




>consensus_8589#2
AATATTTTAGGTATGATGCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAA
GTGATAGGACAGAAATTGCTGAACTAGTGATGCAACGTATGCAGTCTATAGCATATCCTT
CATCTATTCCTAAGGTTCCAAGTCTACAAACAATCGGTAGAACAAGCGAAACAGAAAGAC
CAGTAGGACATGGGACTTTATATTGAGCTTCGATTGCCAGAAATTGTATGAATAAAAAAC
GTAGCAGAATGTTCTTCACCTTTAAACATATGACGGAAACGAAAAAGATGATAACGACCT
TCTTTTTCTGGACAAATTTCTGCTATTTGTTTTGGCGTAATATGTTCACGAGTCCCACAA
ACTTTGATAGTTTCACTAAGAATATCACACTTCGAATCCATTCTATTTGTTGAGAACCAA
CGAATGGGTTTTT

consensusID : consensus_8589#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [ACGACGTCCCATAGGACCTTGGGGTTTTTGGAATATAAACTGTTTTTCTTCTTGTTTAGGATATAAAATATCCATTAAATATTGTGTAGTTAGTTCATCGATTTCATCAATTTCAAGTCTATGATCAAAGGTTATTTCAAATTCACGTTCCAACCGAGTTAGTAAAGCTGCCTTGCAACTAGAATACAACATTCGACTTTTTATTGGGCTTTGATTGCCAGAAATTGTATGAATAAAAAACGTAGCACAATGTTCT]

[+] EMBL CD134317             [ACGACGTCCCATAGGACCTTGGGGTTTTTGGAATATAAACTGTTTTTCTTCTTGTTTAGGATATAAAATATCCATTAAATATTGTGTAGTTAGTTCATCGATTTCATCAATTTCAAGTCTATGATCAAAGGTTATTTCAAATTCACGTTCCAACCGAGTTAGTAAAGCTGCCTTGCAACTAGAATACAACATTCGACTTTTTATTGGGCTTTGATTGCCAGAAATTGTATGAATAAAAAACGTAGCACAATGTTCT]




>consensus_8589#3
ACGACGTCCCATAGGACCTTGGGGTTTTTGGAATATAAACTGTTTTTCTTCTTGTTTAGG
ATATAAAATATCCATTAAATATTGTGTAGTTAGTTCATCGATTTCATCAATTTCAAGTCT
ATGATCAAAGGTTATTTCAAATTCACGTTCCAACCGAGTTAGTAAAGCTGCCTTGCAACT
AGAATACAACATTCGACTTTTTATTGGGCTTTGATTGCCAGAAATTGTATGAATAAAAAA
CGTAGCACAATGTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8589#1      ------------------------------------------------------------
consensus_8589#3      ------------------------------------------------------------
consensus_8589#0      TATTTATCAAGATTTGGTTAGTCTTATGATTTCTGGTCAAACATATGCCACAACAGAACC 60
consensus_8589#2      ------------------------------------------------------------
                                                                                  

consensus_8589#1      ------------------------------------------------------------
consensus_8589#3      ------------------------------------------------------------
consensus_8589#0      ATTCATTGATGCCAATTGTGATCTTCATGTACAAAAAATCGGTACTAATTATAAAGCATT 120
consensus_8589#2      ------------------------------------------------------------
                                                                                  

consensus_8589#1      ------------------------------------------------------------
consensus_8589#3      ------------------------------------------------------------
consensus_8589#0      CATGCGTAAGGCTATTTCCGGTAATTGGAAATCGAATACTGGATCAGCATTATTGGAAAA 180
consensus_8589#2      ------------------------------------------------------------
                                                                                  

consensus_8589#1      ------------------------------------------------------------
consensus_8589#3      ------------------------------------------------------------
consensus_8589#0      AGTCCCAATGAATGACAAATTTAAACTATGGATTGATGAAGTGTCTCGTTTATTTGGAGG 240
consensus_8589#2      ------------------------------------------------------------
                                                                                  

consensus_8589#1      -----------------------------------------TGGAGATAACCTGATCAAG 19
consensus_8589#3      ------------------------------------------------------------
consensus_8589#0      TTTGGATATCTGTTCTATTGATGCGTACAATCAAGGAGCGGTGAATATTTTATTTATGAG 300
consensus_8589#2      -------------------------------------------AATATTTTAGGTATGAT 17
                                                                                  

consensus_8589#1      GATGATATAACAATAAACTGTGTAGGTGAAATGAATTTAAGGGCGTATAAAAGAATTATG 79
consensus_8589#3      ------------------------------------------------------------
consensus_8589#0      GCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATT 360
consensus_8589#2      GCTAACGGTTCAGACATGACCCTCTATGGAGATAGTCAAGAAAGTGATAGGACAGAAATT 77
                                                                                  

consensus_8589#1      GAAAGTAAAACTGCCCCTGGACCTTATACTGCAGCTGAAGTTGAGGTGGCTGGCATCCAC 139
consensus_8589#3      ------------------------------------------------------------
consensus_8589#0      GCTGAACTAGTGATGCAACGTATGCAGTCTATAACATATTCTTCATCTATTCCTAAGGTT 420
consensus_8589#2      GCTGAACTAGTGATGCAACGTATGCAGTCTATAGCATATCCTTCATCTATTCCTAAGGTT 137
                                                                                  

consensus_8589#1      TCAGGAGAAGTGACAACTGG-GCTGCATTCCAACTATCAAACAATCGGTGGTGTTTCATT 198
consensus_8589#3      ---------------------ACGACGTCCCAT------AGGACCTTGGGGTTTTTGGAA 33
consensus_8589#0      CCAAGTCTACAAACAATCGGTAGAACAAGCGAAACA--GAAAGACCAGTAGGTATTGGTA 478
consensus_8589#2      CCAAGTCTACAAACAATCGGTAGAACAAGCGAAACA--GAAAGACCAGTAGGACATGGGA 195
                                               *   * *       *       *  *    *    

consensus_8589#1      CGCGCTTAGTCCTGATTCTCGCTCCGAGTTGAAGAATTTTA--GTTCGGGAAAGTGTGAT 256
consensus_8589#3      TATAAACTGTTTTTCTTCTTGTTTAGGATATAA-AATATCC--ATTAAATATTGTGTAGT 90
consensus_8589#0      TAGGAAGTGCAACACCTCTTGCTCAGCCTAGTATTGG------ACCCAGTGCAGTACACC 532
consensus_8589#2      CTTTATATTGAGCTTCGATTGCCAGAAATTGTATGAATAAAAAACGTAGCAGAATGTTCT 255
                                        * *       *   *                     *     

consensus_8589#1      TACGTCCAATTATTTTTATTCATACAATTTCTGGCAATCAAAGCCCAATAAAAAGTCGAA 316
consensus_8589#3      TAGTTC--ATCGATTTCATCAATTTCAAGTCTA-TGATCAAAGGTTATTTCAAATTC--A 145
consensus_8589#0      CTGCATTTAATCC----ACCATCTCAGCAGCTTTCATCACAACCTTACTCACAAGTACAT 588
consensus_8589#2      TCACCTTTAAACATATGACGGAAACGAAAAAGATGATAACGACCTTCTTTTTCTGGACAA 315
                              *        *                       *      *           

consensus_8589#1      TGTTG---TATTCTAGTT-GCAAGGCAGCTTTACTAACTCGGTTGGAACGT--GAATTTG 370
consensus_8589#3      CGTTC---CAACCGAGTTAGTAAAGCTGCCTTGC-AACTAGAATACAACATTCGACTTTT 201
consensus_8589#0      CAGTC-GCAACCAGCAAATGCTCAACAAATTCCCCAATCAACCCAAAAATACCCACCCGT 647
consensus_8589#2      ATTTCTGCTATTTGTTTTGGCGTAATATGTTCACGAGTCC-CACAAACTTTGATAGTTTC 374
                         *     *         *          *  * *          *       *     

consensus_8589#1      AAATAACCTTTGATCATAGACTTGAAATTGATGAAATCGATGAACTAACTACACAATATT 430
consensus_8589#3      TATTGGGCTTTGATTG----CCAGAAATTGTATGAATAAAAAACGTAGC---ACAATGTT 254
consensus_8589#0      AACAGGAGT----TACGTCAAATACCAGTTCACTTATCGGTGAACAATTGGATCGGTAAG 703
consensus_8589#2      ACTAAGAATATCACACTTCGAAT-CCATTCTATTTGTTGA-GAACCAACGAATGGGTTTT 432
                              *                 * *       *     *   *         *   

consensus_8589#1      TAATGGATATTTTATATCCTAAACAAGAAGAAAAACAG------- 468
consensus_8589#3      CT------------------------------------------- 256
consensus_8589#0      TCCTGCACTGAGTAAGCATTCTGACTCCGNTTCGTCACAAGTTTT 748
consensus_8589#2      T-------------------------------------------- 433