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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 951 fasta sequence
[AACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTTGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGAGGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTCAGGAAGGGTACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCATCGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCTGCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGTAAATGAATTACCACTAAAGAGAACGACGAANAGCGA]
[-] EMBL CD094599 [AACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTTGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTG ]
[+] EMBL CD179886 [ CCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGAC ]
[+] EMBL CD179924 [ CCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTG ]
[-] EMBL CD094440 [ GGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTG ]
[+] EMBL CD124203 [ TAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATCTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGAGGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTCAGGAAGGGTACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCATCGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCTGCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGTAAATGAATTACCACTAAAGAGAACGACGAANAGCGA]
[-] EMBL CD084002 [ ACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGAGGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTCAGGAAGGATACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCATCGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCTGCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGTAAATGAATTACCACTAAAGAGAACGACGAAAAGCGA]
consensusID : consensus_8590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[GTGACCAGATTTCTGCCAAGCTTTCGCATCTATTCGTTCTCTTGAATCCAACTCCGCTAACAAACGTGAATTATTTAACGATTCTTTGAACCCTGCGATGAAACCACGTTTCTTTTCGATCACTGGAGGAGGTTTTCGAACAGAAGGGAGGTTTAAATAAGAACGAACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTCGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTCTGCATCAACTTGTTTGATACTTTTCTCCTTTACACCTGCCTCCGT]
[+] EMBL CD178146 [GTGACCAGATTTCTGCCAAGCTTTCGCATCTATTCGTTCTCTTGAATCCAACTCCGCTAACAAACGTGAATTATTTAACGATTCTTTGAACCCTGCGATGAAACCACGTTTCTTTTCGATCACTGGAGGAGGTTTTCGAACAGAAGGGAGGTTTAAATAAGAACGAACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTCGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTCTGCATCAACTTGTTTGATACTTTTCTCCTTTACACCTGCCTCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8590#0 ------------------------------------------------------------
consensus_8590#1 GTGACCAGATTTCTGCCAAGCTTTCGCATCTATTCGTTCTCTTGAATCCAACTCCGCTAA 60
consensus_8590#0 ------------------------------------------------------------
consensus_8590#1 CAAACGTGAATTATTTAACGATTCTTTGAACCCTGCGATGAAACCACGTTTCTTTTCGAT 120
consensus_8590#0 ---------------------------------------------AACAAGTCGTTGACG 15
consensus_8590#1 CACTGGAGGAGGTTTTCGAACAGAAGGGAGGTTTAAATAAGAACGAACAAGTCGTTGACG 180
***************
consensus_8590#0 CAGAATTACTGATTGTAAAAGGGAAACTAAGTTGCTAACAGTCCAATACCATACCAAAGC 75
consensus_8590#1 CAGAATTACTGATTGTAAAAGGGAAACTAAGTCGCTAACAGTCCAATACCATACCAAAGC 240
******************************** ***************************
consensus_8590#0 CGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACG 135
consensus_8590#1 CGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACG 300
************************************************************
consensus_8590#0 AATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAG 195
consensus_8590#1 AATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAG 360
************************************************************
consensus_8590#0 TAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAA 255
consensus_8590#1 TAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAA 420
************************************************************
consensus_8590#0 CCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCC 315
consensus_8590#1 CCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCC 480
************************************************************
consensus_8590#0 TGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGG 375
consensus_8590#1 TGTGAAAACACCAAGGAAAATTGGGGCTTCTGCATCAACTTGTTT---GATACTTTTCTC 537
***************************** * ** * *** * ** *
consensus_8590#0 ATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAAC 435
consensus_8590#1 CTTTACACCTGCCTCCGT------------------------------------------ 555
** * * * * *
consensus_8590#0 ATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTAT 495
consensus_8590#1 ------------------------------------------------------------
consensus_8590#0 AATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACAT 555
consensus_8590#1 ------------------------------------------------------------
consensus_8590#0 ACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATG 615
consensus_8590#1 ------------------------------------------------------------
consensus_8590#0 TAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGA 675
consensus_8590#1 ------------------------------------------------------------
consensus_8590#0 GGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTC 735
consensus_8590#1 ------------------------------------------------------------
consensus_8590#0 AGGAAGGGTACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCAT 795
consensus_8590#1 ------------------------------------------------------------
consensus_8590#0 CGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCT 855
consensus_8590#1 ------------------------------------------------------------
consensus_8590#0 GCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGT 915
consensus_8590#1 ------------------------------------------------------------
consensus_8590#0 AAATGAATTACCACTAAAGAGAACGACGAANAGCGA 951
consensus_8590#1 ------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||