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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 799 fasta sequence
[GTATCGATAAGAAATAGGTTTTTGTCAATCCGTACACGCTGAGACTGACGTGTTAGACCAGGAATATTACCGCTGATGCACACCTTTTGCCTTTTAAGTGTATTTATGAGTGCGCTTTTGCCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGAACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGGTTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAATTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACGTCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTTGCTTCTTCTAGCTTCATTTTTGCTTCGGCAACATCCTTCAGAANACTTTCTTTGAAGGGTANAAATG-TANGGACACCAGGATCCTTTCGGTGTC-GTTTAAAGTCTTNCTANNCTCCTTTACGT-ACTTGCNGNGATGCTCTNTAACCTTTCTGATAATNTTGAATCGCTTGTGACAGGTTAC]
[+] EMBL CD154959 [GTATCGATAAGAAATAGGTTTTTGTCAATCCGTACACGCTGAGACTGACGTGTTAGACCAGGAATATTACCGCTGATGCACACCTTTTGCCTTTTAAGTGTATTTATGAGTGCGCTTTTGCCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGAACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGGTTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAATTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCA ]
[-] EMBL CD195827 [ TCCGTACACGCTGAGACTGACGTGTTAGACCAGGAACATTACCGCTGATGCACACCTTTTGCCTTTTAAGTGTATTTATGAGTGCGCTTTTGCCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGA ]
[+] EMBL CD151627 [ GGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGAACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGGTTACTCTGACGTTGCGTATTTGCCTCGAATGTTATGACCGTGTGAGTTTTGCGTAGATAATTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCATGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACGTCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTTGCTTCTTCTAGCTTCATTTTTGCTTCGGCAACATCCTTCAGAANACTTTCTTTGAAGGGTANAAATG TANGGACACCAGGATCCTTTCGGTGTC GTTTAAAGTCTTNCTANNCTCCTTTACGT ACTTGCNGNGATGCTCTNTAACCTTTCTGATAATNTTGA ]
[-] EMBL CD184775 [ GTGAGTTTTGCGTAGATAATTGACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACGTCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTTGCTTCTTC AGCTTC ]
[-] EMBL CD155026 [ GAACAAGGTCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACGTCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTTGCTTCTTCTAGCTTCATTTTTGCTTCGGCAACATCCTTCAGAAAACTTTCTTTGAAGGGTA GAATGTTAGGGACACCAGGATCCTTTCGGTGTCGGTTTAAGTTCTT CTTAGCTTCCTTACGTAACTTGCGGTGATGCTCTTTAACCTTCTTGATAATTTTGTATCGCTTGTGACAGGTTAC]
consensusID : consensus_8595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 578 fasta sequence
[TGAGTGCGCTTTTGCCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGAACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGGTTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAATTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCTAAAACGGTTACCTAGATAACACTTACCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACATCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTCGCTTCTTCTAGCTTCATTTTTGCTTCGGCACATCCTTC]
[+] EMBL CD136729 [TGAGTGCGCTTTTGCCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGAACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGGTTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAATTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCTAAAACGGTTACCTAGATAACACTTACCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACATCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTCGCTTCTTCTAGCTTCATTTTTGCTTCGGCACATCCTTC]
[-] EMBL CD195724 [ CCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8595#0 GTATCGATAAGAAATAGGTTTTTGTCAATCCGTACACGCTGAGACTGACGTGTTAGACCA 60
consensus_8595#1 ------------------------------------------------------------
consensus_8595#0 GGAATATTACCGCTGATGCACACCTTTTGCCTTTTAAGTGTATTTATGAGTGCGCTTTTG 120
consensus_8595#1 ----------------------------------------------TGAGTGCGCTTTTG 14
**************
consensus_8595#0 CCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGAT 180
consensus_8595#1 CCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGAT 74
************************************************************
consensus_8595#0 AGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCG 240
consensus_8595#1 AGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCG 134
************************************************************
consensus_8595#0 AACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGG 300
consensus_8595#1 AACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGG 194
************************************************************
consensus_8595#0 TTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAA 360
consensus_8595#1 TTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAA 254
************************************************************
consensus_8595#0 TTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTC---------------------- 398
consensus_8595#1 TTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCTAAAACGGTTACCTAGATAACA 314
**************************************
consensus_8595#0 ------AATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTC 452
consensus_8595#1 CTTACCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTC 374
******************************************************
consensus_8595#0 TATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACGTC 512
consensus_8595#1 TATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACATC 434
********************************************************* **
consensus_8595#0 AGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATG 572
consensus_8595#1 AGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATG 494
************************************************************
consensus_8595#0 TTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTTGCTTCTTCTAGCTT 632
consensus_8595#1 TTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTCGCTTCTTCTAGCTT 554
********************************************* **************
consensus_8595#0 CATTTTTGCTTCGGCAACATCCTTCAGAANACTTTCTTTGAAGGGTANAAATGTANGGAC 692
consensus_8595#1 CATTTTTGCTTCGGCA-CATCCTTC----------------------------------- 578
**************** ********
consensus_8595#0 ACCAGGATCCTTTCGGTGTCGTTTAAAGTCTTNCTANNCTCCTTTACGTACTTGCNGNGA 752
consensus_8595#1 ------------------------------------------------------------
consensus_8595#0 TGCTCTNTAACCTTTCTGATAATNTTGAATCGCTTGTGACAGGTTAC 799
consensus_8595#1 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||