These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 799 fasta sequence [GTATCGATAAGAAATAGGTTTTTGTCAATCCGTACACGCTGAGACTGACGTGTTAGACCAGGAATATTACCGCTGATGCACACCTTTTGCCTTTTAAGTGTATTTATGAGTGCGCTTTTGCCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGAACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGGTTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAATTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACGTCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTTGCTTCTTCTAGCTTCATTTTTGCTTCGGCAACATCCTTCAGAANACTTTCTTTGAAGGGTANAAATG-TANGGACACCAGGATCCTTTCGGTGTC-GTTTAAAGTCTTNCTANNCTCCTTTACGT-ACTTGCNGNGATGCTCTNTAACCTTTCTGATAATNTTGAATCGCTTGTGACAGGTTAC] [+] EMBL CD154959 [GTATCGATAAGAAATAGGTTTTTGTCAATCCGTACACGCTGAGACTGACGTGTTAGACCAGGAATATTACCGCTGATGCACACCTTTTGCCTTTTAAGTGTATTTATGAGTGCGCTTTTGCCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGAACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGGTTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAATTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCA ] [-] EMBL CD195827 [ TCCGTACACGCTGAGACTGACGTGTTAGACCAGGAACATTACCGCTGATGCACACCTTTTGCCTTTTAAGTGTATTTATGAGTGCGCTTTTGCCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGA ] [+] EMBL CD151627 [ GGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGAACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGGTTACTCTGACGTTGCGTATTTGCCTCGAATGTTATGACCGTGTGAGTTTTGCGTAGATAATTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCATGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACGTCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTTGCTTCTTCTAGCTTCATTTTTGCTTCGGCAACATCCTTCAGAANACTTTCTTTGAAGGGTANAAATG TANGGACACCAGGATCCTTTCGGTGTC GTTTAAAGTCTTNCTANNCTCCTTTACGT ACTTGCNGNGATGCTCTNTAACCTTTCTGATAATNTTGA ] [-] EMBL CD184775 [ GTGAGTTTTGCGTAGATAATTGACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACGTCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTTGCTTCTTC AGCTTC ] [-] EMBL CD155026 [ GAACAAGGTCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACGTCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTTGCTTCTTCTAGCTTCATTTTTGCTTCGGCAACATCCTTCAGAAAACTTTCTTTGAAGGGTA GAATGTTAGGGACACCAGGATCCTTTCGGTGTCGGTTTAAGTTCTT CTTAGCTTCCTTACGTAACTTGCGGTGATGCTCTTTAACCTTCTTGATAATTTTGTATCGCTTGTGACAGGTTAC] consensusID : consensus_8595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 578 fasta sequence [TGAGTGCGCTTTTGCCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGAACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGGTTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAATTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCTAAAACGGTTACCTAGATAACACTTACCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACATCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTCGCTTCTTCTAGCTTCATTTTTGCTTCGGCACATCCTTC] [+] EMBL CD136729 [TGAGTGCGCTTTTGCCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGAACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGGTTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAATTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCTAAAACGGTTACCTAGATAACACTTACCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTCTATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACATCAGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATGTTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTCGCTTCTTCTAGCTTCATTTTTGCTTCGGCACATCCTTC] [-] EMBL CD195724 [ CCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGATAGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8595#0 GTATCGATAAGAAATAGGTTTTTGTCAATCCGTACACGCTGAGACTGACGTGTTAGACCA 60 consensus_8595#1 ------------------------------------------------------------ consensus_8595#0 GGAATATTACCGCTGATGCACACCTTTTGCCTTTTAAGTGTATTTATGAGTGCGCTTTTG 120 consensus_8595#1 ----------------------------------------------TGAGTGCGCTTTTG 14 ************** consensus_8595#0 CCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGAT 180 consensus_8595#1 CCAGTATTCGGAAGGCCGACAACACCAACAGTCAAGCTAAGACGAGCGTTAGTGTTAGAT 74 ************************************************************ consensus_8595#0 AGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCG 240 consensus_8595#1 AGACTGGAGCTTGGATCACGGGAGTAGTTTGCAAGCAAAGACAATAATTCAGAAGTTCCG 134 ************************************************************ consensus_8595#0 AACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGG 300 consensus_8595#1 AACCCTTTAGTTGGCATTTTTCCATCTTTGAGAAGGTATGGTTTTCCATATGACAGATGG 194 ************************************************************ consensus_8595#0 TTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAA 360 consensus_8595#1 TTACTCTGACGTTGCGTATTTGCCTTGAATGTTATGACCGTGTGAGTTTTGCGTAGATAA 254 ************************************************************ consensus_8595#0 TTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTC---------------------- 398 consensus_8595#1 TTTACCCAAGCCTCGAGATTGGATCGCGGAACAAGGTCTAAAACGGTTACCTAGATAACA 314 ************************************** consensus_8595#0 ------AATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTC 452 consensus_8595#1 CTTACCAATCTTATTGATGAGCAGGACCAAACGTTTATTCTCCCCAAGAACAATTTCTTC 374 ****************************************************** consensus_8595#0 TATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACGTC 512 consensus_8595#1 TATCTCTGGACAGCGTGTACCCATTGGATCTCGTGCATCCAATACTTCCAATATAACATC 434 ********************************************************* ** consensus_8595#0 AGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATG 572 consensus_8595#1 AGACTGGTTTATAACATCTTTAACATCGTGCTGAACTATAGAATGAGCCACATCTTCATG 494 ************************************************************ consensus_8595#0 TTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTTGCTTCTTCTAGCTT 632 consensus_8595#1 TTTCTGAGACTTATAAGTTTGCGAATACTCTATATTTTTAAGTCTCGCTTCTTCTAGCTT 554 ********************************************* ************** consensus_8595#0 CATTTTTGCTTCGGCAACATCCTTCAGAANACTTTCTTTGAAGGGTANAAATGTANGGAC 692 consensus_8595#1 CATTTTTGCTTCGGCA-CATCCTTC----------------------------------- 578 **************** ******** consensus_8595#0 ACCAGGATCCTTTCGGTGTCGTTTAAAGTCTTNCTANNCTCCTTTACGTACTTGCNGNGA 752 consensus_8595#1 ------------------------------------------------------------ consensus_8595#0 TGCTCTNTAACCTTTCTGATAATNTTGAATCGCTTGTGACAGGTTAC 799 consensus_8595#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||