cluster # 8597

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8597 cluster # 8597 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8597#0 length = 902 sequences # 4

consensus_8597#1 length = 532 sequences # 3

consensusID : consensus_8597#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 902
fasta sequence

                              [GTACTGGGATCAATCGTAAAAACACAATATTTTCGAAAATCTTTACGGAAAATAAAATCCTTCTCACGAATAGCATTCACCTCATCAACAGACTTACGAACTGATTCAATGACAATATCAGGAA-AC-TGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCACGAGGTATGAAGACTCGTGGTAGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAATTAGACAGAGCCGGATCTGTACGCATAGGTTCTGTTTGGTTATTATTCTGATCACCTTTCGGAGATAC-TTTTTTCGGAGTTTGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCACGGGAATGTAGAGACTGAAGGATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCACCAAGCTCTGTGACTTTGCACATCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGTGAATCTAGATCCCGTATGATCTCTTCTGCAAGACGACTTCCTATGACTTGTTCTAACCCCATAGGTTGAATCTTAAGAAACTGCTCCAAAGTAACATATCTAGGTTTCTTCTTCTGATTTGAATCCCCGATTTCTCTTATGGTTGATTCATCGATAAAAGAATCAAATACCCTCCAGTTACGCTTTGGTTCCAACATGACAGCAACGATATCATTTGGTAGTGCTCGGTTTCTGGATGCTAAAGTTGAGATATATACATCAGC]

[+] EMBL CD129403             [GTACTGGGATCAATCGTAAAAACACAATATTTTCGAAAATCTTTACGGAAAATAAAATCCTTCTCACGAATAGCATTCACCTCATCAACAGACTTACGAACTGATTCAATGACAATATCAGGAA AC TGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCACGAGGTATGAAGACTCGTGGTAGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAATTAGACAGAGCCGGATCTGTACGCATAGGTTCTGTTTGGTTATTATTCTGATCACCTTTCGGAGACACTTTTTTTCGGAGTTTGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCACGGGAATGTAGAGACTGAAGGATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCACCAAGCTCTGTGACTTTGCACATCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGTGAATCTAGATCCCGTATGATCTCTT                                                                                                                                                                                                                                              ]
[+] EMBL CD111705             [                                                                                                                tAATATCAGGAATACATGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCACGAGGTATGAAGACTCGTGGTAGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAATTAGACAGAGCCGGATCTGTACGCATAGGTTCTGTTTGGTTATTATTCTGATTACCTTTCGGAGATAC TTTTTTCGGAGTTTGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCACGGGAATGTAGAGACTGAAGGATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCACCAAGCTCTGTGACTTTGCACAT                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD146720             [                                                                                                                                                                 GCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCACGAGGTATGAAGACTCGTGGTAGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAATTAGACAGAGCCGGATCTGTACGCATAGGTTCTGTTTGGTTATTATTCTGATCACCTTTCGGAGATAC TTCTTTCGGAGTTTGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCACGGGAATGTAGAGACTGAAGGATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCACCAAGCTCTGTGACTTTGCATATCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGTGAATCTAGATCCCGTATGA                                                                                                                                                                                                                                                    ]
[+] EMBL CD144440             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGACTTTGCATATCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGTGAATCTAGATCCCGTATGATCTCTTCTGCAAGACGACTTCCTATGACTTGTTCTAACCCCATAGGTTGAATCTTAAGAAACTGCTCCAAAGTAACATATCTAGGTTTCTTCTTCTGATTTGAATCCCCGATTTCTCTTATGGTTGATTCATCGATAAAAGAATCAAATACCCTCCAGTTACGCTTTGGTTCCAACATGACAGCAACGATATCATTTGGTAGTGCTCGGTTTCTGGATGCTAAAGTTGAGATATATACATCAGC]




>consensus_8597#0
GTACTGGGATCAATCGTAAAAACACAATATTTTCGAAAATCTTTACGGAAAATAAAATCC
TTCTCACGAATAGCATTCACCTCATCAACAGACTTACGAACTGATTCAATGACAATATCA
GGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCC
GTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTC
GGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAG
GTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCACGAGGTATGAAGACTCGTGGT
AGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAATTAGACAGAGCCGGATCTGTA
CGCATAGGTTCTGTTTGGTTATTATTCTGATCACCTTTCGGAGATACTTTTTTCGGAGTT
TGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCACGGGAATGTAGAGACTGAAGG
ATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCACCAAGCTCTGTGACTTTGCACA
TCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGTGAATCTAGATCCCGTATGATC
TCTTCTGCAAGACGACTTCCTATGACTTGTTCTAACCCCATAGGTTGAATCTTAAGAAAC
TGCTCCAAAGTAACATATCTAGGTTTCTTCTTCTGATTTGAATCCCCGATTTCTCTTATG
GTTGATTCATCGATAAAAGAATCAAATACCCTCCAGTTACGCTTTGGTTCCAACATGACA
GCAACGATATCATTTGGTAGTGCTCGGTTTCTGGATGCTAAAGTTGAGATATATACATCA
GC

consensusID : consensus_8597#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 532
fasta sequence

                              [CAGGGTGATCAATAAATCCCTGAGCATCTTCATAACTGAGTTTACAACACGAACGAATAAATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAGAAAACGCTAATTTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGACGTGGAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCTTATCAACTAGACTGTTTGGTTTCACAAAATATGAAACATCAGCTATATGTACACCAACGAACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGGT]

[-] EMBL CD118852             [CAGGGTGATCAATAAATCCCTGAGCATCTTCATAACTGAGTTTACAACACGAACGAATAAATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAGAAAACGCTAAATTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGGCGTGGAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCTTATCAACTAGACTGTTTGGTTTCACAAAATATGAAACATCAGCTATATGTACACCAACGAACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGGT]
[-] EMBL CD118717             [CAGGGTGATCAATAAATCCCTGAGCATCTTCATAACTGAGTTTACAACACGAACGAATAAATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAGAAAACGCTAATTTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGACGTGGAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCTTATCAACTAGACTGTTTGGTTTCACAAAATATGAAACATCAGCTATATGTACACCAACGAACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAA           ]
[-] EMBL CD118809             [                                                       AATAAATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAGAAAACGCTAATTTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGACGTGGAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCTTATCAACTAGACTGTTTGGTTTCACAAAATATGATACATCAGCTATATGTACACCAACGAACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGAATTTTTCAGGAA           ]




>consensus_8597#1
CAGGGTGATCAATAAATCCCTGAGCATCTTCATAACTGAGTTTACAACACGAACGAATAA
ATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAG
AAAACGCTAATTTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGACGTG
GAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCT
TATCAACTAGACTGTTTGGTTTCACAAAATATGAAACATCAGCTATATGTACACCAACGA
ACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCT
GCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAAT
TCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCA
ATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8597#0      ------------------------------------------------------------
consensus_8597#1      CAGGGTGATCAATAAATCCCTGAGCATCTTCATAACTGAGTTTACAACACGAACGAATAA 60
                                                                                  

consensus_8597#0      ------------------------------------------------------------
consensus_8597#1      ATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAG 120
                                                                                  

consensus_8597#0      ------------------------------------------------------------
consensus_8597#1      AAAACGCTAATTTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGACGTG 180
                                                                                  

consensus_8597#0      ---------------GTACTGGGATCAATCGTAAAAACACAATATTTTCGAAAATCTTTA 45
consensus_8597#1      GAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCT 240
                                       * * * *  **   ** * *        *          *   

consensus_8597#0      CGGAAAATAAAATCCTT---CTCACGAA-TAGCATTCACC--TCATCAACAGACTTACGA 99
consensus_8597#1      TATCAACTAGACTGTTTGGTTTCACAAAATATGAAACATCAGCTATATGTACACCAACGA 300
                          ** ** * *  **    **** ** **  *  ** *    **    * **  ****

consensus_8597#0      ACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCT 159
consensus_8597#1      ACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCT 360
                      ************************************************************

consensus_8597#0      GCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAAT 219
consensus_8597#1      GCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAAT 420
                      ************************************************************

consensus_8597#0      TCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCA 279
consensus_8597#1      TCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCA 480
                      ************************************************************

consensus_8597#0      ATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCA 339
consensus_8597#1      ATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGGT-------- 532
                      **************************************************          

consensus_8597#0      CGAGGTATGAAGACTCGTGGTAGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAA 399
consensus_8597#1      ------------------------------------------------------------
                                                                                  

consensus_8597#0      TTAGACAGAGCCGGATCTGTACGCATAGGTTCTGTTTGGTTATTATTCTGATCACCTTTC 459
consensus_8597#1      ------------------------------------------------------------
                                                                                  

consensus_8597#0      GGAGATACTTTTTTCGGAGTTTGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCA 519
consensus_8597#1      ------------------------------------------------------------
                                                                                  

consensus_8597#0      CGGGAATGTAGAGACTGAAGGATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCAC 579
consensus_8597#1      ------------------------------------------------------------
                                                                                  

consensus_8597#0      CAAGCTCTGTGACTTTGCACATCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGT 639
consensus_8597#1      ------------------------------------------------------------
                                                                                  

consensus_8597#0      GAATCTAGATCCCGTATGATCTCTTCTGCAAGACGACTTCCTATGACTTGTTCTAACCCC 699
consensus_8597#1      ------------------------------------------------------------
                                                                                  

consensus_8597#0      ATAGGTTGAATCTTAAGAAACTGCTCCAAAGTAACATATCTAGGTTTCTTCTTCTGATTT 759
consensus_8597#1      ------------------------------------------------------------
                                                                                  

consensus_8597#0      GAATCCCCGATTTCTCTTATGGTTGATTCATCGATAAAAGAATCAAATACCCTCCAGTTA 819
consensus_8597#1      ------------------------------------------------------------
                                                                                  

consensus_8597#0      CGCTTTGGTTCCAACATGACAGCAACGATATCATTTGGTAGTGCTCGGTTTCTGGATGCT 879
consensus_8597#1      ------------------------------------------------------------
                                                                                  

consensus_8597#0      AAAGTTGAGATATATACATCAGC 902
consensus_8597#1      -----------------------