These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 881 fasta sequence [GTTGTCCAAGACACTGAATTTTAACANTCTGACAGTTTACCACATCAATTGTGAAATCAAATGATCAAAGACCACACCAGTTTTCTTACAATTATCCATCATGATTGAATTAATTTTCCCCTTAATTTGAACTGTGCATTCATTACATTTATGAATGCAAACTGTTTGCTTTGTTTCAGTAGCAACAATTNGTAAATTTCCGGCAGACTGAAAATTTTCTACAATCCATCTGTTACCCCTTAGTTCCAAGCATCCAGCCCCCGACGACCCTTTCTCAGACGGTGGTCGGACAGTTGGATTACTCGATGGTGAGTTCTTTTGATCT-CGTGTTGTGTGCATAATAGG-TCCTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGTTCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGAGCATTCCAAACCAAACCAGTGGTATGATGTTTGTTAACATAAACTTGTAGTGCAGTCCAAACTGACATTAAAGATTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGATGGTGCAGGAGTCTGAGTAGTCTAAACGCTTAAAAACAAAACTTACATCACTTAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGTTAAAAAAAT] [-] EMBL AA629474 [GTTGTCCAAGACACTGAATTTTAACANTCTGACAGTTTACCACATCAATTGTGAAATCAAATGATCAAAGACCACACCAGTTTTCTTACAATTATCCATCATGATTGAATTAATTTTCCCCTTAATTTGAACTGTGCATTCATTACATTTATGAATGCAAACTGTTTGCTTTGTTTCAGTAGCAACAATTNGTAAATTTCCGGCAGACTGAAAATTTTCTACAATCCATCTGTTACCCCTTAGTTCCAAGCATCCAGCCCCCGACGACCCTTTCTCAGACGGTGGTCGGACAGTTGGATTACTCGATGGTGAGTTCTTTTGATCTCCGTGTTGTGTGCATAATAGGTTCNTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGNTGTTCCACGATTCAAATCAGCGAATAAAGCAGAC ] [-] EMBL CD083672 [ TCCCCTTAATTTGAACTGTGCATTCATTACATTTATGAATGCAAACTGTTTGCTTTGTTTCAGTAGCAACAATTTGTAAATTTCCGGCAGACTGAAAATTTTCTACAATCCATCTGTTACCCCTTAGTTCCAAGCATCCAGCCCCCGACGACCCTTTCTCAGACGGTGGTCGGACAGTTGGATTACTCGATGGTGAGTTCTTTTGATCT CGTGTTGTGTGCATAATAGG TCCTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGTTCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGA CATTCCAAACCAAACCAGTGGTATG ] [+] EMBL CD091652 [ TAGG TCCTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAAATATCACTGCTGTTCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGAGCATTCCAAACCAAACCAGTGGTATGATGTTTGTTAACATAAACTTGTAGTGCAGTCCAAACTGACATTAAAGATTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGATGGTGCAGGAGTCTGAGTAGTCTAAACGCTTAAAAACAAAACTTACATCACTTAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGTTAAAAAAAT] [+] EMBL CD091654 [ TAGG TCCTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGCTCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGAGCATTCCAAACCAAACCAGTGGTATGATGTTTGTTAACATAAACTTGTAGTGCAGTCCAAACTGACATTAAAGATTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAc ] [-] EMBL CD059516 [ TAGG TCCTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGTTCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGAGCATTCCAAACCAAACCAGTGGTATG ] consensusID : consensus_8605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 426 fasta sequence [TTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGATGGTGCAGGAGTATCACTTAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGGTTAAAAAATTTACTGCTTCGATTATTATCCTTAAATTTGATAACTTCTTCTATTAGATTTCCCAATGGTGCTATAATAAGCTTTAGGTCCGAGTCAGAAGGTTTTGAGCATTCAGCTGCCAATTTGATTATCTCTTCTTGCATCAAAAAGCATTTTTTAACCATGGAGGCGTGATTTCCAACAATATCTCCAATTTCGAAACTATTAAGTAGGTATTCCGATAAGGGGCCATTGACTATTTCATGANATTCCTTGACTGA] [+] EMBL CD181219 [TTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGATGGTGCAGGAGTATCACTTAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGGTTAAAAAATTTACTGCTTCGATTATTATCCTTAAATTTGATAACTTCTTCTATTAGATTTCCCAATGGTGCTATAATAAGCTTTAGGTCCGAGTCAGAAGGTTTTG ] [+] EMBL CD190595 [ TAACGTATGTCGATGGTGCAGGAGTATCACTTAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGGTTAAAAAATTTACTGCTTCGATTATTATCCTTAAATTTGATAACTTCTTCTATTAGATTTCCCAATGGTGTTATAATAAGCTTTAGGTCCGAGTCAGAAGGTTTTGAGCATTCAGCTGCCAATTTGATTATCTCTTCTTGCATCAAAAAGCATTTTTTAACCATGGAGGCGTGATTTCCAACAATATCTCCAATTTCGAAACTATTAAGTAGGTATTCCGATAAGGGGCCATTGACTATTTCATGANATTCCTTGACTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8605#0 GTTGTCCAAGACACTGAATTTTAACANTCTGACAGTTTACCACATCAATTGTGAAATCAA 60 consensus_8605#1 ------------------------------------------------------------ consensus_8605#0 ATGATCAAAGACCACACCAGTTTTCTTACAATTATCCATCATGATTGAATTAATTTTCCC 120 consensus_8605#1 ------------------------------------------------------------ consensus_8605#0 CTTAATTTGAACTGTGCATTCATTACATTTATGAATGCAAACTGTTTGCTTTGTTTCAGT 180 consensus_8605#1 -------------------------------------------------TTTTTTCCAAG 11 *** ** ** consensus_8605#0 AGCAACAATTNGTAAATTTCCGGCAGACTGAAAATTTTCTACAATCCATCTGTTACCCCT 240 consensus_8605#1 CACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCATAAAGAATTCAC 71 * * * ** ** * * * *** ** *** * * consensus_8605#0 TAGTTCCAAGCATCCAGCCCCCGACGACCCTTTCTCAGACGGTGGTCGGACAGTTGGATT 300 consensus_8605#1 CTGCTTCTTGCAT---GGTTTTAACG----TATGTC-GATGGTG--CAGGAGTATCACTT 121 * * * **** * *** * * ** ** **** * * * ** consensus_8605#0 ACTCGATGGTGAGTTCTTTTGATCTCGTGTTGTGTGCATAATAGGTCCTTCACGAAGTTT 360 consensus_8605#1 AACCAGCCTAGAGCTGTCACAGACTCG-GCCACA-GC-TGAAAGATGGTT-AAAAAATTT 177 * * *** * * **** * ** * * ** * ** * ** *** consensus_8605#0 GGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGT 420 consensus_8605#1 ACTGCTTCGATTATTATCCTTAAATTTGATAACTT--CTTCTATTAGATTTCCCAATGGT 235 * ** ** * * * ** * * **** * ******* ** * ** consensus_8605#0 TCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGC-----TTGC 475 consensus_8605#1 GCTATAATAAGCTTTAG-GTCCGAGTCAGAAGGTTTTGAGCATTCAGCTGCCAATTTGAT 294 * * ** * ** * * **** ** *** ** **** * consensus_8605#0 AATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTG 535 consensus_8605#1 TATCTCTTCTTGCATCAAAAAGCATTTTTTAAC-CATGGAGGCGTGATTTCCAACAAT-A 352 ** * * * ** **** ** * ** ** ** * *** * ****** consensus_8605#0 GAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCA 595 consensus_8605#1 TCTCCAATTTCGAAACTAT-TAAGTAGGTATTCCGATAAGGGGCCATTGACTATTT--CA 409 * *** * ** * * * ** * * * * ** * * *** ** consensus_8605#0 CGAGCATTCCAAACCAAACCAGTGGTATGATGTTTGTTAACATAAACTTGTAGTGCAGTC 655 consensus_8605#1 TGANATTCCTTGACTGA------------------------------------------- 426 ** * * ** * consensus_8605#0 CAAACTGACATTAAAGATTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCC 715 consensus_8605#1 ------------------------------------------------------------ consensus_8605#0 ATAAGAATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGAT 775 consensus_8605#1 ------------------------------------------------------------ consensus_8605#0 GGTGCAGGAGTCTGAGTAGTCTAAACGCTTAAAAACAAAACTTACATCACTTAACCAGCC 835 consensus_8605#1 ------------------------------------------------------------ consensus_8605#0 TAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGTTAAAAAAAT 881 consensus_8605#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||