cluster # 8606

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Schistosoma mansoni
cluster # 8606 cluster # 8606 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8606#0 length = 758 sequences # 4
consensus_8606#1 length = 543 sequences # 1

consensus_8606#2 length = 415 sequences # 1
consensus_8606#3 length = 165 sequences # 1

consensusID : consensus_8606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 758
fasta sequence

                              [GCTGAAGGGGCAGATGCTATGTATGTAAAGCTCGTATCGTCAGATGACCATGAGTTCTACGTTCGTCGAGAGCATGCTCTTACAAGCGGCACCATAAAAGCAATGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAAATGTTGTACATTTTCGTGAAATACCATCACATGTATTACAAAAAGTATGCAGTTATTTTGCATATAAAGTACGTTATACAAATAGTTCTAGTGAAATACCAGAATTTCCTATAGCACCAGAAATTTCATTAGAATTATTAATGGCTGCTAATTTTTTAGATTGTTAATTCATTAGTTATTATTAATTAATCCCACTTATATACTTTCTTTATTTTTTATCATTGTTGTTATGGTCACTAATTTTTTTCCTTTTTTGCGCTTCATTCAATTTAAATGATGCTGCGCTTTGTTTTGTGTTTTGGTTTGTTACTATCTTAACAATAATCTTGTGAAGTGGAGTGGAGTGGAGTATTCATTATCAGCTTGTTATTATCATTCCTAATACGTGAAAATAGACAGTGAGGAATACCTTCAATACTCGTATGTCATCATTTCCATAAAAGTTAATATTTTCTAGTACAACAAAAAACATACCGTGATAATAAACAAAAAAATAACCCTTACTGTCTCTACTACTACTTCTACTTCTGCCATTGTGCTTCCTCTGTTTGATTGTTAAACATATTAAAGAAAAAAATATATATATATTAGTACTTTTAAAAAAAAAAAAAAAAAA]

[+] EMBL CD196702             [GCTGAAGGGGCAGATGCTATGTATGTAAAGCTCGTATCGTCAGATGACCATGAGTTCTACGTTCGTCGAGAGCATGCTCTTACAAGCGGCACCATAAAAGCAATGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAAATGTTGTACATTTTCGTGAAATACCATCACATGTATTACAAAAAGTATGCAGTTATTTTGCATATAAAGTACGTTATACAAATAGTTCTAGTGAAATACCAGAATTTCCTATAGCACCAGAAATTTCATTAGAATTATTAATGGCTGCTAATTTTTTAGATTGTTAATTCATTAGTTATTATTAATTAATCCCACTTATATACTTTCTTTATTTTTTATCATTGTTGTTATGGTCACTAATTTTTGTCCTTTTTTGCGCTTCATTCAATTTAAATGATGCTGCGCTTTGTTTTGTGTTTTGGTTTGTTACTATCTTAAC                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD196539             [GCTGAAGGGGCAGATGCTATGTATGTAAAGCTCGTATCGTCAGATGACCATGAGTTCTACGTTCGTCGAGAGCATGCTCTTACAAGCGGCACCATAAAAGCAATGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAAATGTTGTACATTTTCGTGAAATACCATCACATGTATTACAAAAAGTATGCAGTTATTTTGCATATAAAGTACGTTATACAAATAGTTCTAGTGAAATACCAGAATTTCCTATAGCACCATAAATTTCATTAGAATTATTAATGGCTGCTAATTTTTTAGATTGTTAATTCATTAGTTATTATTAATTAATCCCACTTATATACTTTCTTTATTTTTTATCATTGTTGTTATGGTCACTAATTTTTTTCCCTTTTTGCG                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD201774             [               GCTATGTATGTAAAGCTCGTATCGTCAGATGACCATGAGTTCTACGTTCGTCGAGAGCATGCTCTTACAAGCGGCACCATAAAAGCAATGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAAATGTTGTACATTTTCGTGAAATACCATCACATGTATTACAAAAAGTATGCAGTTATTTTGCATATAAAGTACGTTATACAAATAGTTCTAGTGAAATACCAGAATTTCCTATAGCACCAGAAATTTCATTAGAATTATTAATGGCTGCTAATTTTTTAGATTGTTAATTCATTAGTTATTATTAATTAATCCCACTTATATACTTTCTTTATTTTTTATCATTGTTGTTATGGTCACTAATTTTTTTCCTTTTTTGCGCTTCATTCAATCTAAATGATGCTGCGCTTTGTTTTGTGTTTTGGTTTGTTACTATCTTAACAATAATCTTGTGAAGTGGAGTGGAGTGGAGTATTCATTATCAGCTTGTTATTATCATTCCTAATACGTGAA                                                                                                                                                                                                                                  ]
[-] EMBL AI395798             [                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTGTTACTATCGGCACAATAATCTTGTGAAGTGGAGTGGAGTGGAGTATTCATTATTAGCTTGTTATTATTATTCCTAATACGTGAAAATAGACAGTGAGGAATACCTTCAATACTCGTATGTCATCATTTCCATAAAAGTTAATATTTTCTAGTACAACAAAAAACATACCGTGATAATAAACAAAAAAATAACCCTTACTGTCTCTACTACTACTTCTACTTCTGCCATTGTGCTTCCTCTGTTTGATTGTTAAACATATTAAAGAAAAAAATATATATATATTAGTACTTTTAAAAAAAAAAAAAAAAAA]




>consensus_8606#0
GCTGAAGGGGCAGATGCTATGTATGTAAAGCTCGTATCGTCAGATGACCATGAGTTCTAC
GTTCGTCGAGAGCATGCTCTTACAAGCGGCACCATAAAAGCAATGCTCTCAGGTCCAGGT
CAATTTCAAGAGAATGAAACAAATGTTGTACATTTTCGTGAAATACCATCACATGTATTA
CAAAAAGTATGCAGTTATTTTGCATATAAAGTACGTTATACAAATAGTTCTAGTGAAATA
CCAGAATTTCCTATAGCACCAGAAATTTCATTAGAATTATTAATGGCTGCTAATTTTTTA
GATTGTTAATTCATTAGTTATTATTAATTAATCCCACTTATATACTTTCTTTATTTTTTA
TCATTGTTGTTATGGTCACTAATTTTTTTCCTTTTTTGCGCTTCATTCAATTTAAATGAT
GCTGCGCTTTGTTTTGTGTTTTGGTTTGTTACTATCTTAACAATAATCTTGTGAAGTGGA
GTGGAGTGGAGTATTCATTATCAGCTTGTTATTATCATTCCTAATACGTGAAAATAGACA
GTGAGGAATACCTTCAATACTCGTATGTCATCATTTCCATAAAAGTTAATATTTTCTAGT
ACAACAAAAAACATACCGTGATAATAAACAAAAAAATAACCCTTACTGTCTCTACTACTA
CTTCTACTTCTGCCATTGTGCTTCCTCTGTTTGATTGTTAAACATATTAAAGAAAAAAAT
ATATATATATTAGTACTTTTAAAAAAAAAAAAAAAAAA

consensusID : consensus_8606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [TAGGTTTTCGCGCTGCTACTTGACTGTAATGACTGAGGTTCAGTCGAGTGCTGGTGCAGAACAAAAGTATGGGGGTGCTGAAGGGGCAGATGCTATGTATGTAAAGCTCGTATCGTCAGATGACCATGAGTTCTACGTTCGTCGAGAGCATGCTCTTACAAGCGGCACCATAAAAGCAATGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAAATGTTGTACATTTTCGTGAAATACCATCACATGTATTACAAAAATATGCAGTTATTTTGCATATAAAGTACGTTATACAAATAGTTCCCAGTGAAATACCAGAATTTCCTATGAGCCCAAGAAATTCCATTTAGAATTTTTAAGGGGCGCCGAATTTTTTAGATAGTGAATCAATAGTGATTGATAAATCACCCCCCTTGGAGACCTGCGCTATTCGTACAATGTGGGGAGGGCACAAATTTCTCCCCTTTGGGCGCGACAACATTGAAGGGGCGCGCCTTGTTTTGGGTTGGGGGGGTACAACCAAAAAAAACTGGGGAAGGGG]

[+] EMBL AI447054             [TAGGTTTTCGCGCTGCTACTTGACTGTAATGACTGAGGTTCAGTCGAGTGCTGGTGCAGAACAAAAGTATGGGGGTGCTGAAGGGGCAGATGCTATGTATGTAAAGCTCGTATCGTCAGATGACCATGAGTTCTACGTTCGTCGAGAGCATGCTCTTACAAGCGGCACCATAAAAGCAATGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAAATGTTGTACATTTTCGTGAAATACCATCACATGTATTACAAAAATATGCAGTTATTTTGCATATAAAGTACGTTATACAAATAGTTCCCAGTGAAATACCAGAATTTCCTATGAGCCCAAGAAATTCCATTTAGAATTTTTAAGGGGCGCCGAATTTTTTAGATAGTGAATCAATAGTGATTGATAAATCACCCCCCTTGGAGACCTGCGCTATTCGTACAATGTGGGGAGGGCACAAATTTCTCCCCTTTGGGCGCGACAACATTGAAGGGGCGCGCCTTGTTTTGGGTTGGGGGGGTACAACCAAAAAAAACTGGGGAAGGGG]




>consensus_8606#1
TAGGTTTTCGCGCTGCTACTTGACTGTAATGACTGAGGTTCAGTCGAGTGCTGGTGCAGA
ACAAAAGTATGGGGGTGCTGAAGGGGCAGATGCTATGTATGTAAAGCTCGTATCGTCAGA
TGACCATGAGTTCTACGTTCGTCGAGAGCATGCTCTTACAAGCGGCACCATAAAAGCAAT
GCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAAATGTTGTACATTTTCGTGAAAT
ACCATCACATGTATTACAAAAATATGCAGTTATTTTGCATATAAAGTACGTTATACAAAT
AGTTCCCAGTGAAATACCAGAATTTCCTATGAGCCCAAGAAATTCCATTTAGAATTTTTA
AGGGGCGCCGAATTTTTTAGATAGTGAATCAATAGTGATTGATAAATCACCCCCCTTGGA
GACCTGCGCTATTCGTACAATGTGGGGAGGGCACAAATTTCTCCCCTTTGGGCGCGACAA
CATTGAAGGGGCGCGCCTTGTTTTGGGTTGGGGGGGTACAACCAAAAAAAACTGGGGAAG
GGG

consensusID : consensus_8606#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [CAGAATTTCCTATAGCACCAGAAATTTCATTAGAATTATTAATGGCTGCTAATTTTTTAGATTGTTAATTCATTAGTTATTATTAATTAATCCCACTTATATACTTTCTTTATTTTTTAACATTGTTGTTATGGTCACTAATTTTTTTCCCTTTTTGGCGCTCAATACAATTAAAAGAAGGCGCGCGCTTGGTTTGGTGTTGGGTTTGGCACAATCTAAAAATATCTTGTGGAAGTGGGGTGGGGGGGACTCATCATTAGCAGGTGTGATTATCCTCCCAGTCGTGTAAACAGCGGGGAGACCTCACTACTCGGACGCTCATCCTTAAATAATATTTCTCTACACAAAACATACGTGATATGACAAAAATACCATATGCCTATATATATCGCGTGTCTCCGCGTTGATGTCAACA]

[+] EMBL AI820498             [CAGAATTTCCTATAGCACCAGAAATTTCATTAGAATTATTAATGGCTGCTAATTTTTTAGATTGTTAATTCATTAGTTATTATTAATTAATCCCACTTATATACTTTCTTTATTTTTTAACATTGTTGTTATGGTCACTAATTTTTTTCCCTTTTTGGCGCTCAATACAATTAAAAGAAGGCGCGCGCTTGGTTTGGTGTTGGGTTTGGCACAATCTAAAAATATCTTGTGGAAGTGGGGTGGGGGGGACTCATCATTAGCAGGTGTGATTATCCTCCCAGTCGTGTAAACAGCGGGGAGACCTCACTACTCGGACGCTCATCCTTAAATAATATTTCTCTACACAAAACATACGTGATATGACAAAAATACCATATGCCTATATATATCGCGTGTCTCCGCGTTGATGTCAACA]




>consensus_8606#2
CAGAATTTCCTATAGCACCAGAAATTTCATTAGAATTATTAATGGCTGCTAATTTTTTAG
ATTGTTAATTCATTAGTTATTATTAATTAATCCCACTTATATACTTTCTTTATTTTTTAA
CATTGTTGTTATGGTCACTAATTTTTTTCCCTTTTTGGCGCTCAATACAATTAAAAGAAG
GCGCGCGCTTGGTTTGGTGTTGGGTTTGGCACAATCTAAAAATATCTTGTGGAAGTGGGG
TGGGGGGGACTCATCATTAGCAGGTGTGATTATCCTCCCAGTCGTGTAAACAGCGGGGAG
ACCTCACTACTCGGACGCTCATCCTTAAATAATATTTCTCTACACAAAACATACGTGATA
TGACAAAAATACCATATGCCTATATATATCGCGTGTCTCCGCGTTGATGTCAACA

consensusID : consensus_8606#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 165
fasta sequence

                              [ATGCTCTTACAAGCGGCACCATAAAAGCAATGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAAATGTTGTACAATTTTCGTGAGATACCATCACATGTATTTCCAAAAAGTATGCAGTTATTTTGCATATAAAAATTTCCTAGCACAGAGATTTTCACT]

[+] EMBL SMAA25601            [ATGCTCTTACAAGCGGCACCATAAAAGCAATGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAAATGTTGTACAATTTTCGTGAGATACCATCACATGTATTTCCAAAAAGTATGCAGTTATTTTGCATATAAAAATTTCCTAGCACAGAGATTTTCACT]




>consensus_8606#3
ATGCTCTTACAAGCGGCACCATAAAAGCAATGCTCTCAGGTCCAGGTCAATTTCAAGAGA
ATGAAACAAATGTTGTACAATTTTCGTGAGATACCATCACATGTATTTCCAAAAAGTATG
CAGTTATTTTGCATATAAAAATTTCCTAGCACAGAGATTTTCACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8606#1      TAGGTTTTCGCGCTGCTACTTGACTGTAATGACTGAGGTTCAGTCGAGTGCTGGTGCAGA 60
consensus_8606#3      ------------------------------------------------------------
consensus_8606#0      ------------------------------------------------------------
consensus_8606#2      CAGAATTTCCTATAGCACCAGAAATTTCATTAGAATTATTAATGGCTGCTAATTTTTTAG 60
                                                                                  

consensus_8606#1      ACAAAAGTATGGGGGTGCTGAAGGGGCAGATGCTATGTATGTAAAGCTCGTATCGTCAGA 120
consensus_8606#3      ------------------------------------------------------------
consensus_8606#0      ----------------GCTGAAGGGGCAGATGCTATGTATGTAAAGCTCGTATCGTCAGA 44
consensus_8606#2      ATTGTTAATTCATTAGTTATTATTAATTAATCCCACTTATATACTTTCTTTATTTTTTAA 120
                                                                                  

consensus_8606#1      TGACCATGAGTTCTACGTTCGTCGAGAGCATGCTCTTACAAGCGGCACCATAAAAGCAA- 179
consensus_8606#3      -----------------------------ATGCTCTTACAAGCGGCACCATAAAAGCAA- 30
consensus_8606#0      TGACCATGAGTTCTACGTTCGTCGAGAGCATGCTCTTACAAGCGGCACCATAAAAGCAA- 103
consensus_8606#2      CATTGTTGTTATGGTCACTAATTTTTTTCCCTTTTTGGCGCTCAATACAATTAAAAGAAG 180
                                                       * *  *   *   ** ** ***  ** 

consensus_8606#1      ---TGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAA-ATGTTGTACA-TTTTCG 234
consensus_8606#3      ---TGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAA-ATGTTGTACAATTTTCG 86
consensus_8606#0      ---TGCTCTCAGGTCCAGGTCAATTTCAAGAGAATGAAACAA-ATGTTGTACA-TTTTCG 158
consensus_8606#2      GCGCGCGCTTGGTTTGGTGTTGGGTTTGGCACAATCTAAAAATATCTTGTGGAAGTGGGG 240
                          ** **  * *    **    **    * ***  ** ** ** ****  *  *   *

consensus_8606#1      TGAAATACCATCACATGTATTAC--AAAAATATGCAGTTATTT-TGCATATAA-----AG 286
consensus_8606#3      TGAGATACCATCACATGTATTTCCAAAAAGTATGCAGTTATTT-TGCATATAA-----AA 140
consensus_8606#0      TGAAATACCATCACATGTATTAC-AAAAAGTATGCAGTTATTT-TGCATATAA-----AG 211
consensus_8606#2      TGGGGGGGACTCATCATTAGCAGGTGTGATTATCCTCCCAGTCGTGTAAACAGCGGGGAG 300
                      **        ***    **         * *** *    * *  ** * * *      * 

consensus_8606#1      --TACGTTATACAAATAGTTCCCAGTGAAATACCAGAATTTCCTATGAGCCCAAGAAATT 344
consensus_8606#3      ATTTCCTAGCACAGAGA-TTTTCACT---------------------------------- 165
consensus_8606#0      --TACGTTATACAAATAGTTCT-AGTGAAATACCAGAATTTCCTATAGCACCAGAAATTT 268
consensus_8606#2      ACCTCACTACTCGGACG-CTCATCCTTAAATAATATTTCTCTACACAAAACATACGTGAT 359
                          *      *  *    *     *                                  

consensus_8606#1      CCATTTAGAATTTTTAAGGGGCGCCGAATTTTTTAGATAGTGAATCAATAGTGATTGATA 404
consensus_8606#3      ------------------------------------------------------------
consensus_8606#0      C--ATTAGAATTATTAATGGCTGCTAATTTTTTAGATTGTTAATTCATTAGTTATTATTA 326
consensus_8606#2      ATGACAAAAATACCATATGCCTATATATATCGCGTGTCTCCGCGTTGATGTCAACA---- 415
                                                                                  

consensus_8606#1      AATCACCCCCCTTGGAGACCTGCGCTATTCGTA--CAATGTGGGGAGGGCACAAATTTCT 462
consensus_8606#3      ------------------------------------------------------------
consensus_8606#0      ATTAATCCCACTTATATACTTTCTTTATTTTTTATCATTGTTGTTATGGTCACTAATTTT 386
consensus_8606#2      ------------------------------------------------------------
                                                                                  

consensus_8606#1      CCCCTTTGGGCGCGACAACATTGAAGGGGCGCGCCTTGTTTTGGGTTGGGGGGGTACAAC 522
consensus_8606#3      ------------------------------------------------------------
consensus_8606#0      TTTCCTTTTTTGCGCTTCATTCAATTTAAATGATGCTGCGCTTTGTTTTGTGTTTTGGTT 446
consensus_8606#2      ------------------------------------------------------------
                                                                                  

consensus_8606#1      CAAAAAAAACTGGGGAAGGGG--------------------------------------- 543
consensus_8606#3      ------------------------------------------------------------
consensus_8606#0      TGTTACTATCTTAACAATAATCTTGTGAAGTGGAGTGGAGTGGAGTATTCATTATCAGCT 506
consensus_8606#2      ------------------------------------------------------------
                                                                                  

consensus_8606#1      ------------------------------------------------------------
consensus_8606#3      ------------------------------------------------------------
consensus_8606#0      TGTTATTATCATTCCTAATACGTGAAAATAGACAGTGAGGAATACCTTCAATACTCGTAT 566
consensus_8606#2      ------------------------------------------------------------
                                                                                  

consensus_8606#1      ------------------------------------------------------------
consensus_8606#3      ------------------------------------------------------------
consensus_8606#0      GTCATCATTTCCATAAAAGTTAATATTTTCTAGTACAACAAAAAACATACCGTGATAATA 626
consensus_8606#2      ------------------------------------------------------------
                                                                                  

consensus_8606#1      ------------------------------------------------------------
consensus_8606#3      ------------------------------------------------------------
consensus_8606#0      AACAAAAAAATAACCCTTACTGTCTCTACTACTACTTCTACTTCTGCCATTGTGCTTCCT 686
consensus_8606#2      ------------------------------------------------------------
                                                                                  

consensus_8606#1      ------------------------------------------------------------
consensus_8606#3      ------------------------------------------------------------
consensus_8606#0      CTGTTTGATTGTTAAACATATTAAAGAAAAAAATATATATATATTAGTACTTTTAAAAAA 746
consensus_8606#2      ------------------------------------------------------------
                                                                                  

consensus_8606#1      ------------
consensus_8606#3      ------------
consensus_8606#0      AAAAAAAAAAAA 758
consensus_8606#2      ------------