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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1379 fasta sequence
[GTGTGATACANGTAGTTGAAAATGGTGGTCTTCGTAGTTTAATTTATGCTTGTCGTTCAAGTGATCTACCATCTTTACGTCATGCAGCTGTCTGTCTAATGAGTTTAGCTCTATTCGGTGGGAGTGGAAGTCATAGTGAAATGATGCGCCAACATGCAATTGAATGGTTATTTTGTTTAGCGTTTCATCAAGATGAAGTAATTAGATATTTTGCATGTTTAACTAGTGCTGTACTATCTACTAATCCCGAATTGACCGCTGCAGTAAATGCTTCTTGTACACTCGACCTAGTGATGCCTTTTGTACGTTCACATTCACCAATAGAATTCGCTCGTCATCAGTTAGTTGCTGCTTTTCAACACACTTGTAAGAATAGCGCATCCTATACTTCAGAGTCACAGACATCTTTTACAAACAATCAGTCGGACACTACAAAATATTGCTGCGAAAATCGGTATACAGGGGGGACAGCCGATTGGTTAAAACGTTTAATCCCAGTTATGTTCAGTAAACAATTTGAACCACGTGTTTTGGTTGCTTTTCATTTTGCGGTTGAAGCTACACTAAAATCTGATATGAAATGCAGTCAGGTTTTTTACGAATCGGATATCGTAGAAATATTGCGTAATGTTGTCTGCAGTTCAACTTTTCTTGAGTCGAAATTTGCAGCAATGGCTCTACATATTTTAGGTGAGGACATCCCTTGTAGA-TACC-GCCCAAGTACCGTTATGGGATTATGCTGAAGTTGAATGCTGGTTGACTCGAAGAGGATTTGAAGATTTGGCTAGTAAATTTTCAAAGCTACGTGTTGATGGCGATTTATTACTTAGACTAGATGAATTCAAATTAGAGAAGGATTTAGGACTTGAAAATGGAATCACGAGATCTAGATTATTACGTGAATTATGCTCTTTGAAGATTAATGCTGATTATTCAGCTGTTGATCCAACTGGAATTTCCGCTTGGCTACGTGAAGCTACGCGTATCACTGCTTTAAATAATACTAATACACCAAGAAATCCAATGACATCAGATAATGTTGTAATTAAAGACGATTTTCAATGGACAATGGCTTCTACTAACGCATCAGAATATACCTCGAAATACTGTTATACACATGATTTATCCTGTTTAAATCAATCATTTGATCTTCTTCAATATACATATAATTTTATTTCAGCCGGTGTGCATTGTCCTTTCTTACCTTATTTATCAGATAAAATGCTTTTAGAAGATTGTCACATTAAAAATGGGATACATCGTAAAAGAATTTTAGAAGCAATACAATCTTCCATATCTATACACAATCAGTTACGTCTTACAGATAATGATTCCAAACTGAACACTTCAAGTAAACCAAACAAATATATTGATATATT]
[+] EMBL CD067986 [GTGTGATACANGTAGTTGAAAATGGTGGTCTTCGTAGTTTAATTTATGCTTGTCGTTCAAGTGATCTACCATCTTTACGTCATGCAGCTGTCTGTCTAATGAGTTTAGCTCTATTCGGTGGGAGTGGAAGTCATAGTGAAATGATGCGCCAACATGCAATTGAATGGTTATTTTGTTTAGCGTTTCATCAAGATGAAGTAATTAGATATTTTGCATGTTTAACTAGTGCTGTACTATCTACTAATCCCGAATTGACCGCTGCAGTAAATGCTTCTTGTACACTCGACCTAGTGATGCCTTTTGTACGTTCACATTCACCAATAGAATTCGCTCGTCATCAGTTAGTTGCTGCTTTTCAACACACTTGTAAGAATAGCGCATCCTATACTTCAGAGTCACAGACATCTTTTACAAACAATCAGTCGGACACTACAAAATATTGCTGCGAAAATCGGTATACAGGGGGGACAGCCGATTGGTTAAAACGTTTAATCCCAGTTATGTTCAGTAAACAATTTGAACCACGTGTTTTGGTTGCTTTTCATTTTGCGGTTGAAGCTACACTAAAATCTGATATGAAATGCAGTCAGGTTTTTTACGAATCGGATATCGTAGAAATATTGCGTAATGTTGTCTGCAGTTCAACTTTTCTTGAGTCGAAATTTGCAG ]
[-] EMBL CD166826 [ TCGCTCGTCAACAGTTAGTTGCTGCTTTTCAACACACTTGTAAGAATAGCGCATCCTATACTTCAGAGTCACAGACATCTTTTACAAACAATCAGTCGGACACTACAAAATATTGCTGCGAAAATCGGTATACAGGGGGGACAGCCGATTGGTTAAAACGTTTAATCCCAGTTATGTTCAGTAAACAATTTGAACCACGTGTTTTGGTTGCTTTTCATTTTGCGGTTGAAGCTACACTAAAATCTGATATGAAATGCAGTCGGGTTTTTTACGAATCGGATATCGTAGAAATATTGCGTAATGTTGTCTGCAGTTCAACTTTTCTTGAGTCGAAATTTGCAGCAATGGCTCTACATATTTTAGGTGAGGACATCCCTTGTAGA TACC GCCCAAGTACCGTTATGG ]
[+] EMBL CD190975 [ TTGTCTGCAGTTCAACTTTTCTTGAGTCGAAATTTGCAGCAATGGCTCTACATATTTTAGGTGAGGACATCCCTTGTAGATTACCAGCCCAAGTACCGTTATGGGATTATGCTGAAGTTGAATGCTGGTTGACTCGAAGAGGATTTGAAGATTTGGCTAGTAAATTTTCAAAGCTACGTGTTGATGGCGATTTATTACTTAGACTAGATGAATTCAAATTAGAGAAGGATTTAGGACTTGAAAATGGAATCACGAGATCTAGATTATTACGTGAATTATGCTCTTTGAAGATTAATGCTGATTATTCAGCTGTTGATCCAACTGGAATTTCCGCT ]
[+] EMBL CD197754 [ GAATGCTGGTTGACTCGAAGAGGATTTGAAGATTTGGCTAGTAAATTTTCAAAGCTACGTGTTGATGGCGATTTATTACTTAGACTAGATGAATTCAAATTAGAGAAGGATTTAGGACTTGAAAATGGAATCACGAGATCTAGATTATTACGTGAATTATGCTCTTTGAAGATTAATGCTGATTATTCAGCTGTTGATCCAACTGGAATTTCCGCTTGGCTACGTGAAGCTACGCGTATCACTGCTTTAAATAATACTAATACACCAAGAAATCCAATGACATCAGATAATGTTGTAATTAAAGACGATTTTCAATGGACAATGGCTTCTACTAACGCATCAGAATATACCTCGAAATACTGTTATACACATGATTTATCCTGTTTAAATCAATCATTTGATCTTCTTCAATATACATATAATTTTATTTCAGCCGGTGTGCATTGTCCTTTCTTACCTTA ]
[+] EMBL CD059710 [ AGATTTGGCTAGTAAATTTTCAAAGCTACGTGTTGATGGCGATTTATTACTTAGACTAGATGAATTCAAATTAGAGAAGGATTTAGGACTTGAAAATGGAATCACGAGATCTAGATTATTACGTGAATTATGCTCTTTGAAGATTAATGCTGATTATTCAGCTGTTGATCCAACTGGAATTTCCGCTTGGCTACGTGAAGCTACGCGTATCACTGCTTTAGATAATACTAATACACCAAGAAATCCAATGACATCAGATTATGTTGTAATTAAAGACGATTTTCAATGGACAATGGCTTCTACTAACGCATCAGAATATACCTCGAGATACTGTTATACACATGATTTATCCTGTTTAAATCAATCATTTGATCTTCTTCAATATACATATAATTTTATTTCAGCCGGTGTGCATTGTCCTTTCTTACCTTATTTATCAGATAAAATGCTTTTAGAAGATTGTCACATTAAAAATGGGATACATCGTAAAAGAATTTTAGAAGCAATACAATCTTCCATATCTATACACAATCAGTTACGTCTTACAGATAATGATTCCAAACTGAACACTTCAAGTAAACCAAACAAATATATTGATATATT]
consensusID : consensus_8607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[CTATCTTCACTGGTCGTTCTACAATTTTAGATTACTATGAAATCATCTGTTGTGCCATATACTTGTCATTCACTAGGTAGTCAGATATCTTACCTACTTCTGATGATAGACATTAGCGAAACCTAAACTAATCTTTTATATACTGATTGTTATCTCATCAGATACTAATAAACCAGGACGGATTAGACTGAAACGAATGTAGTGGCCGACGCTCTCAATACTTCAAAATGTTTGTAGGTGAGAAGATTACGTTTGAGTTACCTGAGTAGTATAACTTGAATCTAAATCGCACTAGTTCTTCAAAAGTGAAATTAAACTATTATTTACTATTAAATAGACCTTTGCTAGAACTTATTTATAATGCGTACAGAAATTAAGATACTATGTAATGAAGATACATAACAAACTTTTGAAACGCTTTTAAGTCAGGTAAGTAACCTAACCATTCAACGTTTTGTCTACTTATTTTCACTTGATTGTATCACTATTATTATTTTTTGAAGGTTTTTTACGAATCGGATATCGTAGAAATATTGCGTAATGTTGTCTGCAGTTCAACTTTTCTTGAGTCGAAATTTGCAGCAATGGCTCTACA]
[-] EMBL CD062237 [CTATCTTCACTGGTCGTTCTACAATTTTAGATTACTATGAAATCATCTGTTGTGCCATATACTTGTCATTCACTAGGTAGTCAGATATCTTACCTACTTCTGATGATAGACATTAGCGAAACCTAAACTAATCTTTTATATACTGATTGTTATCTCATCAGATACTAATAAACCAGGACGGATTAGACTGAAACGAATGTAGTGGCCGACGCTCTCAATACTTCAAAATGTTTGTAGGTGAGAAGATTACGTTTGAGTTACCTGAGTAGTATAACTTGAATCTAAATCGCACTAGTTCTTCAAAAGTGAAATTAAACTATTATTTACTATTAAATAGACCTTTGCTAGAACTTATTTATAATGCGTACAGAAATTAAGATACTATGTAATGAAGATACATAACAAACTTTTGAAACGCTTTTAAGTCAGGTAAGTAACCTAACCATTCAACGTTTTGTCTACTTATTTTCACTTGATTGTATCACTATTATTATTTTTTGAAGGTTTTTTACGAATCGGATATCGTAGAAATATTGCGTAATGTTGTCTGCAGTTCAACTTTTCTTGAGTCGAAATTTGCAGCAATGGCTCTACA]
[-] EMBL CD062234 [ ACTTGTCATTCACTAGGTAGTCAGATATCTTACCTACTTCTGATGATAGACATTAGCGAAACCTAAACTAATCTTTTATATACTGATTGTTATCTCATCAGATACTAATAAACCAGGACGGATTAGACTGAAACGAATGTAGTGGCCGACGCTCTCAATACTTCAAAATGTTTGTAGGTGAGAAGATTACGTTTGAGTTACCTGAGTAGTATAACTTGAATCTAAATCGCACTAGTTCTTCAAAAGTGAAATTAAACTATTATTTACTATTAAATAGACCTTTGCTAGAACTTATTTATAATGCGTACAGAAATTAAGATACTATGTAATGAAGATACATAACAAACTTTTGAAACGCATTTAAGTCAGGTAAGTAACCTAACCATTCAACGTTTTGTCTACTTATTTTCACTTGATTGTATCACTATTATTATTTTTTGAAGGTTTTTTACGAATCGGATATCGTAGAAATATTGCGTAATGTTGTCTGCAGTTCAACTTTTCTTGAGTCGAAATTTGCAGCAATGGCTCTACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8607#0 GTGTGATACANGTAGTTGAAAATGGTGGTCTTCGTAGTTTAATTTATGCTTGTCGTTCAA 60
consensus_8607#1 ---------------------------------------CTATCTTCACTGGTCGTTCTA 21
** * ** ******* *
consensus_8607#0 GTGATCTACCATCTTTACGTCATGCAGCTGTCTGTCTAATGAGTTTAGC-TCTATTCGGT 119
consensus_8607#1 -CAATTTTAGATTACTATGAAAT-CATCTGT-TGTGCCATATACTTGTCATTCACTAGGT 78
** * ** ** * ** ** **** *** ** ** * * * * ***
consensus_8607#0 GGGAGTGGAAGTCATAGTGAAATGATGCGCCAACATGCAATTGAATGGTTATTTTGTTTA 179
consensus_8607#1 AG--TCAGATATCTTACCTACTTCTGATGATAG-ACATTAGCGAAACCTAAACTAATCTT 135
* ** ** ** * * * * * * *** * * * * *
consensus_8607#0 GCGTTTCATCAAGATGAAGTAATTAGATATTTTGCATGTTTAACTAGTGCTGTACTATCT 239
consensus_8607#1 TTATATACTGATTGTTATCTCATCAGATAC------TAATAAACCAGGACGGATTAGACT 189
* * * * * * * ** ***** * * *** ** * * **
consensus_8607#0 ACTAATCCCGAATTGACCGCTGCAGTAAATGCTTCTTGTACACTCGACCTAGTGATGCCT 299
consensus_8607#1 GAAACGAATGTAGTGGCCGACGCTCTCAATACTTCA-AAATGTTTG--TAGGTGAGAAGA 246
* * * ** *** ** * *** **** * * * ****
consensus_8607#0 TTTGTACGTTCACATTCACCAATAGAATTCGCTCGTCATCAGTTAGTTGCTGCTTTTCAA 359
consensus_8607#1 TT---ACGTTTGAGTTACCTGAGTAGTATAACTTGAATCTAAATCGCACTAGTTCTTCAA 303
** ***** ** * * * ** * * * * * * *****
consensus_8607#0 CACACTTGTAAGAATAGCGCATCCTATACTTCAGAGTCACAGACATCTTTTACAAACAAT 419
consensus_8607#1 AA-----GTGAAATTAAACTATTATTTACTATTAA---ATAGACCTTTGCTAGAACTTAT 355
* ** * * ** ** * **** * * **** * * ** ** **
consensus_8607#0 CAGTCGGACACTACAAAATATTGCTGCGAAAATCGGTATACAGGGGGGACAGCCGATTGG 479
consensus_8607#1 TTATAATGCG-TACAGAA----ATTAAGATACTATGTAATGAAGATACATAACAAACTT- 409
* * **** ** * ** * * *** * * * * * * *
consensus_8607#0 TTAAAACGTTTAATCCCAGTTATGTTCAGTAAACAATTTGA--ACCACGTGTTTTGGTTG 537
consensus_8607#1 TTGAAACGCTT--------TTAAGTCAGGTAAGTAACCTAACCATTCAACGTTTTGTCTA 461
** ***** ** *** ** **** ** * * * ****** *
consensus_8607#0 CTTTTCATTTTGCGGTTGAAGCTACACTAAAATCTGATATGAAATGCAGTCAGGTTTTTT 597
consensus_8607#1 CTTATTTTCACTTGATTGTATCACTATTATTATTT--TTTGAA---------GGTTTTTT 510
*** * * * *** * * * ** ** * * **** ********
consensus_8607#0 ACGAATCGGATATCGTAGAAATATTGCGTAATGTTGTCTGCAGTTCAACTTTTCTTGAGT 657
consensus_8607#1 ACGAATCGGATATCGTAGAAATATTGCGTAATGTTGTCTGCAGTTCAACTTTTCTTGAGT 570
************************************************************
consensus_8607#0 CGAAATTTGCAGCAATGGCTCTACATATTTTAGGTGAGGACATCCCTTGTAGATACCGCC 717
consensus_8607#1 CGAAATTTGCAGCAATGGCTCTACA----------------------------------- 595
*************************
consensus_8607#0 CAAGTACCGTTATGGGATTATGCTGAAGTTGAATGCTGGTTGACTCGAAGAGGATTTGAA 777
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 GATTTGGCTAGTAAATTTTCAAAGCTACGTGTTGATGGCGATTTATTACTTAGACTAGAT 837
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 GAATTCAAATTAGAGAAGGATTTAGGACTTGAAAATGGAATCACGAGATCTAGATTATTA 897
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 CGTGAATTATGCTCTTTGAAGATTAATGCTGATTATTCAGCTGTTGATCCAACTGGAATT 957
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 TCCGCTTGGCTACGTGAAGCTACGCGTATCACTGCTTTAAATAATACTAATACACCAAGA 1017
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 AATCCAATGACATCAGATAATGTTGTAATTAAAGACGATTTTCAATGGACAATGGCTTCT 1077
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 ACTAACGCATCAGAATATACCTCGAAATACTGTTATACACATGATTTATCCTGTTTAAAT 1137
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 CAATCATTTGATCTTCTTCAATATACATATAATTTTATTTCAGCCGGTGTGCATTGTCCT 1197
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 TTCTTACCTTATTTATCAGATAAAATGCTTTTAGAAGATTGTCACATTAAAAATGGGATA 1257
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 CATCGTAAAAGAATTTTAGAAGCAATACAATCTTCCATATCTATACACAATCAGTTACGT 1317
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 CTTACAGATAATGATTCCAAACTGAACACTTCAAGTAAACCAAACAAATATATTGATATA 1377
consensus_8607#1 ------------------------------------------------------------
consensus_8607#0 TT 1379
consensus_8607#1 --
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||