cluster # 8611

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Schistosoma mansoni
cluster # 8611 cluster # 8611 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8611#0 length = 729 sequences # 4

consensus_8611#1 length = 597 sequences # 3

consensusID : consensus_8611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 729
fasta sequence

                              [TACGCAGTACGGTAATGCAGCTGCATGGCATTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGAATGAAAAGTAATTTTTATTTTGAAACCGACTTGTATTCGAGATGGAGTATAATAATGTTAGTTTTACTTAAAGCGGACAAAATCCTGGTCCATTTATTGGTTCAGCGTTCCAACCGCGGCTCAGCATTCGACAACGAAGTTCTTCCACCCTTGGGACAAAATCCGTTGTGTTTGGTGAACCTTCAGTCCATAATCTCTCAGCTACAGCTGAACCTCGAGGCCATGATCGACTAAACAAATTCGTGTCATCCACATATTCACCCCAGATAGCTGCTTCACCTCCAACAACCAATTTCGCATCTTCCTTGCTACCTCCGAAATCTCTCGGATCAACGTGATAGTAGTTA-CGCCAGTCATCACCATAAGAAATGTAATTCAGGTACCAAGCAGCTGAGAATAGTACTCTATAGCCTGTTTTGGTAACATTTTTCATCACAGATTTCCAATCTGAGTCTTTCCA-CACATGAATTACTGCTGATTTATCACCTCTAAACCCATTTTGAAATATTTCCTGCCAAACAACTGGAGTAATATTTCGTCCAGTCGGTTTAACATCACTAATAATTTGAATTAGATTTTTTATGTAATAGCCTTCCAGACGGTGATAATCATCACCAAACTTCATTTGTTTCATGAATTCAATAATCAAAGGATTGGAACNCCAAC]

[+] EMBL AI977309             [TACGCAGTACGGTAATGCAGCTGCATGGCATTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGAATGAAAAGTAATTTTTATTTTGAAACCGACTTGTATTCGAGATGGAGTATAATAATGTTAGTTTTACTTAAAGCGGACAAAATCCTGGTCCATTTATTGGTTCAGCGTTCCAACCGCGGCTCAGCATTCGACAACGAAGTTCTTCCACCCTTGGGACAAAATCCGTTGTGTTTGGTGAACCTTCAGTCCATAATCTCTCAGCTACAGCTGAACCTCGAGGCCATGATCGACTAAACAAATTCGTGTCATCCACATATTCACCCCAGATAGCTGCTTCACCTCCAACAACCAATTTCGCATCTTCCTTGCTACCTCCGAAATCTCTCGGATCAACGTGATAGTAGTTA CGCCAGTCATCACCATAAGAAATGTAATTCAGGTACCAAGCAGCTGAGAATA                                                                                                                                                                                                                                                                            ]
[-] EMBL AW017425             [                                                                                                                                                                               ACCGCGGCTCAGCATTCGACAACGAAGTTCTTCCACCCTTGGGACAAAATCCGTTGTGTTTGGTGAACCTTCAGTCCATAATCTCTCAGCTACAGCTGAACCTCGAGGCCATGATCGACT AACAAATTCGTGTCATCCACATATTCACCCCAGATAGCTGCTTCACCTCCAACAACCAATTTCGCATCTTCCTTGCTACCTCCGAAATCTCTCGGATCAACGTGATAGTAGTTA CGCCAGTCATCACCATAAGAAATGTAATTCAGGTACCAAGCAGCTGAGAATAGTACTCTATAGCCTGTTTTGGTAACATTTTTCATCACAGATTTCCAATCTGAGTCTTTCCA CACATGAATTACTGCTGATTTATCACCTCTAAACCCATTTTGAAATATTTCCTGCCAAACA                                                                                                                                                 ]
[+] EMBL CD128812             [                                                                                                                                                                                                                                                                                                                                                                CAATTTCGCATCTTCCTTGCTACCTCCGAAGTCTCTCGGATCAACGTGATAGTAGTTA CGCCAGTCATCACCATAAGAAATGTAATTCAGGTACCAAGCAGCTGAGAATAGTACTCTATAGCCTGTTTTGGTAACATTTTTCATCACAGATTTCCAATCTGAGTCTTTCCA CACATGAATTACTGCTGATTTATCACCTCTAAACCCATTTTGAAATATTTCCTGCCAAACAACTGGAGTAATATTTCGTCCAGTCGGTTTAACATCACTAATAATTTGAATTAGATTTTTTATGTAATAG                                                                            ]
[-] EMBL SM852                [                                                                                                                                                                                                                                                                                                                                                                                                           ACGTGATAGTAGTNACCGCCAGTCATCGCCATAAGAAATGTAATTCAGGTNCCAAGCAGCTGAGGATAGTACTCTATAGCCTGTTTTGGTAACATTTTTCATCACAGATTNCCAATCTGAGTCTTTCCAGCACNTGANTTNCTGCTGATTTATCNCCTCTAAACCCATTNTGAAATATTTCCTNCCANNCAACTGGAGTAATATTTCGTCCAGTCGGTTTAACATCACTAATAATTTGAATTAGANTTTTTATGTAATAGCCTTCCAGACGGTGATAATCATCACCAAACTTCATTTGTTTCATGAATTCAATAATCAAAGGATTGGAACNCCAAC]




>consensus_8611#0
TACGCAGTACGGTAATGCAGCTGCATGGCATTTTTTTTTTTTTTTTTTTTTTTTTTTTGA
AGAATGAAAAGTAATTTTTATTTTGAAACCGACTTGTATTCGAGATGGAGTATAATAATG
TTAGTTTTACTTAAAGCGGACAAAATCCTGGTCCATTTATTGGTTCAGCGTTCCAACCGC
GGCTCAGCATTCGACAACGAAGTTCTTCCACCCTTGGGACAAAATCCGTTGTGTTTGGTG
AACCTTCAGTCCATAATCTCTCAGCTACAGCTGAACCTCGAGGCCATGATCGACTAAACA
AATTCGTGTCATCCACATATTCACCCCAGATAGCTGCTTCACCTCCAACAACCAATTTCG
CATCTTCCTTGCTACCTCCGAAATCTCTCGGATCAACGTGATAGTAGTTACGCCAGTCAT
CACCATAAGAAATGTAATTCAGGTACCAAGCAGCTGAGAATAGTACTCTATAGCCTGTTT
TGGTAACATTTTTCATCACAGATTTCCAATCTGAGTCTTTCCACACATGAATTACTGCTG
ATTTATCACCTCTAAACCCATTTTGAAATATTTCCTGCCAAACAACTGGAGTAATATTTC
GTCCAGTCGGTTTAACATCACTAATAATTTGAATTAGATTTTTTATGTAATAGCCTTCCA
GACGGTGATAATCATCACCAAACTTCATTTGTTTCATGAATTCAATAATCAAAGGATTGG
AACNCCAAC

consensusID : consensus_8611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 597
fasta sequence

                              [CGAGCTCGGTACCCTTTATCATCGCTAATAATTTGAATTAGATTTTTTATGTAATAGCCTTCCAGACGGTGATAATCATCACCAAACTTCATTTGTTTCATGAATTCAATAATCAAAGGATTGGAACGCCAACAATGATATTCAACTTCATCCCCACCTAAATGAAACCAGTTATCAGGAAATACATTGAACAACTCTTTGTATAATTGTGACACAAAGTTATAGGAGAAATTATTGATTGGATTGATTGGACCCAGAGTACCATCCAGTTCACCATTAATATAACATTTGGTTAAAACCTCTGGATATCCTTTCCCCCAAGAATTCGTATGACCTGGTGTATCGAATTCCGGCATTATTCTTATTCCTCGTAAACGAGCATAATTTAGTATATATTTCATATCGTTCGGTGTATAGATTAAAATATACGGGTGAAATGCTCCCTTTGAGGAAAGTTTCGGAAACGTTTCAGATACATAGGGAAAAGATTGATCGTCCACAATATGCCAGTGAAGTACATTCATTTTCACCATTGACATTGAATCAAGAAATTTTTCGATCT-CTTTTATGATTAATAATGTCTAGATGTATCCATTA]

[+] EMBL CD066206             [CGAGCTCGGTACCCTTTATCATCGCTAATAATTTGAATTAGATTTTTTATGTAATAGCCTTCCAGACGGTGATAATCATCACCAAACTTCATTTGTTTCATGAATTCAATAATCAAAGGATTGGAACGCCAACAATGATATTCAACTTCATCCCCACCTAAATGAAACCAGTTATCAGGAAATACATTGAACAACTCTTTGTATAATTGTGACACACAGTTATAGGAGAAA                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD144968             [                                                                                                                                                                          GTTATCAGGAAATACATTGAACAACTCTTTGTATAATTGTGACACAAAGTTATAGGAGAAATTATTGATTGGATTGATTGGACCCAGAGTACCATCCAGTTCACCATTAATATAACATTTGGTTAAAACCTCTGGATATCCTTTCCCCCAAGAATTCGTATGACCTGGTGTATCGAATTCCGGCATTATTCTTATTCCTCGTAAACGAGCATAATTTAGTATATATTTCATATCGTTCGGTGTATAGATTAAAATATACGGGTGAAATGCTCCCTTTGAGGAAAGTTTCGGAAACGTTTCAGATACATAGGGAAAAGATTGATCGTCCACAATATGCCAGTGAAGTACATTCATTTTCACCATTGACATTGAATCAAGAAATTTTTCGATCT CTTTTATGATTAATAATGTCTAGATGTATCCATTA]
[-] EMBL CD201638             [                                                                                                                                                                           TTATCAGGAAATACATTGAACAACTCTTTGTATAATTGTGACACAAAGTTATAGGAGAAATTATTGGTTGGATTGATTGGACCCAGAGTACCATCCAGTTCACCATTAATATAACATTTGGTTAAAACCTCTGGATATCCTTTCCCCCAAGAATTCGTATGACCTGGTGTATCGAATTCCGGCATTATTCTTATTCCTCGTAAACGAGCATAATTTAGTATATATTTCATATCGTTCGGTGTATAGATTAAAATATACGGGTGAAATGCTCCCTTTGAGGAAAGTTTCGGAAACGTTTCAGATACATAGGGAAAAGATTGATCGTCCACAATATGCCAGTGTAGTACATTCATTTTCACCATTGACATTGAATCAAGAAATTTTTCGATCTCCTTTAATGATAAATAATGTNNAGATGTATCAAT  ]




>consensus_8611#1
CGAGCTCGGTACCCTTTATCATCGCTAATAATTTGAATTAGATTTTTTATGTAATAGCCT
TCCAGACGGTGATAATCATCACCAAACTTCATTTGTTTCATGAATTCAATAATCAAAGGA
TTGGAACGCCAACAATGATATTCAACTTCATCCCCACCTAAATGAAACCAGTTATCAGGA
AATACATTGAACAACTCTTTGTATAATTGTGACACAAAGTTATAGGAGAAATTATTGATT
GGATTGATTGGACCCAGAGTACCATCCAGTTCACCATTAATATAACATTTGGTTAAAACC
TCTGGATATCCTTTCCCCCAAGAATTCGTATGACCTGGTGTATCGAATTCCGGCATTATT
CTTATTCCTCGTAAACGAGCATAATTTAGTATATATTTCATATCGTTCGGTGTATAGATT
AAAATATACGGGTGAAATGCTCCCTTTGAGGAAAGTTTCGGAAACGTTTCAGATACATAG
GGAAAAGATTGATCGTCCACAATATGCCAGTGAAGTACATTCATTTTCACCATTGACATT
GAATCAAGAAATTTTTCGATCTCTTTTATGATTAATAATGTCTAGATGTATCCATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8611#0      TACGCAGTACGGTAATGCAGCTGCATGGCATTTTTTTTTTTTTTTTTTTTTTTTTTTTGA 60
consensus_8611#1      ------------------------------------------------------------
                                                                                  

consensus_8611#0      AGAATGAAAAGTAATTTTTATT-TTGAAACCGACTTGTATTCGAGATGGAGTATAATAAT 119
consensus_8611#1      --CGAGCTCGGTACCCTTTATCATCGCTAATAATTTGAATTAGATTTTTTATGTAATAGC 58
                           *    ***   *****  * *  *   * *** *** **  *    * *****  

consensus_8611#0      GTTAGTTTTACTTAAAGCGGACA--AAATCCTGGTCCATTTATTGGTTCAGCGTTCCAAC 177
consensus_8611#1      CTTCCAGACGGTGATAATCATCACCAAACTTCATTTGTTTCATGAATTCAATAATCAAA- 117
                       **        * * *     **  ***      *   ** **   ****    ** ** 

consensus_8611#0      CGCGGCTCAGCAT-TCGACAACGAAGTTCTTCCACCCTTGGGACAAAATCCGTTGTGTTT 236
consensus_8611#1      ---GGATTGGAACGCCAACAATGATATTCAACTTCATCCCCACCTAAATGAAACCAGTTA 174
                         ** *  * *   * **** **  ***  *  *        * ****       *** 

consensus_8611#0      GGTGAACCTTCAGTCCATAATCTCTCAGCTACAGCTGAACCTCGAGGCCATGATCGACTA 296
consensus_8611#1      TCAGGAAATACATTGAACAACTCTTTG--TATAATTGTGACACAAAGTTATA-------G 225
                         * *  * ** *  * **    *    ** *  **   * * * *  **         

consensus_8611#0      AACAAATTCGTGTCATCCACATATTCACCCCAGATAGCTGCTTCACCTCCAACAACCAAT 356
consensus_8611#1      GAGAAATTATTGAT-TGGATTGATTGGACCCAGAGTACCA-TCCAGTTC--ACCATTAAT 281
                       * *****  **   *  *   ***   ******   *   * **  **  ** *  ***

consensus_8611#0      TTCGCATCTTCCTTGCTACCTCCGAAATCTCTCGGATCAACGTGATAGTAGTTACGCCAG 416
consensus_8611#1      ATAACAT-TTGGTTAAAACCTCTGGATATCCTTTCCCCCAAGAATTCGTA-TGACCTGGT 339
                       *  *** **  **   ***** * *    **     * * *   * *** * **     

consensus_8611#0      TCATCACCATAAGAAATGTAATTCAGGTACCAAGCAGCTGAGAATAGT--ACTCTATAGC 474
consensus_8611#1      GTATCGAATTCCGGCATT--ATTCTTATTCCTCGTAAACGAGCATAATTTAGTATATATT 397
                        ***    *  *  **   ****   * **  * *   *** *** *  * * ****  

consensus_8611#0      CTGTTTTGGTAACATTTTTCATCACAGATTTCCAATCTGAGTCTTTCCACACATGAATTA 534
consensus_8611#1      TCATATCGTTCGGTGTATAGATTA-AAATATACGGGTGAAATGCTCCCTTTGAGGAAA-G 455
                         * * * *     * *  ** * * ** * *      * *  * **    * ***   

consensus_8611#0      CTGCTGATTTATCACCTCTAAACCCATTTTGAAATATTTCCTGCCAAACAACTGGAGTAA 594
consensus_8611#1      TTTCGGAAACGT----TTCAGATACATAGGGAAAAGATTGATCGTCCACAA-TATGCCAG 510
                       * * **    *    *  * *  ***   ****   **  *     **** *     * 

consensus_8611#0      TATTTCGTCCAGTCGGTTTAACATCACTAATAATTTGAATTAGATTTTTTATGTAATAGC 654
consensus_8611#1      TGA--AGTACATTCATTTT--CACCATTGACA--TTGAATCAAGAAATTT-TTCGATCTC 563
                      *     ** ** **  ***  ** ** * * *  ****** *     *** *   **  *

consensus_8611#0      CTTCCAGACGGTGATAATCATCACCAAACTTCATTTGTTTCATGAATTCAATAATCAAAG 714
consensus_8611#1      TTTTATGAT--TAATAATGTCTAGATGTATCCATTA------------------------ 597
                       **   **   * *****    *      * ****                         

consensus_8611#0      GATTGGAACNCCAAC 729
consensus_8611#1      ---------------