These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1170 fasta sequence [GGATCCTGGGCAAATTTTCCAAGGTTGGATTAAAAGGCATGCTGTATCTACCAGTAATCAGTCCAGTATATACAGACTACTACTCACTTCATCCCTTCATAGTCTAAAAGCGTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTCGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAG-ATTGCTTTGTGTTTTTTCGTTCTACTATAACTNTACTTTTC-ATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGGTCTGNNGTACTT-CTTGNATTATCA-TTNTACTCATAGNAATTGNNT-CTTTNCT-NCTTA-CAT-ATCAATCATCTATG--TTTNG-TTTTTATGGTT--A-TTATAATAAAAACTATTTT-CGTCG--AAAAA-CCA-GAATATATAGCTTCATTCGTCTAGTNATACACGNCACATGGTATAACTAATAACTAGTATAGTACGAG] [-] EMBL CD066315 [GGATCCTGGGCAAATTTTCCAAGGTTGGATTAAAAGGCATGCTGTATCTACCAGTAATCAGTCCAGTATATACAGACTACTACTCACTTCATCCCTTCATAGTCTAAAAGCGTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTCGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCC ] [-] EMBL CD066316 [ AGTCCAGTATATACAGACTANTACTCACTTCATCCCTTCATAGTCTAANAGCGTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAAACCTGCTTTTTTACCTATGAAACATTCGAACAATTCATCTCCAAAATAGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAAATGAATCATCACCATCCAACTTTCCTCC ] [+] EMBL CD080250 [ TCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTT ATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAGAATTGCTTTGTGTTTTTTCGTTCTACTATAACTNTACTTTTC ATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGGTCTGNNGTACTT CTTGNATTATCA TTNTACTCATAGNAATTGNNT CTTT CT NCTTA CAT ATCAATCATC ATG TTTNG TTTTTAT GTT A TTAT AT AAAACTATTTT CGTCG AAAAA CCA GAATATATAGCTTCATTCGTCTAGTNATACACGNCACATGGTATAACTAATAACTAGTATAGTACGAG] [+] EMBL CD082464 [ ATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAG ATTGCTNTGTGTTTTTTCGTTCTACTATAACTNTACTTTTC ATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGNTACATTGGTCTGNNGTACTTNCTGGNNATATCA TNNTACTCATAG AANTGGNTNCTTTNCTNNCTAT CAT ATCAATCATCTATGGNTTTGT TTTTTATGGNTAAA TTATAATAAAAACTATTTTNCGTCGNAAAAAACCCANGAATtn ] [-] EMBL CD076063 [ CAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAG ATTGCTTTGTGTTTTTTCGTTCTACTATAACTTTACTTTTCAATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGTTCTGTGTTACTT CTTGTATTATCATTTTTACTCATAGTAATTGTTT CTTTCCT CCTTATCATAATCAATCATCTATG TTTTGTTTTTTATGTTT ATTTATAATAAAAACTAT ] consensusID : consensus_8614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [GTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTNGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTTGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGGATAATATCAAAGAATCTGATCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATT] [-] EMBL CD158121 [GTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTNGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTTGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGGATAATATCAAAGAATCTGATCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATT] consensusID : consensus_8614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [CCTGNCTTCAGTTGATCCATNACTGNAAATATGAAACAGAAAATAACATTCTACTGCCAGCTCATTCTGTGATCAACGGTAATTTAATATAATGTTCTCTATTGATTAAAATAAGTTTGTGGTATACTTCCAGCGTCGTACATNATTTGTTACCATCTNGANCTGAAAAATTTATGANAGTCTAACTGTATCGTCATTAAT] [+] EMBL SM747 [CCTGNCTTCAGTTGATCCATNACTGNAAATATGAAACAGAAAATAACATTCTACTGCCAGCTCATTCTGTGATCAACGGTAATTTAATATAATGTTCTCTATTGATTAAAATAAGTTTGTGGTATACTTCCAGCGTCGTACATNATTTGTTACCATCTNGANCTGAAAAATTTATGANAGTCTAACTGTATCGTCATTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8614#0 GGATCCTGGGCAAATTTTCCAAGGTTGGATTAAAAGGCATGCTGTATCTACCAGTAATCA 60 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 GTCCAGTATATACAGACTACTACTCACTTCATCCCTTCATAGTCTAAAAGCGTTTGAACA 120 consensus_8614#1 ---------------------------------------------------GTTTGAACA 9 consensus_8614#2 -----------------------------------------------------------C 1 consensus_8614#0 CCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAA 180 consensus_8614#1 CCGACAACGTATAGTCAGTTCATCAAAATCTTNGGAACAAAATATATCACATACTCAAAA 69 consensus_8614#2 CTGNCTTCAGTTGATCCATNACTGNAAATA--TGAAACAGAAAATAACATTCTACTGCCA 59 * * * * * ** * * **** * **** ** *** ** * consensus_8614#0 ACCTGCTTTCTTACCTATGAAACATTCGAACAATTCATCTCCAAAATCGATTTCACCTTC 240 consensus_8614#1 ACCTGCTTTCTTACCTATGAAACATTTGAACAATTCATCTCCAAAATCGATTTCACCTTC 129 consensus_8614#2 GCTCATTCTGTGATCAACGGTAATTTAATATAATGT-TCTCTA---TTGATT-------- 107 * * * * * * * * * ** * *** **** * * **** consensus_8614#0 ACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGT 300 consensus_8614#1 ACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGT 189 consensus_8614#2 --AAAATAAGTTTGTGGTATACTTC-CAGCGTCGTACATNATTTGTTACCATCTNGANCT 164 *** *** * * * **** ***** * * ** * *** *** * * consensus_8614#0 TACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAA 360 consensus_8614#1 TACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAA 249 consensus_8614#2 GAAAAAT---TTATGANAGTCTAACTGTATCGTCATTAAT-------------------- 201 * ** * * ** * ** **** * * ** consensus_8614#0 ATATGATTTACAG---------------------CCTTACATTCATCCTGCTGTTCACGC 399 consensus_8614#1 ATATGATTTACAGGATAATATCAAAGAATCTGATCCTTACATTCATCCTGCTGTTCACGC 309 consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 TTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTT 459 consensus_8614#1 TTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTT 369 consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 AAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAA 519 consensus_8614#1 AAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATT--------------------- 408 consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 AATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGA 579 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 TAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAAT 639 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 GAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAA 699 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 CCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAA 759 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 TAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTT 819 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 TTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAGATTGCTTT 879 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 GTGTTTTTTCGTTCTACTATAACTNTACTTTTCATTACATAAATTTATGTTATTATAATG 939 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 AATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGGTCTGNNGTACTTCTTGNATT 999 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 ATCATTNTACTCATAGNAATTGNNTCTTTNCTNCTTACATATCAATCATCTATGTTTNGT 1059 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 TTTTATGGTTATTATAATAAAAACTATTTTCGTCGAAAAACCAGAATATATAGCTTCATT 1119 consensus_8614#1 ------------------------------------------------------------ consensus_8614#2 ------------------------------------------------------------ consensus_8614#0 CGTCTAGTNATACACGNCACATGGTATAACTAATAACTAGTATAGTACGAG 1170 consensus_8614#1 --------------------------------------------------- consensus_8614#2 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||