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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1170 fasta sequence
[GGATCCTGGGCAAATTTTCCAAGGTTGGATTAAAAGGCATGCTGTATCTACCAGTAATCAGTCCAGTATATACAGACTACTACTCACTTCATCCCTTCATAGTCTAAAAGCGTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTCGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAG-ATTGCTTTGTGTTTTTTCGTTCTACTATAACTNTACTTTTC-ATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGGTCTGNNGTACTT-CTTGNATTATCA-TTNTACTCATAGNAATTGNNT-CTTTNCT-NCTTA-CAT-ATCAATCATCTATG--TTTNG-TTTTTATGGTT--A-TTATAATAAAAACTATTTT-CGTCG--AAAAA-CCA-GAATATATAGCTTCATTCGTCTAGTNATACACGNCACATGGTATAACTAATAACTAGTATAGTACGAG]
[-] EMBL CD066315 [GGATCCTGGGCAAATTTTCCAAGGTTGGATTAAAAGGCATGCTGTATCTACCAGTAATCAGTCCAGTATATACAGACTACTACTCACTTCATCCCTTCATAGTCTAAAAGCGTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTCGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCC ]
[-] EMBL CD066316 [ AGTCCAGTATATACAGACTANTACTCACTTCATCCCTTCATAGTCTAANAGCGTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAAACCTGCTTTTTTACCTATGAAACATTCGAACAATTCATCTCCAAAATAGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAAATGAATCATCACCATCCAACTTTCCTCC ]
[+] EMBL CD080250 [ TCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTT ATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAGAATTGCTTTGTGTTTTTTCGTTCTACTATAACTNTACTTTTC ATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGGTCTGNNGTACTT CTTGNATTATCA TTNTACTCATAGNAATTGNNT CTTT CT NCTTA CAT ATCAATCATC ATG TTTNG TTTTTAT GTT A TTAT AT AAAACTATTTT CGTCG AAAAA CCA GAATATATAGCTTCATTCGTCTAGTNATACACGNCACATGGTATAACTAATAACTAGTATAGTACGAG]
[+] EMBL CD082464 [ ATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAG ATTGCTNTGTGTTTTTTCGTTCTACTATAACTNTACTTTTC ATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGNTACATTGGTCTGNNGTACTTNCTGGNNATATCA TNNTACTCATAG AANTGGNTNCTTTNCTNNCTAT CAT ATCAATCATCTATGGNTTTGT TTTTTATGGNTAAA TTATAATAAAAACTATTTTNCGTCGNAAAAAACCCANGAATtn ]
[-] EMBL CD076063 [ CAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAG ATTGCTTTGTGTTTTTTCGTTCTACTATAACTTTACTTTTCAATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGTTCTGTGTTACTT CTTGTATTATCATTTTTACTCATAGTAATTGTTT CTTTCCT CCTTATCATAATCAATCATCTATG TTTTGTTTTTTATGTTT ATTTATAATAAAAACTAT ]
consensusID : consensus_8614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[GTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTNGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTTGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGGATAATATCAAAGAATCTGATCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATT]
[-] EMBL CD158121 [GTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTNGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTTGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGGATAATATCAAAGAATCTGATCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATT]
consensusID : consensus_8614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence
[CCTGNCTTCAGTTGATCCATNACTGNAAATATGAAACAGAAAATAACATTCTACTGCCAGCTCATTCTGTGATCAACGGTAATTTAATATAATGTTCTCTATTGATTAAAATAAGTTTGTGGTATACTTCCAGCGTCGTACATNATTTGTTACCATCTNGANCTGAAAAATTTATGANAGTCTAACTGTATCGTCATTAAT]
[+] EMBL SM747 [CCTGNCTTCAGTTGATCCATNACTGNAAATATGAAACAGAAAATAACATTCTACTGCCAGCTCATTCTGTGATCAACGGTAATTTAATATAATGTTCTCTATTGATTAAAATAAGTTTGTGGTATACTTCCAGCGTCGTACATNATTTGTTACCATCTNGANCTGAAAAATTTATGANAGTCTAACTGTATCGTCATTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8614#0 GGATCCTGGGCAAATTTTCCAAGGTTGGATTAAAAGGCATGCTGTATCTACCAGTAATCA 60
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 GTCCAGTATATACAGACTACTACTCACTTCATCCCTTCATAGTCTAAAAGCGTTTGAACA 120
consensus_8614#1 ---------------------------------------------------GTTTGAACA 9
consensus_8614#2 -----------------------------------------------------------C 1
consensus_8614#0 CCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAA 180
consensus_8614#1 CCGACAACGTATAGTCAGTTCATCAAAATCTTNGGAACAAAATATATCACATACTCAAAA 69
consensus_8614#2 CTGNCTTCAGTTGATCCATNACTGNAAATA--TGAAACAGAAAATAACATTCTACTGCCA 59
* * * * * ** * * **** * **** ** *** ** *
consensus_8614#0 ACCTGCTTTCTTACCTATGAAACATTCGAACAATTCATCTCCAAAATCGATTTCACCTTC 240
consensus_8614#1 ACCTGCTTTCTTACCTATGAAACATTTGAACAATTCATCTCCAAAATCGATTTCACCTTC 129
consensus_8614#2 GCTCATTCTGTGATCAACGGTAATTTAATATAATGT-TCTCTA---TTGATT-------- 107
* * * * * * * * * ** * *** **** * * ****
consensus_8614#0 ACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGT 300
consensus_8614#1 ACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGT 189
consensus_8614#2 --AAAATAAGTTTGTGGTATACTTC-CAGCGTCGTACATNATTTGTTACCATCTNGANCT 164
*** *** * * * **** ***** * * ** * *** *** * *
consensus_8614#0 TACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAA 360
consensus_8614#1 TACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAA 249
consensus_8614#2 GAAAAAT---TTATGANAGTCTAACTGTATCGTCATTAAT-------------------- 201
* ** * * ** * ** **** * * **
consensus_8614#0 ATATGATTTACAG---------------------CCTTACATTCATCCTGCTGTTCACGC 399
consensus_8614#1 ATATGATTTACAGGATAATATCAAAGAATCTGATCCTTACATTCATCCTGCTGTTCACGC 309
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 TTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTT 459
consensus_8614#1 TTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTT 369
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 AAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAA 519
consensus_8614#1 AAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATT--------------------- 408
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 AATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGA 579
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 TAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAAT 639
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 GAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAA 699
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 CCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAA 759
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 TAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTT 819
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 TTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAGATTGCTTT 879
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 GTGTTTTTTCGTTCTACTATAACTNTACTTTTCATTACATAAATTTATGTTATTATAATG 939
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 AATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGGTCTGNNGTACTTCTTGNATT 999
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 ATCATTNTACTCATAGNAATTGNNTCTTTNCTNCTTACATATCAATCATCTATGTTTNGT 1059
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 TTTTATGGTTATTATAATAAAAACTATTTTCGTCGAAAAACCAGAATATATAGCTTCATT 1119
consensus_8614#1 ------------------------------------------------------------
consensus_8614#2 ------------------------------------------------------------
consensus_8614#0 CGTCTAGTNATACACGNCACATGGTATAACTAATAACTAGTATAGTACGAG 1170
consensus_8614#1 ---------------------------------------------------
consensus_8614#2 ---------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||