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Schistosoma mansoni
cluster # 8614 cluster # 8614       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8614#0 length = 1170 sequences # 5  
consensus_8614#1 length = 408 sequences # 1  
consensus_8614#2 length = 201 sequences # 1  

consensusID : consensus_8614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1170
fasta sequence
                              [GGATCCTGGGCAAATTTTCCAAGGTTGGATTAAAAGGCATGCTGTATCTACCAGTAATCAGTCCAGTATATACAGACTACTACTCACTTCATCCCTTCATAGTCTAAAAGCGTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTCGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAG-ATTGCTTTGTGTTTTTTCGTTCTACTATAACTNTACTTTTC-ATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGGTCTGNNGTACTT-CTTGNATTATCA-TTNTACTCATAGNAATTGNNT-CTTTNCT-NCTTA-CAT-ATCAATCATCTATG--TTTNG-TTTTTATGGTT--A-TTATAATAAAAACTATTTT-CGTCG--AAAAA-CCA-GAATATATAGCTTCATTCGTCTAGTNATACACGNCACATGGTATAACTAATAACTAGTATAGTACGAG]

[-] EMBL CD066315             [GGATCCTGGGCAAATTTTCCAAGGTTGGATTAAAAGGCATGCTGTATCTACCAGTAATCAGTCCAGTATATACAGACTACTACTCACTTCATCCCTTCATAGTCTAAAAGCGTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTCGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD066316             [                                                           AGTCCAGTATATACAGACTANTACTCACTTCATCCCTTCATAGTCTAANAGCGTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAAACCTGCTTTTTTACCTATGAAACATTCGAACAATTCATCTCCAAAATAGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAAATGAATCATCACCATCCAACTTTCCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD080250             [                                                                                                                                                                                                                                  TCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTT   ATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAGAATTGCTTTGTGTTTTTTCGTTCTACTATAACTNTACTTTTC ATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGGTCTGNNGTACTT CTTGNATTATCA TTNTACTCATAGNAATTGNNT CTTT CT NCTTA CAT ATCAATCATC ATG  TTTNG TTTTTAT GTT  A TTAT AT AAAACTATTTT CGTCG  AAAAA CCA GAATATATAGCTTCATTCGTCTAGTNATACACGNCACATGGTATAACTAATAACTAGTATAGTACGAG]
[+] EMBL CD082464             [                                                                                                                                                                                                                                                            ATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAG ATTGCTNTGTGTTTTTTCGTTCTACTATAACTNTACTTTTC ATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGNTACATTGGTCTGNNGTACTTNCTGGNNATATCA TNNTACTCATAG AANTGGNTNCTTTNCTNNCTAT CAT ATCAATCATCTATGGNTTTGT TTTTTATGGNTAAA TTATAATAAAAACTATTTTNCGTCGNAAAAAACCCANGAATtn                                                              ]
[-] EMBL CD076063             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAATAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAG ATTGCTTTGTGTTTTTTCGTTCTACTATAACTTTACTTTTCAATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGTTCTGTGTTACTT CTTGTATTATCATTTTTACTCATAGTAATTGTTT CTTTCCT CCTTATCATAATCAATCATCTATG  TTTTGTTTTTTATGTTT  ATTTATAATAAAAACTAT                                                                                         ]


>consensus_8614#0 GGATCCTGGGCAAATTTTCCAAGGTTGGATTAAAAGGCATGCTGTATCTACCAGTAATCA GTCCAGTATATACAGACTACTACTCACTTCATCCCTTCATAGTCTAAAAGCGTTTGAACA CCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAA ACCTGCTTTCTTACCTATGAAACATTCGAACAATTCATCTCCAAAATCGATTTCACCTTC ACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGT TACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAA ATATGATTTACAGCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGT AGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCT GCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAAAATAACATTTCTACTGCCAGC TCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGATAATTATTATGGTAGTTCAAA TTCCATTTTGACTATGCTACAATTAGATTGTGAAATAATGAATGCTACACTATTACAATC ACCTGTATATAATTTTCATGAAAAGCACACACCTAATAACCATTAATTACTAAGGTAACA CCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAATAATAATAATAATCATTATTT GTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTTTTAATGTGTTCATTGTTAAAA ATTTCGTCTCTTATTTCATCGAATAAACAAGATTGCTTTGTGTTTTTTCGTTCTACTATA ACTNTACTTTTCATTACATAAATTTATGTTATTATAATGAATAAGTCTATGTCCATTTAT TTATGATCAGTTACATTGGTCTGNNGTACTTCTTGNATTATCATTNTACTCATAGNAATT GNNTCTTTNCTNCTTACATATCAATCATCTATGTTTNGTTTTTATGGTTATTATAATAAA AACTATTTTCGTCGAAAAACCAGAATATATAGCTTCATTCGTCTAGTNATACACGNCACA TGGTATAACTAATAACTAGTATAGTACGAG



consensusID : consensus_8614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence
                              [GTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTNGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTTGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGGATAATATCAAAGAATCTGATCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATT]

[-] EMBL CD158121             [GTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTNGGAACAAAATATATCACATACTCAAAAACCTGCTTTCTTACCTATGAAACATTTGAACAATTCATCTCCAAAATCGATTTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAAATATGATTTACAGGATAATATCAAAGAATCTGATCCTTACATTCATCCTGCTGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATT]


>consensus_8614#1 GTTTGAACACCGACAACGTATAGTCAGTTCATCAAAATCTTNGGAACAAAATATATCACA TACTCAAAAACCTGCTTTCTTACCTATGAAACATTTGAACAATTCATCTCCAAAATCGAT TTCACCTTCACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTAT TCTAAATGTTACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAAT ATTGAGAAAATATGATTTACAGGATAATATCAAAGAATCTGATCCTTACATTCATCCTGC TGTTCACGCTTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACAT TGTTTTTTTAAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATT



consensusID : consensus_8614#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence
                              [CCTGNCTTCAGTTGATCCATNACTGNAAATATGAAACAGAAAATAACATTCTACTGCCAGCTCATTCTGTGATCAACGGTAATTTAATATAATGTTCTCTATTGATTAAAATAAGTTTGTGGTATACTTCCAGCGTCGTACATNATTTGTTACCATCTNGANCTGAAAAATTTATGANAGTCTAACTGTATCGTCATTAAT]

[+] EMBL SM747                [CCTGNCTTCAGTTGATCCATNACTGNAAATATGAAACAGAAAATAACATTCTACTGCCAGCTCATTCTGTGATCAACGGTAATTTAATATAATGTTCTCTATTGATTAAAATAAGTTTGTGGTATACTTCCAGCGTCGTACATNATTTGTTACCATCTNGANCTGAAAAATTTATGANAGTCTAACTGTATCGTCATTAAT]


>consensus_8614#2 CCTGNCTTCAGTTGATCCATNACTGNAAATATGAAACAGAAAATAACATTCTACTGCCAG CTCATTCTGTGATCAACGGTAATTTAATATAATGTTCTCTATTGATTAAAATAAGTTTGT GGTATACTTCCAGCGTCGTACATNATTTGTTACCATCTNGANCTGAAAAATTTATGANAG TCTAACTGTATCGTCATTAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8614#0      GGATCCTGGGCAAATTTTCCAAGGTTGGATTAAAAGGCATGCTGTATCTACCAGTAATCA 60
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      GTCCAGTATATACAGACTACTACTCACTTCATCCCTTCATAGTCTAAAAGCGTTTGAACA 120
consensus_8614#1      ---------------------------------------------------GTTTGAACA 9
consensus_8614#2      -----------------------------------------------------------C 1
                                                                                  

consensus_8614#0      CCGACAACGTATAGTCAGTTCATCAAAATCTTTGGAACAAAATATATCACATACTCAAAA 180
consensus_8614#1      CCGACAACGTATAGTCAGTTCATCAAAATCTTNGGAACAAAATATATCACATACTCAAAA 69
consensus_8614#2      CTGNCTTCAGTTGATCCATNACTGNAAATA--TGAAACAGAAAATAACATTCTACTGCCA 59
                      * * *  *   *  **  *   *  ****    * **** ** *** **          *

consensus_8614#0      ACCTGCTTTCTTACCTATGAAACATTCGAACAATTCATCTCCAAAATCGATTTCACCTTC 240
consensus_8614#1      ACCTGCTTTCTTACCTATGAAACATTTGAACAATTCATCTCCAAAATCGATTTCACCTTC 129
consensus_8614#2      GCTCATTCTGTGATCAACGGTAATTTAATATAATGT-TCTCTA---TTGATT-------- 107
                       *    * * * * * * *  *  **   * ***   **** *   * ****        

consensus_8614#0      ACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGT 300
consensus_8614#1      ACGAAAGGAGTCATTAGAACACTTTTCAGCGAGGAAAATTAGCAGTTTTATTCTAAATGT 189
consensus_8614#2      --AAAATAAGTTTGTGGTATACTTC-CAGCGTCGTACATNATTTGTTACCATCTNGANCT 164
                         ***  ***   * * * ****  *****  * * ** *   ***    ***  *  *

consensus_8614#0      TACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAA 360
consensus_8614#1      TACAACTGAATCATCACCATCCAACTTTCCTCCACCTCATCGTCCTGCAATATTGAGAAA 249
consensus_8614#2      GAAAAAT---TTATGANAGTCTAACTGTATCGTCATTAAT-------------------- 201
                       * ** *   * ** *   ** **** *        * **                    

consensus_8614#0      ATATGATTTACAG---------------------CCTTACATTCATCCTGCTGTTCACGC 399
consensus_8614#1      ATATGATTTACAGGATAATATCAAAGAATCTGATCCTTACATTCATCCTGCTGTTCACGC 309
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      TTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTT 459
consensus_8614#1      TTTTGAGAAATTATTCAATGTAGTTAATCGTCGCAATGATACAGCATACATTGTTTTTTT 369
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      AAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATTACCTGCAAATATGAAACAGAA 519
consensus_8614#1      AAACCGGGATCATTTCCTCCTGCCTTCAGTTGATCCATT--------------------- 408
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      AATAACATTTCTACTGCCAGCTCATTCTGTGATCAACGGATCGTCTGTTGATGGTGAAGA 579
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      TAATTATTATGGTAGTTCAAATTCCATTTTGACTATGCTACAATTAGATTGTGAAATAAT 639
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      GAATGCTACACTATTACAATCACCTGTATATAATTTTCATGAAAAGCACACACCTAATAA 699
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      CCATTAATTACTAAGGTAACACCTTTTTTATCCAACTTTTTCTGCTTTCATTTATAATAA 759
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      TAATAATAATAATCATTATTTGTATATTTTTTTTCCTTCAGTGTTTTCATTATAAACTTT 819
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      TTAATGTGTTCATTGTTAAAAATTTCGTCTCTTATTTCATCGAATAAACAAGATTGCTTT 879
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      GTGTTTTTTCGTTCTACTATAACTNTACTTTTCATTACATAAATTTATGTTATTATAATG 939
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      AATAAGTCTATGTCCATTTATTTATGATCAGTTACATTGGTCTGNNGTACTTCTTGNATT 999
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      ATCATTNTACTCATAGNAATTGNNTCTTTNCTNCTTACATATCAATCATCTATGTTTNGT 1059
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      TTTTATGGTTATTATAATAAAAACTATTTTCGTCGAAAAACCAGAATATATAGCTTCATT 1119
consensus_8614#1      ------------------------------------------------------------
consensus_8614#2      ------------------------------------------------------------
                                                                                  

consensus_8614#0      CGTCTAGTNATACACGNCACATGGTATAACTAATAACTAGTATAGTACGAG 1170
consensus_8614#1      ---------------------------------------------------
consensus_8614#2      ---------------------------------------------------
                                                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)