cluster # 8616

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Schistosoma mansoni
cluster # 8616 cluster # 8616 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8616#0 length = 464 sequences # 6

consensus_8616#1 length = 221 sequences # 1

consensusID : consensus_8616#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 464
fasta sequence

                              [GTACATTGAATATTGGACGGTCATTCTCTTCGTGGCAGAGTACCTAACCTGACAGTTGGTAATAATGTCTAAGCTGATTGAACTGAAACAGGATGGTGACTTGGAAAGTTTGCTAGAGCAACATAAGAATAAGTTGGTTGTGGTTGATTTCTTTGCCACATGGTGTGGCCCGTGTAAAACCATAGCTCCTCTGTTCAAAGAATTAAGCGAGAAGTATGATGCAATTTTCGTGAAAGTTGATGTCGACAAACTTGAAGAGACCGCCAGAAAGTACAATATCTCAGCTATGCCAACGTTTATAGCCATTAAAAATGGTGAAAAAGTCGGGGATGTTGTTGGGGCTTCTATTGCTAAAGTTGAGGACATGATCAAGAAATTTATTTAATATCTATGATCTCGTGAACCTTTCGATATGATTGCATAAACGTGTATATCTGGACGTTTCTATTTGAATGATAAATTGT]

[+] EMBL CD188708             [GTACATTGAATATTGGACGGTCATTCTCTTCGTGGCAGAGTACCTAACCTGACAGTTGGTAATAATGTCTAAGCTGATTGAACTGAAACAGGATGGTGACTTGGAAAGTTTGCTAGAGCAACATAAGAATAAGTTGGTTGTGGTTGATTTCTTTGCCACATGGTGTGGCCCGTGTAAAACCATAGCTCCTCTGTTCAAAGAATTAAGCGAGAAGTATGATGCAATTTTCGTGAAAGTTGATGTCGACAAACTTGAAGAGACCGCCAGAAAGTACAATATCTCAGCTATGCCAACGTTTATAGCCATTAAAAATGGTGAAAAAGTCGGGGATGTTGTTGGGGCTTCTATTGCTAAAGTTGAGGACATGATCAAGAAATTTATTTAATATCTATGATCTCGTGAACCTTTCGATATGATTGCATA                                         ]
[+] EMBL CD132749             [                              CGTGGCAGAGTACCTAACCTGACAGTTGGTAATAATGTCTAAGCTGATTGAACTGAAACAGGATGGTGACTTGGAAAGTTTGCTAGAGCAACATAAGAATAAGTTGGTTGTGGTTGATTTCTTTGCCACATGGTGTGGCCCGTGTAAAACCATAGCTCCTCTGTTCAAAGAATTAAGCGAGAAGTATGATGCAATTTTCGTGAAAGTTGATGTCGACAAACTTGAAGAGACCGCCAGAAAGTACAATATCTCAGCTATGCCAACGTTTATAGCCATTAAAAATGGTGAAAAAGTCGGGGATGTTGTTGGGGCTTCTATTGCTAAAGTTGAGGACATGATCAAGAAATCTATTTAATATCTATGATCTCGTGAACCTTTCGATATGATTGCATA                                         ]
[+] EMBL CD191689             [                                          CCTAACCTGACAGTTGGTAATAATGTCTAAGCTGATTGAACTGAAACAGGATGGTGACTTGGAAAGTTTGCTAGAGCAACATAAGAATAAGTTGGTTGTGGTTGATTTCTTTGCCACATGGTGTGGCCCGTGTAAAACCATAGCTCCTCTGTTCAAAGAATTAAGCGAGAAGTATGATGCAATTTTCGTGAAAGTTGATGTCGACAAACTTGAAGAGACCGCCAGAAAGTACAATATCTCAGCTATGCCAACGTTTATAGCCATTAAAAATGGTGAAAAAGTCGGGGATGTTGTTGGGGCTTCTATTGCTAAAGTTGAGGACATGATCAAGAAATTTATTTAATATCTATGATCTCGTGAACCTTTCGATATGATTGCATAAACG                                     ]
[-] EMBL CD188512             [                                           CTAACCTGACAGTTGGTAATAATGTCTAAGCTGATTGAACTGAAACAGGATGGTGACTTGGAAAGTTTGCTAGAGCAACATAAGAATAAGTTGGTTGTGGTTGATTTCTTTGCCACATGGTGTGGCCCGTGTAAAACCATAGCTCCTCTGTTCAAAGAATTAAGCGAGAAGTATGATGCAATTTTCGTGAAAGTTGATGTCGACAAACTTGAAGAGACCGCCGGAAAGTACAATATCTCAGCTATGCCAAC                                                                                                                                                                          ]
[+] EMBL AF473536             [                                                CTGACAGTTGGTAATAATGTCTAAGCTGATTGAACTGAAACAGGATGGTGACTTGGAAAGTTTGCTAGAGCAACATAAGAATAAGTTGGTTGTGGTTGATTTTTTTGCCACATGGTGTGGCCCGTGTAAAACCATAGCTCCTCTGTTCAAAGAATTAAGCGAGAAGTATGATGCAATTTTCGTGAAAGTTGATGTCGACAAACTTGAAGAGACCGCCAGAAAGTACAATATCTCAGCTATGCCAACGTTTATAGCCATTAAAAATGGTGAAAAAGTCGGGGATGTTGTTGGGGCTTCTATTGCTAAAGTTGAGGACATGATCAAGAAATTTATTTAATATCTATGATCTCGTGAACCTTTCGATATGATTGCATAAACGTGTATATCTGGACGTTTCTATTTGAATGATAAATT  ]
[+] EMBL AI977193             [                                                    CAGTTGGTAATAATGTCTAAGCTGATTGAACTGAAACAGGATGGTGACTTGGAAAGTTTGCTAGAGCAACATAAGAATAAGTTGGTTGTGGTTGATTTCTTTGCCACATGGTGTGGCCCGTGTAAAACCATAGCTCCTCTGTTCAAAGAATTAAGCGAGAAGTATGATGCAATTTTCGTGAAAGTTGATGTCGACAAACTTGAAGAGACCGCCAGAAAGTACAATATCTCAGCTATGCCAACGTTTATAGCCATTAAAAATGGTGAAAAAGTCGAGGATGTTGTTGGGGCTTCTATTGCTAAAGTTGAGGACATGATCAAGAAATTTATTTAATATCTATGATCTCGTGAACCTTTCGATATGATTGCATAAACGTGTATATCTGGACGTTTCTATTTGAATGATAAATTGT]




>consensus_8616#0
GTACATTGAATATTGGACGGTCATTCTCTTCGTGGCAGAGTACCTAACCTGACAGTTGGT
AATAATGTCTAAGCTGATTGAACTGAAACAGGATGGTGACTTGGAAAGTTTGCTAGAGCA
ACATAAGAATAAGTTGGTTGTGGTTGATTTCTTTGCCACATGGTGTGGCCCGTGTAAAAC
CATAGCTCCTCTGTTCAAAGAATTAAGCGAGAAGTATGATGCAATTTTCGTGAAAGTTGA
TGTCGACAAACTTGAAGAGACCGCCAGAAAGTACAATATCTCAGCTATGCCAACGTTTAT
AGCCATTAAAAATGGTGAAAAAGTCGGGGATGTTGTTGGGGCTTCTATTGCTAAAGTTGA
GGACATGATCAAGAAATTTATTTAATATCTATGATCTCGTGAACCTTTCGATATGATTGC
ATAAACGTGTATATCTGGACGTTTCTATTTGAATGATAAATTGT

consensusID : consensus_8616#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [ATAATGTCTAAGCTGATTGAACTGAAATAGGATGGTGACATGGAAAGTTTGCTAGAGCAACATAAGAATAAGTTGGTTGTGGTTGATTTTTTTGCCACATGGTGTGGCCCGTGTAAAACCATAGCTCCTCTGTTCAAAGAATTAAGCGAGTTGTATATATCAATTTTCGTGAAAGTTGATGTGCACAACTTGCCGAGACGCCAGAAGTACATTTCCGCTAC]

[+] EMBL AA952846             [ATAATGTCTAAGCTGATTGAACTGAAATAGGATGGTGACATGGAAAGTTTGCTAGAGCAACATAAGAATAAGTTGGTTGTGGTTGATTTTTTTGCCACATGGTGTGGCCCGTGTAAAACCATAGCTCCTCTGTTCAAAGAATTAAGCGAGTTGTATATATCAATTTTCGTGAAAGTTGATGTGCACAACTTGCCGAGACGCCAGAAGTACATTTCCGCTAC]




>consensus_8616#1
ATAATGTCTAAGCTGATTGAACTGAAATAGGATGGTGACATGGAAAGTTTGCTAGAGCAA
CATAAGAATAAGTTGGTTGTGGTTGATTTTTTTGCCACATGGTGTGGCCCGTGTAAAACC
ATAGCTCCTCTGTTCAAAGAATTAAGCGAGTTGTATATATCAATTTTCGTGAAAGTTGAT
GTGCACAACTTGCCGAGACGCCAGAAGTACATTTCCGCTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8616#0      GTACATTGAATATTGGACGGTCATTCTCTTCGTGGCAGAGTACCTAACCTGACAGTTGGT 60
consensus_8616#1      ------------------------------------------------------------
                                                                                  

consensus_8616#0      AATAATGTCTAAGCTGATTGAACTGAAACAGGATGGTGACTTGGAAAGTTTGCTAGAGCA 120
consensus_8616#1      -ATAATGTCTAAGCTGATTGAACTGAAATAGGATGGTGACATGGAAAGTTTGCTAGAGCA 59
                       *************************** *********** *******************

consensus_8616#0      ACATAAGAATAAGTTGGTTGTGGTTGATTTCTTTGCCACATGGTGTGGCCCGTGTAAAAC 180
consensus_8616#1      ACATAAGAATAAGTTGGTTGTGGTTGATTTTTTTGCCACATGGTGTGGCCCGTGTAAAAC 119
                      ****************************** *****************************

consensus_8616#0      CATAGCTCCTCTGTTCAAAGAATTAAGCGAGAAGTATGATGCAATTTTCGTGAAAGTTGA 240
consensus_8616#1      CATAGCTCCTCTGTTCAAAGAATTAAGCGAGTTGTATATATCAATTTTCGTGAAAGTTGA 179
                      *******************************  ****    *******************

consensus_8616#0      TGTCGACAAACTTGAAGAGACCGCCAGAAAGTACAATATCTCAGCTATGCCAACGTTTAT 300
consensus_8616#1      TGTGCACAA-CTTGCCGAGAC-GCCAGAA-GTACA---TTTCCGCTAC------------ 221
                      ***  **** ****  ***** ******* *****   * ** ****             

consensus_8616#0      AGCCATTAAAAATGGTGAAAAAGTCGGGGATGTTGTTGGGGCTTCTATTGCTAAAGTTGA 360
consensus_8616#1      ------------------------------------------------------------
                                                                                  

consensus_8616#0      GGACATGATCAAGAAATTTATTTAATATCTATGATCTCGTGAACCTTTCGATATGATTGC 420
consensus_8616#1      ------------------------------------------------------------
                                                                                  

consensus_8616#0      ATAAACGTGTATATCTGGACGTTTCTATTTGAATGATAAATTGT 464
consensus_8616#1      --------------------------------------------