cluster # 8620

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Schistosoma mansoni
cluster # 8620 cluster # 8620 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8620#0 length = 631 sequences # 4
consensus_8620#1 length = 480 sequences # 1

consensus_8620#2 length = 431 sequences # 1
consensus_8620#3 length = 141 sequences # 1

consensusID : consensus_8620#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 631
fasta sequence

                              [GCAGCGTCTGTAGATGATTGGCCGAAACTCGTGATTTCAGAAAGTACGCACGCAGATGTCTTTGTGCAGACAGAACTATCATGAAGAGTGTGAAGCTGGTGTTAATAAGCAAATTAATATGGAACTATATGCCAGCTATGTTTATATGACTATGGCTTTTCATTTTAATCGTGATGACGTTGCGCTGAACGGTTTCTATAAATTCTTCTTAAACGAGTCTGAAGAGGAGCGACAACATGCGATAAAGTTAATGACTTATCAAAATATGCGGGGTGGTCGGATTGTGTTACAAGATATATCGGCACCTCCCCAACTCTCATGGAATTCGGGACTTCATGCTATGCAGGATGCTCTTGACTTGGAGAAGAAGGTCAATCAGAGTCTGATGGAGTTAGTGGCTGTTGGTGAAAGGCACAGAGATACACACTTTTGCGATTTCATTAATAATGAATATTTGGAGATTCAGGTACAGTCTATGAAAAAGCTTTCCGATTACATTACTAATCTCATTCGTGTTGGCAATGGTCTTGGGGAATACACCTTCGACAAAGAAACCCTACATGGCGAGAGTCAATAATTTTGTATTAGCATGTTGTTATAAACTGTCCTCGAGCTACAATTAATTATATTT]

[-] EMBL CD164152             [GCAGCGTCTGTAGATGATTGGCCGAAACTCGTGATTTCAGAAAGTACGCACGCAGATGTCTTTGTGCAGACAGAACTATCATGAAGAGTGTGAAGCTGGTGTTAATAAGCAAATTAATATGGAACTATATGCCAGCTATGTTTATATGACTATGGCTTTTCATTTTAATCGTGATGACGTTGCGCTGAACGGTTTCTATAAATTCTTCATAAACGAGTTTGAAGAGGAGCGACAACATGCGATAAAGTTAATGACTTATCAAAATATGCGGGGTGGTCGGATTGTGTTACAAGATATATCGGCACCTCCCCAACTCTCATGGAATTCGGGACTTCATGCTATGCAGGATGCTCTTGACTTGGAGAAGAAGGTCAATCAGAGTCTGATGGAGTTAGTGGCTGTTGGTGAAAGGCACAGAGATACACACTTTTGCGATTTCATTAATAATGAA                                                                                                                                                                                    ]
[+] EMBL SMFERA               [                                             ACGCACGCAGATGTCTTTGTGCAGACAGAACTATCATGAAGAGTGTGAAGCTGGTGTTAATAAGCAAATTAATATGGAACTATATGCCAGCTATGTTTATATGACTATGGCTTTTCATTTTAATCGTGATGACGTTGCGCTGAACGGTTTCTATAAATTCTTCTTAAACGAGTCTGAAGAGGAGCGACAACATGCGATAAAGTTAATGACTTATCAAAATATGCGGGGTGGTCGGATTGTGTTACAAGATATATCGGCACCTCCCCAACTCTCATGGAATTCGGGACTTCATGCTATGCAGGATGCTCTTGACTTGGAGAAGAAGGTCAATCAGAGTCTGATGGAGTTAGTGGCTGTTGGTGAAAGGCACAGAGATACACACTTTTGCGATTTCATTAATAATGAATATTTGGAGATTCAGGTACAGTCTATGAAAAAGCTTTCCGATTACATTACTAATCTCATTCGTGTTGGCAATGGTCTTGGGGAATACACCTTCGACAAAGAAACCCTACATGGCGAGAGTCAATAATTTTGTATTAGCATGTTGTTATAAACTGTCCTCGAGCTACAATTAATTATATTT]
[-] EMBL CD120317             [                                                                                                                                 TGCCAGCTATGTTTATATGACTATGGCTTTTCATTTTAATCGTGATGACGTTGCGCTGAACGGTTTCTATAAATTCTTCTTAAACGAGTCTGAAGAGGAGCGACAACATGCGATAAAGTTAATGACTTATCAAAATATGCGGGGTGGTCGGATTGTGTTACAAGATATATCGGCACCTCCCCAACTCTCATGGAATTCGGG                                                                                                                                                                                                                                                                                                             ]
[-] EMBL BG931452             [                                                                                                                                                                                                                                                                                                                                                 GCTATGCAGGATGCTCTTGACTTGGAGAAGAAGGTCAATCAGGGTCTGATGGAGTTAGTGGCTGTTGATGAAAGGCACAGAGATACACACTTTTGCGATTTCATTAATAATGAATATTTGGAGATTCAGGTACAGTCTATGAAAAAGCTTTCCGATTACATTACTAATCTCATTCGTGTTGGCAATGGTCTTGGGGAATACACCTTCGACAAAGAAACCCTACACGGCGAG                                                               ]




>consensus_8620#0
GCAGCGTCTGTAGATGATTGGCCGAAACTCGTGATTTCAGAAAGTACGCACGCAGATGTC
TTTGTGCAGACAGAACTATCATGAAGAGTGTGAAGCTGGTGTTAATAAGCAAATTAATAT
GGAACTATATGCCAGCTATGTTTATATGACTATGGCTTTTCATTTTAATCGTGATGACGT
TGCGCTGAACGGTTTCTATAAATTCTTCTTAAACGAGTCTGAAGAGGAGCGACAACATGC
GATAAAGTTAATGACTTATCAAAATATGCGGGGTGGTCGGATTGTGTTACAAGATATATC
GGCACCTCCCCAACTCTCATGGAATTCGGGACTTCATGCTATGCAGGATGCTCTTGACTT
GGAGAAGAAGGTCAATCAGAGTCTGATGGAGTTAGTGGCTGTTGGTGAAAGGCACAGAGA
TACACACTTTTGCGATTTCATTAATAATGAATATTTGGAGATTCAGGTACAGTCTATGAA
AAAGCTTTCCGATTACATTACTAATCTCATTCGTGTTGGCAATGGTCTTGGGGAATACAC
CTTCGACAAAGAAACCCTACATGGCGAGAGTCAATAATTTTGTATTAGCATGTTGTTATA
AACTGTCCTCGAGCTACAATTAATTATATTT

consensusID : consensus_8620#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [TAATAGTTGTTTGGTTTATTTTTTAAAATGAATATTTGAAGATTCGGGTACAGTTGTATGAAAAAACTTTCCGTTTACATTATTAATGTCATTAGTGTTGGCAATGGTCTTGGGGAATACACCTTCGACAAAGGAACCCTCCATGGGGAGAGTCAATAATTTTGTATTAGCATGTTGTTATAAACTGTCCTCAGGGGTACAATTAATTATATTTTGTATAATTTAATGATTTTTACTAATTAATTTATGTATTCCGAAGTTACGTTTAGTACGATTCAGATTGTTACCAAGTGAGGTTTTTGGTCATTGGTCGCCGAAGCTTAAAACTTAACATATACCAGTCGTTATTTTCTGAAAGAGTCGTTCTGAGTGCCATAAGCCATGTCGTTCATGGGAAATTAGTTTCGGCAGTATGCCATTTCCGAGCCATAGTCTGCCACTGCCCTTTAATACGTTTTTCCCGTAAATTGATCTAGCCTT]

[-] EMBL CD060073             [TAATAGTTGTTTGGTTTATTTTTTAAAATGAATATTTGAAGATTCGGGTACAGTTGTATGAAAAAACTTTCCGTTTACATTATTAATGTCATTAGTGTTGGCAATGGTCTTGGGGAATACACCTTCGACAAAGGAACCCTCCATGGGGAGAGTCAATAATTTTGTATTAGCATGTTGTTATAAACTGTCCTCAGGGGTACAATTAATTATATTTTGTATAATTTAATGATTTTTACTAATTAATTTATGTATTCCGAAGTTACGTTTAGTACGATTCAGATTGTTACCAAGTGAGGTTTTTGGTCATTGGTCGCCGAAGCTTAAAACTTAACATATACCAGTCGTTATTTTCTGAAAGAGTCGTTCTGAGTGCCATAAGCCATGTCGTTCATGGGAAATTAGTTTCGGCAGTATGCCATTTCCGAGCCATAGTCTGCCACTGCCCTTTAATACGTTTTTCCCGTAAATTGATCTAGCCTT]




>consensus_8620#1
TAATAGTTGTTTGGTTTATTTTTTAAAATGAATATTTGAAGATTCGGGTACAGTTGTATG
AAAAAACTTTCCGTTTACATTATTAATGTCATTAGTGTTGGCAATGGTCTTGGGGAATAC
ACCTTCGACAAAGGAACCCTCCATGGGGAGAGTCAATAATTTTGTATTAGCATGTTGTTA
TAAACTGTCCTCAGGGGTACAATTAATTATATTTTGTATAATTTAATGATTTTTACTAAT
TAATTTATGTATTCCGAAGTTACGTTTAGTACGATTCAGATTGTTACCAAGTGAGGTTTT
TGGTCATTGGTCGCCGAAGCTTAAAACTTAACATATACCAGTCGTTATTTTCTGAAAGAG
TCGTTCTGAGTGCCATAAGCCATGTCGTTCATGGGAAATTAGTTTCGGCAGTATGCCATT
TCCGAGCCATAGTCTGCCACTGCCCTTTAATACGTTTTTCCCGTAAATTGATCTAGCCTT

consensusID : consensus_8620#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [CTNCTGAAACGAGTCTGAAGAGGAGTGACAACATGNGATANNGTNANTGACTTATCACTATATGCGGGGTGGTCGGATTGTGTNACAAGATATATCGGCACCTCCCCAACTCTNATGGAAATTCGGCTACTTCATGCTATGCAGNNTGCTCTCGACTCGGCGNAAGGAAGGTCAATCAGAGNCTGATGGAGTTAGNGGCTGATTGTGTNTAAAGGCACAGAGATACACACTTTGGCGATGTCATTAATAATNTAATATCTGGAGATTCAGGTCACAGNCTATGATNATNGCTTACCGATTNCATTACTAGTCTCATTCCGGGTTGNCAATGNNTCTTNNGGGGANTCCACCTTCCGACAACNNACCCCCTACATTGGCGAACAGTCAATNNTTTNGGTTTAGTAATCTTGGTTATAAACTTCTCCTCGAGC]

[+] EMBL SM601                [CTNCTGAAACGAGTCTGAAGAGGAGTGACAACATGNGATANNGTNANTGACTTATCACTATATGCGGGGTGGTCGGATTGTGTNACAAGATATATCGGCACCTCCCCAACTCTNATGGAAATTCGGCTACTTCATGCTATGCAGNNTGCTCTCGACTCGGCGNAAGGAAGGTCAATCAGAGNCTGATGGAGTTAGNGGCTGATTGTGTNTAAAGGCACAGAGATACACACTTTGGCGATGTCATTAATAATNTAATATCTGGAGATTCAGGTCACAGNCTATGATNATNGCTTACCGATTNCATTACTAGTCTCATTCCGGGTTGNCAATGNNTCTTNNGGGGANTCCACCTTCCGACAACNNACCCCCTACATTGGCGAACAGTCAATNNTTTNGGTTTAGTAATCTTGGTTATAAACTTCTCCTCGAGC]




>consensus_8620#2
CTNCTGAAACGAGTCTGAAGAGGAGTGACAACATGNGATANNGTNANTGACTTATCACTA
TATGCGGGGTGGTCGGATTGTGTNACAAGATATATCGGCACCTCCCCAACTCTNATGGAA
ATTCGGCTACTTCATGCTATGCAGNNTGCTCTCGACTCGGCGNAAGGAAGGTCAATCAGA
GNCTGATGGAGTTAGNGGCTGATTGTGTNTAAAGGCACAGAGATACACACTTTGGCGATG
TCATTAATAATNTAATATCTGGAGATTCAGGTCACAGNCTATGATNATNGCTTACCGATT
NCATTACTAGTCTCATTCCGGGTTGNCAATGNNTCTTNNGGGGANTCCACCTTCCGACAA
CNNACCCCCTACATTGGCGAACAGTCAATNNTTTNGGTTTAGTAATCTTGGTTATAAACT
TCTCCTCGAGC

consensusID : consensus_8620#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 141
fasta sequence

                              [GCTATGCAGGATGCTCTTGACTTGGAGAAGAAGGTCAATCAGAGTCTGATGGAGTTAGTGGCTGTTGGTGAAAGGCACAGAGATACACACTTTTGCGATTTCATTAATAGTAAGTTCACTGTCAGGTTTCCTATGATGGGG]

[-] EMBL BG930327             [GCTATGCAGGATGCTCTTGACTTGGAGAAGAAGGTCAATCAGAGTCTGATGGAGTTAGTGGCTGTTGGTGAAAGGCACAGAGATACACACTTTTGCGATTTCATTAATAGTAAGTTCACTGTCAGGTTTCCTATGATGGGG]




>consensus_8620#3
GCTATGCAGGATGCTCTTGACTTGGAGAAGAAGGTCAATCAGAGTCTGATGGAGTTAGTG
GCTGTTGGTGAAAGGCACAGAGATACACACTTTTGCGATTTCATTAATAGTAAGTTCACT
GTCAGGTTTCCTATGATGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8620#2      ------------------------------------------------------------
consensus_8620#3      ------------------------------------------------------------
consensus_8620#0      GCAGCGTCTGTAGATGATTGGCCGAAACTCGTGATTTCAGAAAGTACGCACGCAGATGTC 60
consensus_8620#1      ------------------------------------------------------------
                                                                                  

consensus_8620#2      ------------------------------------------------------------
consensus_8620#3      ------------------------------------------------------------
consensus_8620#0      TTTGTGCAGACAGAACTATCATGAAGAGTGTGAAGCTGGTGTTAATAAGCAAATTAATAT 120
consensus_8620#1      ------------------------------------------------------------
                                                                                  

consensus_8620#2      ------------------------------------------------------------
consensus_8620#3      ------------------------------------------------------------
consensus_8620#0      GGAACTATATGCCAGCTATGTTTATATGACTATGGCTTTTCATTTTAATCGTGATGACGT 180
consensus_8620#1      -----------------------------------------------------TAATAGT 7
                                                                                  

consensus_8620#2      ------------------------CTNCTGAAACGAGTCTGAAGAGGAGTGACAACATGN 36
consensus_8620#3      ------------------------------------------------------------
consensus_8620#0      TGCGCTGAACGGTTTCTATAAATTCTTCTTAAACGAGTCTGAAGAGGAGCGACAACATGC 240
consensus_8620#1      TGTTTGGTTTATTTTTTAAAATGAATATTTGAAGATTCGGGTACAGTTGTATGAAAAAAC 67
                                                                                  

consensus_8620#2      GATANNGTNANTGACTTATCACTATATGCGGGGTGGTCGGATTGTGTNACAAGATATATC 96
consensus_8620#3      ------------------------------------------------------------
consensus_8620#0      GATAAAGTTAATGACTTATCAAAATATGCGGGGTGGTCGGATTGTGTTACAAGATATATC 300
consensus_8620#1      TTTCCGTTTACATTATTAATGTCATTAGTGTTGGCAATGGTCTTGGGGAATACACCT-TC 126
                                                                                  

consensus_8620#2      GGCACCTCCCCAACTCTNATGGAAATTCGGCTACTTCATGCTATGCAGNNTGCTCTCGAC 156
consensus_8620#3      ---------------------------------------GCTATGCAGGATGCTCTTGAC 21
consensus_8620#0      GGCACCTCCCCAACTCTCATGGAATTCGGG--ACTTCATGCTATGCAGGATGCTCTTGAC 358
consensus_8620#1      GACAAAGGAACCCTCCATGGGGAGAGTCAATAATTTTGTATTA-GCATGTTGTTATAAAC 185
                                                               ** ***   ** * *  **

consensus_8620#2      TCGGCGNAAGG--AAGGTCAATCAGAGNCTGATGGAGTTAGNGGCTGATTGTGTNTAA-- 212
consensus_8620#3      TTGGAGAA--G--AAGGTCAATCAGAGTCTGATGGAGTTAGTGGCTGTTGGTG---AA-- 72
consensus_8620#0      TTGGAGAA--G--AAGGTCAATCAGAGTCTGATGGAGTTAGTGGCTGTTGGTG---AA-- 409
consensus_8620#1      TGTCCTCAGGGGTACAATTAATTATATTTTGTATAATTTAATGATTTTTACTAATTAATT 245
                      *      *  *  *   * *** * *   **    * ***  *  *  *  *    **  

consensus_8620#2      -AGGCA---CAGAGATACACACTTTGGCGATGTC-ATTAATAATNTAATATCTGGAGATT 267
consensus_8620#3      -AGGCA---CAGAGATACACACTTTTGCGATTTC-ATTAATAGTAAGTTCACTG-----T 122
consensus_8620#0      -AGGCA---CAGAGATACACACTTTTGCGATTTC-ATTAATAATGAA-TATTTGGAGATT 463
consensus_8620#1      TATGTATTCCGAAGTTACGT-TTAGTACGATTCAGATTGTTACCAAGTGAGGTTTTTGGT 304
                       * * *   *  ** ***    *    ****    ***  **          *      *

consensus_8620#2      CAGGTCACAGNCTATGATNATNGCTTACCGATTNCATTACTAGTCTCATTCCGGGTTGNC 327
consensus_8620#3      CAGGTTTC---CTATGATGGGG-------------------------------------- 141
consensus_8620#0      CAGGT-ACAGTCTATGA-AAAAGCTTTCCGATTACATTACTAATCTCATTC-GTGTTGGC 520
consensus_8620#1      CATTGGTCGCCGAAGCTTAAAACTTAACATATACCAGTCGTTATTTTCTGAAAGAGTCGT 364
                      **     *     *                                              

consensus_8620#2      AATGNNTCTTNNGGGGANTCCACCTTCCGACAACNNACCCCCTACATTGGCGAACAGTCA 387
consensus_8620#3      ------------------------------------------------------------
consensus_8620#0      AATGGTCTTGGGGAATACACCTTCGACAAAGAAACCCTACATGGCGAGAGTCAATAATTT 580
consensus_8620#1      TCTGAGTGCCATAAGCCATGTCGTTCATGGGAAATTAGTTTCGGCAGTATGCCATTTCCG 424
                                                                                  

consensus_8620#2      ATNNTTTNGGTTTAGTAATCTTGGTTATAAACTTCTCCTCGAGC------------ 431
consensus_8620#3      --------------------------------------------------------
consensus_8620#0      TGTATTAGCATGTTGTTATAAACTGTCCTCGAGCTACAATTAATTATATTT----- 631
consensus_8620#1      AGCCATAGTCTGCCACTGCCCTTTAATACGTTTTTCCCGTAAATTGATCTAGCCTT 480