These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 972 fasta sequence [CCCTCGAGCCAANAATTCGGCACGAGGATTATCGGACTGTTTTAATATCACGCTCGCGTTATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATATTTCGATGATGTTAAATTGATCACTAGAACTGGAAGTTAATTCTATTTGTTTCTTTTCCAGTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCA-ACACATCATGCTATAGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACAATCAGACGAAATACCTCTACTGAGTCCAACCAGTACTAAATTGTTGAAATCCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAATCTACCATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTTCAGTGTTTGTATATCTGTGATTAGACATTAACACGTGTTTCTACCCTATTGTTCTCTATTGTGCATAATAAACACCT] [+] EMBL CD080121 [CCCTCGAGCCAANAATTCGGCACGAGGATTATCGGACTGTTTTAATATCACGCTCGCGTTATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATATTTCGATGATGTTAAATTGATCACTAGAACTGGAAGTTAATTCTATTTGTTTCTTTTCCAGTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCA ACACATCATGCTATAGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGA ] [-] EMBL CD074874 [ TTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCA ACACATCATGCTATAGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACAATCAGACGAAATACCTCTACTGAGTCCAACCAGTACTAAATTGTTGAAATCCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAATCTACCATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTTCAGTGTTTGTATATCTGTGATTAGACATTAACACGTGTTTCTACCCTATTGTTCTCTATTGTGCATAATAAACACCT] [-] EMBL CD201796 [ CCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCA ACACATCATGCTATAGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATAAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACAATCAGACGAAATTCCTCTACTGAGTCCAACCAGTACTAAATTGTTGAAATCCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAATCTACCATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTTCAGTGTTTGTATATCTGTGATTAGACATTAACACGTGTTTCTAC ] [+] EMBL CD125529 [ GTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCA ACACATCATGCTATAGGAACTTTTAACTTTCTGAACTCAGAAAG ] [-] EMBL CD168340 [ CTACGTGTGGAGGTGATGTCACAC CATCATGCTATAGGAACTTTTAACTTTCTGAATTCAGAAAGACAATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACAATCAGTCGAAATACCTCTACTGAGTCCAACCAGTACTAAATTGTTGAAATCCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAATCTACCATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTTCAGTGTTTGTATATCTGTGATTAGACATTAACACGTGTTTCTACCCTATTGTTC ] consensusID : consensus_8621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [AGCGTCTTTGTGACAACCTTAAAACCTCACACANTTGTTTCGATTATGTTATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACATCAGACGAAATACC] [+] EMBL CD081047 [AGCGTCTTTGTGACAACCTTAAAACCTCACACANTTGTTTCGATTATGTTATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACATCAGACGAAATACC] consensusID : consensus_8621#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [TTACCATGTGGGAACTGGAAGTTAATTCTATTTGTTTCTTTTCCAGTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTG] [-] EMBL CD163458 [TTACCATGTGGGAACTGGAAGTTAATTCTATTTGTTTCTTTTCCAGTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8621#0 CCCTCGAGCCAANAATTCGGCACGAGGATTATCGGACTGTTTTAATATCACGCTCGCGTT 60 consensus_8621#2 ------------------------------------------------------------ consensus_8621#1 ------------------------------------------------------------ consensus_8621#0 ATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATATTTCGATGATGTTAAATTGATCA 120 consensus_8621#2 ------------------------------------------------------TTACCA 6 consensus_8621#1 -----------------AGCGTCTTTGTGACAACCTTAAAACCTCACACANTTGTTTCGA 43 * * consensus_8621#0 CT--AGAACTGGAAGTTAAT-TCTATTTGTTTCTTTTCCAG--TCATAAATGAATCAGTC 175 consensus_8621#2 TGTGGGAACTGGAAGTTAAT-TCTATTTGTTTCTTTTCCAG--TCATAAATGAATCAGTC 63 consensus_8621#1 TTATGTTATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATTCATAAATGAATCAGTC 103 * * ** * ** *** ***** ** ** ***************** consensus_8621#0 TCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCT 235 consensus_8621#2 TCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCT 123 consensus_8621#1 TCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCT 163 ************************************************************ consensus_8621#0 CTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGT 295 consensus_8621#2 CTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGT 183 consensus_8621#1 CTCTGATAATGG--------------------------TCGGTGCTGATGTTGAAATGGT 197 ************ ********************** consensus_8621#0 TAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAA 355 consensus_8621#2 TAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAA 243 consensus_8621#1 TAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAA 257 ************************************************************ consensus_8621#0 TACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAA 415 consensus_8621#2 TACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAA 303 consensus_8621#1 TACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGTGAATATTTCGGA 317 *********************************************** ** ** * * consensus_8621#0 GATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCC 475 consensus_8621#2 GATGAAAGATGCTTTG-------------------------------------------- 319 consensus_8621#1 GGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAA 377 * * ***** consensus_8621#0 TCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACG 535 consensus_8621#2 ------------------------------------------------------------ consensus_8621#1 GGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCG 437 consensus_8621#0 AATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCAACACATCATGC 595 consensus_8621#2 ------------------------------------------------------------ consensus_8621#1 TCTACCTGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCAT 497 consensus_8621#0 TATAGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCC 655 consensus_8621#2 ------------------------------------------------------------ consensus_8621#1 TCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATT 557 consensus_8621#0 TCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGA 715 consensus_8621#2 ------------------------------------------------------------ consensus_8621#1 GGACAGAGAGAGTCAACATCAGACGAAATACC---------------------------- 589 consensus_8621#0 CAGAGAGAGTCAACAATCAGACGAAATACCTCTACTGAGTCCAACCAGTACTAAATTGTT 775 consensus_8621#2 ------------------------------------------------------------ consensus_8621#1 ------------------------------------------------------------ consensus_8621#0 GAAATCCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAA 835 consensus_8621#2 ------------------------------------------------------------ consensus_8621#1 ------------------------------------------------------------ consensus_8621#0 TCTACCATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTT 895 consensus_8621#2 ------------------------------------------------------------ consensus_8621#1 ------------------------------------------------------------ consensus_8621#0 CAGTGTTTGTATATCTGTGATTAGACATTAACACGTGTTTCTACCCTATTGTTCTCTATT 955 consensus_8621#2 ------------------------------------------------------------ consensus_8621#1 ------------------------------------------------------------ consensus_8621#0 GTGCATAATAAACACCT 972 consensus_8621#2 ----------------- consensus_8621#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||