These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1230 fasta sequence [TAATTAGACGGTCCTCTTGTGTTACGTTGGATTGTCAGAATTAGGTAAAAATACTGAAATGATTAAATAAAGAACCTGAATCCAACTTCCGTATTCCTCTGTAGTCATAAATTTTATTCACTAGAGACAAATCAGTCCTAAATTAAATAAGTGTAAGATTTGAACAAGGGACCGTCCAGTTCCTCCATGTAATATCTTAATTTATACATCTTTTGTCCAAAAATGAACCGAACTCCCCAAGAACGTCTGGATGCTCTCCTTAAGTCTGCCGAAGATTTCACTATCATTCAAAATATAGACATTTCTCACTATGCACGGTTTATCCGGTCGATGTTTCGTTTGTCTGTCCAGTTCTCAGAAGCAGGTCAAAAAGAAAGAGCGTACATATTATCCATAAGAGCTGTTTTGTGTATCCGAGAATTACCTAATCATAATGGTTACCATAGACTGGATCCACGTGTTCAAAACGAACTCAAAAGTCTTGGTAAATTACTCCCAAAATCTGCCGAGTTCTTAAAGGATGATTTGAAAAAGAAGTACACAGAGGAATATGAGTTGTATAAAAAGTCACTTAGTATAACTGAATGGAAAGTGAATACAAATGGGCCAGTGGTACCCTTTCTTAAACATACTTCAAAACCATATGATGACTATCCAGTTGATCCCAACTCTTATAGACACTCCTTGTCTAATTTATCTTCAGTTAATGGGACATTATATCCCGCTTTTAATAAAGCCCTCAACTATACTCCCGATGAACTCCCAAGATCTTTGTACAGTAACTACACAGGAAATTATGGTTTAACGAAAACATATTTATCTCGACATCTGATTAGTGACTTTTTGAGCCTAGCTATGT-AAAACACTAAAGGAAATCGAGAAACTTGTGGGACCCTATGTGGGAAATTAATTAGTGGCAATTTCTATATTACAAACCTTCTAATTCCGAAACAAAGTGGTACTCCAGACTCTTGCGTTACGTATAATGAAGAGGAAATATTCGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCAAACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCCGGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATATTAAATGTTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAAACAGGTTTC] [+] EMBL AI975153 [TAATTAGACGGTCCTCTTGTGTTACGTTGGATTGTCAGAATTAGGTAAAAATACTGAAATGATTAAATAAAGAACCTGAATCCAACTTCCGTATTCCTCTGTAGTCATAAATTTTATTCACTAGAGACAAATCAGTCCTAAATTAAATAAGTGTAAGATTTGAACAAGGGACCGTCCAGTTCCTCCATGTAATATCTTAATTTATACATCTTTTGTCCAAAAATGAACCGAACTCCCCAAGAACGTCTGGATGCTCTCCTTAAGTCTGCCGAAGATTTCACTATCATTCAAAATATAGACATTTCTCACTATGCACGGTTTATCCGGTCGATGTTTCGTTTGTCTGTCCAGTTCTCAGAAGCAGGTCAAAAAGAAAGAGCGTACATATTATCCATAAGAGCTGTTTTGTGTATCCGAGAATTACCTAATCATAATGGTTACCATAGACTGGATCCACGTGTTCAAAA ] [+] EMBL CD083350 [ TTGTGT TCCGAGAATTACCTAATCAT ATGGTTACCATAGACTGGATCCACGTGTTCAAAACGAACTCAAAAGTCTTGGTAAATTACTCCCAAAATCTGCCGAGTTCTTAAAGGATGATTTGAAAAAGAAGTACACAGAGGAATATGAGTTGTATAAAAAGTCACTTAGTATAACTGAATGGAAAGTGAATACAAATGGGCCAGTGGTACCCTTTCTTAAACATACTTCAAAACCATATGATGACTATCCAGTTGATCCCAACTCTTATAGACACTCCTTGTCTAATTTATCTTCAGTTAATGGGACATTATATCCCGCTTTTAATAAAGCCCTCAACTATACTCCCGATGAACTCCCAAGATCTTTGTACAGTAACTACACAGGAAATTATGGTTTAACGAAAACATATTTATCTCGACATCTGATTAGTGACTTTTTGAGCCTAGCTATGT AAAACACTAAAGGAAATCGAGAAAC ] [+] EMBL CD083863 [ ACTACACAGGAAATTATGGTTTAACGAAAACATATTTATCTCGACATCTGATTAGTGACTTTTTGAGCCTAGCTA GTAAAAACACTAAAGGAAATCGAGAAACTTGTGGGACCCTATGTGGGAAATTAATTAGTGGCAATTTCTATATTACAAACCTTCTAATTCCGAAACAAAGTGGTACTCCAGACTCTTGCGTTACGTATAATGAAGAGGAAATATTCGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCAAACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCCGGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATAT ] [-] EMBL CD183133 [ CCAGACTCNTGCGTTACGTATAATGAAGAGGAAATATTCGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCAAACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCCGGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATATTAAATGTTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAAACAGGTTTC] consensusID : consensus_8622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 378 fasta sequence [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCACAAGTGATAAACCTTTGTGATTGTTGATCAATAGCAAAAACATTTACAAGAAGCATTTGACAATCAAAAAAAATAAATAAGGGTCTCATTAGGAAAATATTGCAAACCATTTATAGTTTCTTAAATTAAGGTCAGAAAGAAGTGAAATAGATAAAGCATAAAGAATAGTCTGTCCATTCAAAACTCACTGTACAAACATTGTGAACTTTCAAATTATCGGAGATCATCAGAAGAATGTTCAATAGTGTCGTCAAATATTACATGTTGACTTTGTTCATATAATGGGAGATCTGTGGCATGTGGA] [+] EMBL AI975058 [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCACAAGTGATAAACCTTTGTGATTGTTGATCAATAGCAAAAACATTTACAAGAAGCATTTGACAATCAAAAAAAATAAATAAGGGTCTCATTAGGAAAATATTGCAAACCATTTATAGTTTCTTAAATTAAGGTCAGAAAGAAGTGAAATAGATAAAGCATAAAGAATAGTCTGTCCATTCAAAACTCACTGTACAAACATTGTGAACTTTCAAATTATCGGAGATCATCAGAAGAATGTTCAATAGTGTCGTCAAATATTACATGTTGACTTTGTTCATATAATGGGAGATCTGTGGCATGTGGA] [+] EMBL BF936797 [ GTCTCATTAGGAAAATATTGCAAACCATTTATAGTTTCTTAAATTAAGGTCAAAAAGAAGTGAAATAGATAAAGCATAAAGAATAGTCTGTACATTCAAAACTCACTGTACAAACATTGTGAACTTTCAAATTA ] consensusID : consensus_8622#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [ATCACATGGGGTGGATTCATACACATCCTATTCAACGGGCTTTCTTATCGGCTGTTGATTTACATTGTCACTTGTCTTACCAGACTATGCTTCCGAAAGCGATTGCNAATGTATGCGCTCCTAAGTCGATTGATATTTAATTGTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAACAGGTTTCCATCCACATGCCACAGATCTCCCATTATATGAACANAGTCAACATGTAATATTTGACGACACTATTGAACATTCTTCTGATGATCTCCGATAATTTGAAAGTTCACAATGTTTGTACAGTGAGTTTTGAATGTACAGACTATTCTTTATGCTTTATCTATAATATTCTCCTA] [-] EMBL CD135915 [ATCACATGGGGTGGATTCATACACATCCTATTCAACGGGCTTTCTTATCGGCTGTTGATTTACATTGTCACTTGTCTTACCAGACTATGCTTCCGAAAGCGATTGCNAATGTATGCGCTCCTAAGTCGATTGATATTTAATTGTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAACAGGTTTCCATCCACATGCCACAGATCTCCCATTATATGAACANAGTCAACATGTAATATTTGACGACACTATTGAACATTCTTCTGATGATCTCCGATAATTTGAAAGTTCACAATGTTTGTACAGTGAGTTTTGAATGTACAGACTATTCTTTATGCTTTATCTATAATATTCTCCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8622#0 TAATTAGACGGTCCTCTTGTGTTACGTTGGATTGTCAGAATTAGGTAAAAATACTGAAAT 60 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 GATTAAATAAAGAACCTGAATCCAACTTCCGTATTCCTCTGTAGTCATAAATTTTATTCA 120 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 CTAGAGACAAATCAGTCCTAAATTAAATAAGTGTAAGATTTGAACAAGGGACCGTCCAGT 180 consensus_8622#2 ----------ATCA--CATGGGGTGGATTCATACACATCCTATTCAACGGGCTTTCTTAT 48 consensus_8622#1 ----------------TACGCAGTACGGTAATGCAG---CTGCATGGCATGTTTTTTTTT 41 * * * * * * consensus_8622#0 TCCTCCATGTAATATCTTAATTTATACATCTTTTGTCCAAAAATGAACCGAACTCCCCAA 240 consensus_8622#2 CGGCTGTTG----ATTTACATTGTCACTTGTCTTACCAGACTATGCTTCCGAAAGC--GA 102 consensus_8622#1 TTTTTTTT------TTTTTTTTTTTTTTTTTTTCTTTCACAAGTGA-TAAACCTTTGTGA 94 * * * ** * * * ** * consensus_8622#0 GAACGTCTGGATGCTCTCCTTAAGTCTGCCGAAGATT--TCACTATCATTCAA----AAT 294 consensus_8622#2 TTGCNAATGTATGCGCTCCT-AAGTCGATTGATATTTAATTGTTTTCATTAACTCCTGAT 161 consensus_8622#1 TTGTTGATCAATAG--CAAAAACATTTACAAGAAGCATTTGACAATCAAAAAA----AAT 148 * ** * * * *** * ** consensus_8622#0 ATAGACATTTCTCACTATGCACGGTTTATCCGGTCGATGTTTCGTTTGTCTGTC-CAGTT 353 consensus_8622#2 CACGGCATTTCATTCCTGTCAAAATGTAAAAAACAGGT-TTCCATCCACATGCCACAGAT 220 consensus_8622#1 AAATAAGGGTCTCATTAGG-AAAATATTGCAAACCATT-TATAGTTTCTTAAATTAAGGT 206 ** * * * * * * ** * consensus_8622#0 CTCAGAAGCAGGTCAAAAAGAAAGAGCGTACATATTA-----TCCATAAGAGCTGTTTTG 408 consensus_8622#2 CTCCCA------TTATATGAACANAGTCAACATGTAA-----TATTTGACGACACTATTG 269 consensus_8622#1 CAGAAAG--AAGTGAAATAGATAAAGCATAAAGAATAGTCTGTCCATTCAAAACTCACTG 264 * * * * * * * ** * * * * * ** consensus_8622#0 TGTATCC----GAGAATTACC--TAATCATA-ATGGTTACCATAGACTGGATCCACGTGT 461 consensus_8622#2 AACATTCTTCTGATGATCTCCGATAATTTGA-AAGTTCACAAT--GTTTGTACAGTGAGT 326 consensus_8622#1 TACAAACATTGTGAACTTTCAAATTATCGGAGATCATCAGAAGAATGTTCAATAGTGTCG 324 * * * * * ** * * * * * * * consensus_8622#0 TCAAAACGAACTCAAAAGTCTTGGTAAATTACTCCCAAAATCTGCCGAGTTCTTAAAGGA 521 consensus_8622#2 TTTGAATGTACAGACTATTCTTTATGCTTTATCTATAATATTCTCCTA------------ 374 consensus_8622#1 TCAAATATTACATGTTGACTTTGTTCATATAAT-GGGAGATCTGTGGCATGTGGA----- 378 * * ** ** * ** * ** consensus_8622#0 TGATTTGAAAAAGAAGTACACAGAGGAATATGAGTTGTATAAAAAGTCACTTAGTATAAC 581 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 TGAATGGAAAGTGAATACAAATGGGCCAGTGGTACCCTTTCTTAAACATACTTCAAAACC 641 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 ATATGATGACTATCCAGTTGATCCCAACTCTTATAGACACTCCTTGTCTAATTTATCTTC 701 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 AGTTAATGGGACATTATATCCCGCTTTTAATAAAGCCCTCAACTATACTCCCGATGAACT 761 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 CCCAAGATCTTTGTACAGTAACTACACAGGAAATTATGGTTTAACGAAAACATATTTATC 821 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 TCGACATCTGATTAGTGACTTTTTGAGCCTAGCTATGTAAAACACTAAAGGAAATCGAGA 881 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 AACTTGTGGGACCCTATGTGGGAAATTAATTAGTGGCAATTTCTATATTACAAACCTTCT 941 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 AATTCCGAAACAAAGTGGTACTCCAGACTCTTGCGTTACGTATAATGAAGAGGAAATATT 1001 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 CGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCA 1061 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 AACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCC 1121 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 GGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATATTAAATGTTTTTCATTAAC 1181 consensus_8622#2 ------------------------------------------------------------ consensus_8622#1 ------------------------------------------------------------ consensus_8622#0 TCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAAACAGGTTTC 1230 consensus_8622#2 ------------------------------------------------- consensus_8622#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||