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Schistosoma mansoni
cluster # 8622 cluster # 8622       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8622#0 length = 1230 sequences # 4  
consensus_8622#1 length = 378 sequences # 2  
consensus_8622#2 length = 374 sequences # 1  

consensusID : consensus_8622#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1230
fasta sequence
                              [TAATTAGACGGTCCTCTTGTGTTACGTTGGATTGTCAGAATTAGGTAAAAATACTGAAATGATTAAATAAAGAACCTGAATCCAACTTCCGTATTCCTCTGTAGTCATAAATTTTATTCACTAGAGACAAATCAGTCCTAAATTAAATAAGTGTAAGATTTGAACAAGGGACCGTCCAGTTCCTCCATGTAATATCTTAATTTATACATCTTTTGTCCAAAAATGAACCGAACTCCCCAAGAACGTCTGGATGCTCTCCTTAAGTCTGCCGAAGATTTCACTATCATTCAAAATATAGACATTTCTCACTATGCACGGTTTATCCGGTCGATGTTTCGTTTGTCTGTCCAGTTCTCAGAAGCAGGTCAAAAAGAAAGAGCGTACATATTATCCATAAGAGCTGTTTTGTGTATCCGAGAATTACCTAATCATAATGGTTACCATAGACTGGATCCACGTGTTCAAAACGAACTCAAAAGTCTTGGTAAATTACTCCCAAAATCTGCCGAGTTCTTAAAGGATGATTTGAAAAAGAAGTACACAGAGGAATATGAGTTGTATAAAAAGTCACTTAGTATAACTGAATGGAAAGTGAATACAAATGGGCCAGTGGTACCCTTTCTTAAACATACTTCAAAACCATATGATGACTATCCAGTTGATCCCAACTCTTATAGACACTCCTTGTCTAATTTATCTTCAGTTAATGGGACATTATATCCCGCTTTTAATAAAGCCCTCAACTATACTCCCGATGAACTCCCAAGATCTTTGTACAGTAACTACACAGGAAATTATGGTTTAACGAAAACATATTTATCTCGACATCTGATTAGTGACTTTTTGAGCCTAGCTATGT-AAAACACTAAAGGAAATCGAGAAACTTGTGGGACCCTATGTGGGAAATTAATTAGTGGCAATTTCTATATTACAAACCTTCTAATTCCGAAACAAAGTGGTACTCCAGACTCTTGCGTTACGTATAATGAAGAGGAAATATTCGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCAAACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCCGGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATATTAAATGTTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAAACAGGTTTC]

[+] EMBL AI975153             [TAATTAGACGGTCCTCTTGTGTTACGTTGGATTGTCAGAATTAGGTAAAAATACTGAAATGATTAAATAAAGAACCTGAATCCAACTTCCGTATTCCTCTGTAGTCATAAATTTTATTCACTAGAGACAAATCAGTCCTAAATTAAATAAGTGTAAGATTTGAACAAGGGACCGTCCAGTTCCTCCATGTAATATCTTAATTTATACATCTTTTGTCCAAAAATGAACCGAACTCCCCAAGAACGTCTGGATGCTCTCCTTAAGTCTGCCGAAGATTTCACTATCATTCAAAATATAGACATTTCTCACTATGCACGGTTTATCCGGTCGATGTTTCGTTTGTCTGTCCAGTTCTCAGAAGCAGGTCAAAAAGAAAGAGCGTACATATTATCCATAAGAGCTGTTTTGTGTATCCGAGAATTACCTAATCATAATGGTTACCATAGACTGGATCCACGTGTTCAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD083350             [                                                                                                                                                                                                                                                                                                                                                                                                                     TTGTGT TCCGAGAATTACCTAATCAT ATGGTTACCATAGACTGGATCCACGTGTTCAAAACGAACTCAAAAGTCTTGGTAAATTACTCCCAAAATCTGCCGAGTTCTTAAAGGATGATTTGAAAAAGAAGTACACAGAGGAATATGAGTTGTATAAAAAGTCACTTAGTATAACTGAATGGAAAGTGAATACAAATGGGCCAGTGGTACCCTTTCTTAAACATACTTCAAAACCATATGATGACTATCCAGTTGATCCCAACTCTTATAGACACTCCTTGTCTAATTTATCTTCAGTTAATGGGACATTATATCCCGCTTTTAATAAAGCCCTCAACTATACTCCCGATGAACTCCCAAGATCTTTGTACAGTAACTACACAGGAAATTATGGTTTAACGAAAACATATTTATCTCGACATCTGATTAGTGACTTTTTGAGCCTAGCTATGT AAAACACTAAAGGAAATCGAGAAAC                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD083863             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACTACACAGGAAATTATGGTTTAACGAAAACATATTTATCTCGACATCTGATTAGTGACTTTTTGAGCCTAGCTA GTAAAAACACTAAAGGAAATCGAGAAACTTGTGGGACCCTATGTGGGAAATTAATTAGTGGCAATTTCTATATTACAAACCTTCTAATTCCGAAACAAAGTGGTACTCCAGACTCTTGCGTTACGTATAATGAAGAGGAAATATTCGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCAAACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCCGGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATAT                                                                   ]
[-] EMBL CD183133             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCAGACTCNTGCGTTACGTATAATGAAGAGGAAATATTCGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCAAACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCCGGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATATTAAATGTTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAAACAGGTTTC]


>consensus_8622#0 TAATTAGACGGTCCTCTTGTGTTACGTTGGATTGTCAGAATTAGGTAAAAATACTGAAAT GATTAAATAAAGAACCTGAATCCAACTTCCGTATTCCTCTGTAGTCATAAATTTTATTCA CTAGAGACAAATCAGTCCTAAATTAAATAAGTGTAAGATTTGAACAAGGGACCGTCCAGT TCCTCCATGTAATATCTTAATTTATACATCTTTTGTCCAAAAATGAACCGAACTCCCCAA GAACGTCTGGATGCTCTCCTTAAGTCTGCCGAAGATTTCACTATCATTCAAAATATAGAC ATTTCTCACTATGCACGGTTTATCCGGTCGATGTTTCGTTTGTCTGTCCAGTTCTCAGAA GCAGGTCAAAAAGAAAGAGCGTACATATTATCCATAAGAGCTGTTTTGTGTATCCGAGAA TTACCTAATCATAATGGTTACCATAGACTGGATCCACGTGTTCAAAACGAACTCAAAAGT CTTGGTAAATTACTCCCAAAATCTGCCGAGTTCTTAAAGGATGATTTGAAAAAGAAGTAC ACAGAGGAATATGAGTTGTATAAAAAGTCACTTAGTATAACTGAATGGAAAGTGAATACA AATGGGCCAGTGGTACCCTTTCTTAAACATACTTCAAAACCATATGATGACTATCCAGTT GATCCCAACTCTTATAGACACTCCTTGTCTAATTTATCTTCAGTTAATGGGACATTATAT CCCGCTTTTAATAAAGCCCTCAACTATACTCCCGATGAACTCCCAAGATCTTTGTACAGT AACTACACAGGAAATTATGGTTTAACGAAAACATATTTATCTCGACATCTGATTAGTGAC TTTTTGAGCCTAGCTATGTAAAACACTAAAGGAAATCGAGAAACTTGTGGGACCCTATGT GGGAAATTAATTAGTGGCAATTTCTATATTACAAACCTTCTAATTCCGAAACAAAGTGGT ACTCCAGACTCTTGCGTTACGTATAATGAAGAGGAAATATTCGAGTACTTAGACAGGAGG CAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCAAACGGCTTTCTTATCGGCT GTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCCGGAAGCGATTGCAATTGTA TGCGCTCCTAAGTTCGATGATATTAAATGTTTTTCATTAACTCCTGATCACGGCATTTCA TTCCTGTCAAAATGTAAAAAAACAGGTTTC



consensusID : consensus_8622#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 378
fasta sequence
                              [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCACAAGTGATAAACCTTTGTGATTGTTGATCAATAGCAAAAACATTTACAAGAAGCATTTGACAATCAAAAAAAATAAATAAGGGTCTCATTAGGAAAATATTGCAAACCATTTATAGTTTCTTAAATTAAGGTCAGAAAGAAGTGAAATAGATAAAGCATAAAGAATAGTCTGTCCATTCAAAACTCACTGTACAAACATTGTGAACTTTCAAATTATCGGAGATCATCAGAAGAATGTTCAATAGTGTCGTCAAATATTACATGTTGACTTTGTTCATATAATGGGAGATCTGTGGCATGTGGA]

[+] EMBL AI975058             [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCACAAGTGATAAACCTTTGTGATTGTTGATCAATAGCAAAAACATTTACAAGAAGCATTTGACAATCAAAAAAAATAAATAAGGGTCTCATTAGGAAAATATTGCAAACCATTTATAGTTTCTTAAATTAAGGTCAGAAAGAAGTGAAATAGATAAAGCATAAAGAATAGTCTGTCCATTCAAAACTCACTGTACAAACATTGTGAACTTTCAAATTATCGGAGATCATCAGAAGAATGTTCAATAGTGTCGTCAAATATTACATGTTGACTTTGTTCATATAATGGGAGATCTGTGGCATGTGGA]
[+] EMBL BF936797             [                                                                                                                                                            GTCTCATTAGGAAAATATTGCAAACCATTTATAGTTTCTTAAATTAAGGTCAAAAAGAAGTGAAATAGATAAAGCATAAAGAATAGTCTGTACATTCAAAACTCACTGTACAAACATTGTGAACTTTCAAATTA                                                                                        ]


>consensus_8622#1 TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTCTTTCACAAGTGATAAACCTTTGTGATTGTTGATCAATAGCAAAAACATTTA CAAGAAGCATTTGACAATCAAAAAAAATAAATAAGGGTCTCATTAGGAAAATATTGCAAA CCATTTATAGTTTCTTAAATTAAGGTCAGAAAGAAGTGAAATAGATAAAGCATAAAGAAT AGTCTGTCCATTCAAAACTCACTGTACAAACATTGTGAACTTTCAAATTATCGGAGATCA TCAGAAGAATGTTCAATAGTGTCGTCAAATATTACATGTTGACTTTGTTCATATAATGGG AGATCTGTGGCATGTGGA



consensusID : consensus_8622#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence
                              [ATCACATGGGGTGGATTCATACACATCCTATTCAACGGGCTTTCTTATCGGCTGTTGATTTACATTGTCACTTGTCTTACCAGACTATGCTTCCGAAAGCGATTGCNAATGTATGCGCTCCTAAGTCGATTGATATTTAATTGTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAACAGGTTTCCATCCACATGCCACAGATCTCCCATTATATGAACANAGTCAACATGTAATATTTGACGACACTATTGAACATTCTTCTGATGATCTCCGATAATTTGAAAGTTCACAATGTTTGTACAGTGAGTTTTGAATGTACAGACTATTCTTTATGCTTTATCTATAATATTCTCCTA]

[-] EMBL CD135915             [ATCACATGGGGTGGATTCATACACATCCTATTCAACGGGCTTTCTTATCGGCTGTTGATTTACATTGTCACTTGTCTTACCAGACTATGCTTCCGAAAGCGATTGCNAATGTATGCGCTCCTAAGTCGATTGATATTTAATTGTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAACAGGTTTCCATCCACATGCCACAGATCTCCCATTATATGAACANAGTCAACATGTAATATTTGACGACACTATTGAACATTCTTCTGATGATCTCCGATAATTTGAAAGTTCACAATGTTTGTACAGTGAGTTTTGAATGTACAGACTATTCTTTATGCTTTATCTATAATATTCTCCTA]


>consensus_8622#2 ATCACATGGGGTGGATTCATACACATCCTATTCAACGGGCTTTCTTATCGGCTGTTGATT TACATTGTCACTTGTCTTACCAGACTATGCTTCCGAAAGCGATTGCNAATGTATGCGCTC CTAAGTCGATTGATATTTAATTGTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGT CAAAATGTAAAAAACAGGTTTCCATCCACATGCCACAGATCTCCCATTATATGAACANAG TCAACATGTAATATTTGACGACACTATTGAACATTCTTCTGATGATCTCCGATAATTTGA AAGTTCACAATGTTTGTACAGTGAGTTTTGAATGTACAGACTATTCTTTATGCTTTATCT ATAATATTCTCCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8622#0      TAATTAGACGGTCCTCTTGTGTTACGTTGGATTGTCAGAATTAGGTAAAAATACTGAAAT 60
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      GATTAAATAAAGAACCTGAATCCAACTTCCGTATTCCTCTGTAGTCATAAATTTTATTCA 120
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      CTAGAGACAAATCAGTCCTAAATTAAATAAGTGTAAGATTTGAACAAGGGACCGTCCAGT 180
consensus_8622#2      ----------ATCA--CATGGGGTGGATTCATACACATCCTATTCAACGGGCTTTCTTAT 48
consensus_8622#1      ----------------TACGCAGTACGGTAATGCAG---CTGCATGGCATGTTTTTTTTT 41
                                             *       *  *     *             *    *

consensus_8622#0      TCCTCCATGTAATATCTTAATTTATACATCTTTTGTCCAAAAATGAACCGAACTCCCCAA 240
consensus_8622#2      CGGCTGTTG----ATTTACATTGTCACTTGTCTTACCAGACTATGCTTCCGAAAGC--GA 102
consensus_8622#1      TTTTTTTT------TTTTTTTTTTTTTTTTTTTCTTTCACAAGTGA-TAAACCTTTGTGA 94
                             *      * *   **      * * *          **              *

consensus_8622#0      GAACGTCTGGATGCTCTCCTTAAGTCTGCCGAAGATT--TCACTATCATTCAA----AAT 294
consensus_8622#2      TTGCNAATGTATGCGCTCCT-AAGTCGATTGATATTTAATTGTTTTCATTAACTCCTGAT 161
consensus_8622#1      TTGTTGATCAATAG--CAAAAACATTTACAAGAAGCATTTGACAATCAAAAAA----AAT 148
                             *  **         *  *              *     ***   *      **

consensus_8622#0      ATAGACATTTCTCACTATGCACGGTTTATCCGGTCGATGTTTCGTTTGTCTGTC-CAGTT 353
consensus_8622#2      CACGGCATTTCATTCCTGTCAAAATGTAAAAAACAGGT-TTCCATCCACATGCCACAGAT 220
consensus_8622#1      AAATAAGGGTCTCATTAGG-AAAATATTGCAAACCATT-TATAGTTTCTTAAATTAAGGT 206
                               **         *   * *          * *    *           ** *

consensus_8622#0      CTCAGAAGCAGGTCAAAAAGAAAGAGCGTACATATTA-----TCCATAAGAGCTGTTTTG 408
consensus_8622#2      CTCCCA------TTATATGAACANAGTCAACATGTAA-----TATTTGACGACACTATTG 269
consensus_8622#1      CAGAAAG--AAGTGAAATAGATAAAGCATAAAGAATAGTCTGTCCATTCAAAACTCACTG 264
                      *    *      * * *   * * **   * *    *     *   *           **

consensus_8622#0      TGTATCC----GAGAATTACC--TAATCATA-ATGGTTACCATAGACTGGATCCACGTGT 461
consensus_8622#2      AACATTCTTCTGATGATCTCCGATAATTTGA-AAGTTCACAAT--GTTTGTACAGTGAGT 326
consensus_8622#1      TACAAACATTGTGAACTTTCAAATTATCGGAGATCATCAGAAGAATGTTCAATAGTGTCG 324
                         *  *         *  *   * **   * *   * *  *     *        *   

consensus_8622#0      TCAAAACGAACTCAAAAGTCTTGGTAAATTACTCCCAAAATCTGCCGAGTTCTTAAAGGA 521
consensus_8622#2      TTTGAATGTACAGACTATTCTTTATGCTTTATCTATAATATTCTCCTA------------ 374
consensus_8622#1      TCAAATATTACATGTTGACTTTGTTCATATAAT-GGGAGATCTGTGGCATGTGGA----- 378
                      *   *    **         **  *    **      * **                   

consensus_8622#0      TGATTTGAAAAAGAAGTACACAGAGGAATATGAGTTGTATAAAAAGTCACTTAGTATAAC 581
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      TGAATGGAAAGTGAATACAAATGGGCCAGTGGTACCCTTTCTTAAACATACTTCAAAACC 641
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      ATATGATGACTATCCAGTTGATCCCAACTCTTATAGACACTCCTTGTCTAATTTATCTTC 701
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      AGTTAATGGGACATTATATCCCGCTTTTAATAAAGCCCTCAACTATACTCCCGATGAACT 761
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      CCCAAGATCTTTGTACAGTAACTACACAGGAAATTATGGTTTAACGAAAACATATTTATC 821
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      TCGACATCTGATTAGTGACTTTTTGAGCCTAGCTATGTAAAACACTAAAGGAAATCGAGA 881
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      AACTTGTGGGACCCTATGTGGGAAATTAATTAGTGGCAATTTCTATATTACAAACCTTCT 941
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      AATTCCGAAACAAAGTGGTACTCCAGACTCTTGCGTTACGTATAATGAAGAGGAAATATT 1001
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      CGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCA 1061
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      AACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCC 1121
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      GGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATATTAAATGTTTTTCATTAAC 1181
consensus_8622#2      ------------------------------------------------------------
consensus_8622#1      ------------------------------------------------------------
                                                                                  

consensus_8622#0      TCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAAACAGGTTTC 1230
consensus_8622#2      -------------------------------------------------
consensus_8622#1      -------------------------------------------------
                                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)