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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1230 fasta sequence
[TAATTAGACGGTCCTCTTGTGTTACGTTGGATTGTCAGAATTAGGTAAAAATACTGAAATGATTAAATAAAGAACCTGAATCCAACTTCCGTATTCCTCTGTAGTCATAAATTTTATTCACTAGAGACAAATCAGTCCTAAATTAAATAAGTGTAAGATTTGAACAAGGGACCGTCCAGTTCCTCCATGTAATATCTTAATTTATACATCTTTTGTCCAAAAATGAACCGAACTCCCCAAGAACGTCTGGATGCTCTCCTTAAGTCTGCCGAAGATTTCACTATCATTCAAAATATAGACATTTCTCACTATGCACGGTTTATCCGGTCGATGTTTCGTTTGTCTGTCCAGTTCTCAGAAGCAGGTCAAAAAGAAAGAGCGTACATATTATCCATAAGAGCTGTTTTGTGTATCCGAGAATTACCTAATCATAATGGTTACCATAGACTGGATCCACGTGTTCAAAACGAACTCAAAAGTCTTGGTAAATTACTCCCAAAATCTGCCGAGTTCTTAAAGGATGATTTGAAAAAGAAGTACACAGAGGAATATGAGTTGTATAAAAAGTCACTTAGTATAACTGAATGGAAAGTGAATACAAATGGGCCAGTGGTACCCTTTCTTAAACATACTTCAAAACCATATGATGACTATCCAGTTGATCCCAACTCTTATAGACACTCCTTGTCTAATTTATCTTCAGTTAATGGGACATTATATCCCGCTTTTAATAAAGCCCTCAACTATACTCCCGATGAACTCCCAAGATCTTTGTACAGTAACTACACAGGAAATTATGGTTTAACGAAAACATATTTATCTCGACATCTGATTAGTGACTTTTTGAGCCTAGCTATGT-AAAACACTAAAGGAAATCGAGAAACTTGTGGGACCCTATGTGGGAAATTAATTAGTGGCAATTTCTATATTACAAACCTTCTAATTCCGAAACAAAGTGGTACTCCAGACTCTTGCGTTACGTATAATGAAGAGGAAATATTCGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCAAACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCCGGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATATTAAATGTTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAAACAGGTTTC]
[+] EMBL AI975153 [TAATTAGACGGTCCTCTTGTGTTACGTTGGATTGTCAGAATTAGGTAAAAATACTGAAATGATTAAATAAAGAACCTGAATCCAACTTCCGTATTCCTCTGTAGTCATAAATTTTATTCACTAGAGACAAATCAGTCCTAAATTAAATAAGTGTAAGATTTGAACAAGGGACCGTCCAGTTCCTCCATGTAATATCTTAATTTATACATCTTTTGTCCAAAAATGAACCGAACTCCCCAAGAACGTCTGGATGCTCTCCTTAAGTCTGCCGAAGATTTCACTATCATTCAAAATATAGACATTTCTCACTATGCACGGTTTATCCGGTCGATGTTTCGTTTGTCTGTCCAGTTCTCAGAAGCAGGTCAAAAAGAAAGAGCGTACATATTATCCATAAGAGCTGTTTTGTGTATCCGAGAATTACCTAATCATAATGGTTACCATAGACTGGATCCACGTGTTCAAAA ]
[+] EMBL CD083350 [ TTGTGT TCCGAGAATTACCTAATCAT ATGGTTACCATAGACTGGATCCACGTGTTCAAAACGAACTCAAAAGTCTTGGTAAATTACTCCCAAAATCTGCCGAGTTCTTAAAGGATGATTTGAAAAAGAAGTACACAGAGGAATATGAGTTGTATAAAAAGTCACTTAGTATAACTGAATGGAAAGTGAATACAAATGGGCCAGTGGTACCCTTTCTTAAACATACTTCAAAACCATATGATGACTATCCAGTTGATCCCAACTCTTATAGACACTCCTTGTCTAATTTATCTTCAGTTAATGGGACATTATATCCCGCTTTTAATAAAGCCCTCAACTATACTCCCGATGAACTCCCAAGATCTTTGTACAGTAACTACACAGGAAATTATGGTTTAACGAAAACATATTTATCTCGACATCTGATTAGTGACTTTTTGAGCCTAGCTATGT AAAACACTAAAGGAAATCGAGAAAC ]
[+] EMBL CD083863 [ ACTACACAGGAAATTATGGTTTAACGAAAACATATTTATCTCGACATCTGATTAGTGACTTTTTGAGCCTAGCTA GTAAAAACACTAAAGGAAATCGAGAAACTTGTGGGACCCTATGTGGGAAATTAATTAGTGGCAATTTCTATATTACAAACCTTCTAATTCCGAAACAAAGTGGTACTCCAGACTCTTGCGTTACGTATAATGAAGAGGAAATATTCGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCAAACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCCGGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATAT ]
[-] EMBL CD183133 [ CCAGACTCNTGCGTTACGTATAATGAAGAGGAAATATTCGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCAAACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCCGGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATATTAAATGTTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAAACAGGTTTC]
consensusID : consensus_8622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 378 fasta sequence
[TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCACAAGTGATAAACCTTTGTGATTGTTGATCAATAGCAAAAACATTTACAAGAAGCATTTGACAATCAAAAAAAATAAATAAGGGTCTCATTAGGAAAATATTGCAAACCATTTATAGTTTCTTAAATTAAGGTCAGAAAGAAGTGAAATAGATAAAGCATAAAGAATAGTCTGTCCATTCAAAACTCACTGTACAAACATTGTGAACTTTCAAATTATCGGAGATCATCAGAAGAATGTTCAATAGTGTCGTCAAATATTACATGTTGACTTTGTTCATATAATGGGAGATCTGTGGCATGTGGA]
[+] EMBL AI975058 [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCACAAGTGATAAACCTTTGTGATTGTTGATCAATAGCAAAAACATTTACAAGAAGCATTTGACAATCAAAAAAAATAAATAAGGGTCTCATTAGGAAAATATTGCAAACCATTTATAGTTTCTTAAATTAAGGTCAGAAAGAAGTGAAATAGATAAAGCATAAAGAATAGTCTGTCCATTCAAAACTCACTGTACAAACATTGTGAACTTTCAAATTATCGGAGATCATCAGAAGAATGTTCAATAGTGTCGTCAAATATTACATGTTGACTTTGTTCATATAATGGGAGATCTGTGGCATGTGGA]
[+] EMBL BF936797 [ GTCTCATTAGGAAAATATTGCAAACCATTTATAGTTTCTTAAATTAAGGTCAAAAAGAAGTGAAATAGATAAAGCATAAAGAATAGTCTGTACATTCAAAACTCACTGTACAAACATTGTGAACTTTCAAATTA ]
consensusID : consensus_8622#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence
[ATCACATGGGGTGGATTCATACACATCCTATTCAACGGGCTTTCTTATCGGCTGTTGATTTACATTGTCACTTGTCTTACCAGACTATGCTTCCGAAAGCGATTGCNAATGTATGCGCTCCTAAGTCGATTGATATTTAATTGTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAACAGGTTTCCATCCACATGCCACAGATCTCCCATTATATGAACANAGTCAACATGTAATATTTGACGACACTATTGAACATTCTTCTGATGATCTCCGATAATTTGAAAGTTCACAATGTTTGTACAGTGAGTTTTGAATGTACAGACTATTCTTTATGCTTTATCTATAATATTCTCCTA]
[-] EMBL CD135915 [ATCACATGGGGTGGATTCATACACATCCTATTCAACGGGCTTTCTTATCGGCTGTTGATTTACATTGTCACTTGTCTTACCAGACTATGCTTCCGAAAGCGATTGCNAATGTATGCGCTCCTAAGTCGATTGATATTTAATTGTTTTCATTAACTCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAACAGGTTTCCATCCACATGCCACAGATCTCCCATTATATGAACANAGTCAACATGTAATATTTGACGACACTATTGAACATTCTTCTGATGATCTCCGATAATTTGAAAGTTCACAATGTTTGTACAGTGAGTTTTGAATGTACAGACTATTCTTTATGCTTTATCTATAATATTCTCCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8622#0 TAATTAGACGGTCCTCTTGTGTTACGTTGGATTGTCAGAATTAGGTAAAAATACTGAAAT 60
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 GATTAAATAAAGAACCTGAATCCAACTTCCGTATTCCTCTGTAGTCATAAATTTTATTCA 120
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 CTAGAGACAAATCAGTCCTAAATTAAATAAGTGTAAGATTTGAACAAGGGACCGTCCAGT 180
consensus_8622#2 ----------ATCA--CATGGGGTGGATTCATACACATCCTATTCAACGGGCTTTCTTAT 48
consensus_8622#1 ----------------TACGCAGTACGGTAATGCAG---CTGCATGGCATGTTTTTTTTT 41
* * * * * *
consensus_8622#0 TCCTCCATGTAATATCTTAATTTATACATCTTTTGTCCAAAAATGAACCGAACTCCCCAA 240
consensus_8622#2 CGGCTGTTG----ATTTACATTGTCACTTGTCTTACCAGACTATGCTTCCGAAAGC--GA 102
consensus_8622#1 TTTTTTTT------TTTTTTTTTTTTTTTTTTTCTTTCACAAGTGA-TAAACCTTTGTGA 94
* * * ** * * * ** *
consensus_8622#0 GAACGTCTGGATGCTCTCCTTAAGTCTGCCGAAGATT--TCACTATCATTCAA----AAT 294
consensus_8622#2 TTGCNAATGTATGCGCTCCT-AAGTCGATTGATATTTAATTGTTTTCATTAACTCCTGAT 161
consensus_8622#1 TTGTTGATCAATAG--CAAAAACATTTACAAGAAGCATTTGACAATCAAAAAA----AAT 148
* ** * * * *** * **
consensus_8622#0 ATAGACATTTCTCACTATGCACGGTTTATCCGGTCGATGTTTCGTTTGTCTGTC-CAGTT 353
consensus_8622#2 CACGGCATTTCATTCCTGTCAAAATGTAAAAAACAGGT-TTCCATCCACATGCCACAGAT 220
consensus_8622#1 AAATAAGGGTCTCATTAGG-AAAATATTGCAAACCATT-TATAGTTTCTTAAATTAAGGT 206
** * * * * * * ** *
consensus_8622#0 CTCAGAAGCAGGTCAAAAAGAAAGAGCGTACATATTA-----TCCATAAGAGCTGTTTTG 408
consensus_8622#2 CTCCCA------TTATATGAACANAGTCAACATGTAA-----TATTTGACGACACTATTG 269
consensus_8622#1 CAGAAAG--AAGTGAAATAGATAAAGCATAAAGAATAGTCTGTCCATTCAAAACTCACTG 264
* * * * * * * ** * * * * * **
consensus_8622#0 TGTATCC----GAGAATTACC--TAATCATA-ATGGTTACCATAGACTGGATCCACGTGT 461
consensus_8622#2 AACATTCTTCTGATGATCTCCGATAATTTGA-AAGTTCACAAT--GTTTGTACAGTGAGT 326
consensus_8622#1 TACAAACATTGTGAACTTTCAAATTATCGGAGATCATCAGAAGAATGTTCAATAGTGTCG 324
* * * * * ** * * * * * * *
consensus_8622#0 TCAAAACGAACTCAAAAGTCTTGGTAAATTACTCCCAAAATCTGCCGAGTTCTTAAAGGA 521
consensus_8622#2 TTTGAATGTACAGACTATTCTTTATGCTTTATCTATAATATTCTCCTA------------ 374
consensus_8622#1 TCAAATATTACATGTTGACTTTGTTCATATAAT-GGGAGATCTGTGGCATGTGGA----- 378
* * ** ** * ** * **
consensus_8622#0 TGATTTGAAAAAGAAGTACACAGAGGAATATGAGTTGTATAAAAAGTCACTTAGTATAAC 581
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 TGAATGGAAAGTGAATACAAATGGGCCAGTGGTACCCTTTCTTAAACATACTTCAAAACC 641
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 ATATGATGACTATCCAGTTGATCCCAACTCTTATAGACACTCCTTGTCTAATTTATCTTC 701
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 AGTTAATGGGACATTATATCCCGCTTTTAATAAAGCCCTCAACTATACTCCCGATGAACT 761
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 CCCAAGATCTTTGTACAGTAACTACACAGGAAATTATGGTTTAACGAAAACATATTTATC 821
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 TCGACATCTGATTAGTGACTTTTTGAGCCTAGCTATGTAAAACACTAAAGGAAATCGAGA 881
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 AACTTGTGGGACCCTATGTGGGAAATTAATTAGTGGCAATTTCTATATTACAAACCTTCT 941
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 AATTCCGAAACAAAGTGGTACTCCAGACTCTTGCGTTACGTATAATGAAGAGGAAATATT 1001
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 CGAGTACTTAGACAGGAGGCAGCTGATCACATTGGGTTGGATTCATACACATCCTACTCA 1061
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 AACGGCTTTCTTATCGGCTGTTGATCTACATTGTCAACTGTCTTACCAGACTATGCTTCC 1121
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 GGAAGCGATTGCAATTGTATGCGCTCCTAAGTTCGATGATATTAAATGTTTTTCATTAAC 1181
consensus_8622#2 ------------------------------------------------------------
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 TCCTGATCACGGCATTTCATTCCTGTCAAAATGTAAAAAAACAGGTTTC 1230
consensus_8622#2 -------------------------------------------------
consensus_8622#1 -------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||