cluster # 8627

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Schistosoma mansoni
cluster # 8627 cluster # 8627 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8627#0 length = 641 sequences # 4

consensus_8627#1 length = 447 sequences # 3

consensusID : consensus_8627#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 641
fasta sequence

                              [CCTGAGGTTGATTGGAATGTTTGAGATACCCTTATTAGAGCCCGTGATTCTGTCCGTTTCCTGTTGGCGATCAGCCACCAGATATCGAGACTCAAATCCGCAACATGATCATTGAATTTATAGAGAGAGATTCCTGTCTTATTTTGGCTGTTAGCCCTGCTAATTCGGACCTCGCTAATTCCGATGCCTTAAAACTTGCTAAGGAATATGACCCACAGGGTCTGCGTACTATCGGGGTATTAACAAAGTTAGATTTGATGGATGAAGGAACAGATGCACAGGAAATTCTTGAAAATAGATTGCTCCCATTAAGAAGAGGTTATATAGGCGTTGTCAACAGAAGCCAGCGAGATATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTTTTCCTTTCACATCCCAGTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACTTAATCAACAACTAACGAATCATATCCGTGATACTCTGCCGCATCTACGTAATCGGTTACAAACCCAACTAATTAGTTTGGAAAAAGAAGTTTCTGACTTTCGTAATTATCGTCCAGATGATCCAGCTTACAAAACAAAAGCATTGCTACAGTGATTAGTTCTTTTTTCT]

[+] EMBL CD071618             [CCTGAGGTTGATTGGAATGTTTGAGATACCCTTATTAGAGCCCGTGATTCTGTCCGTTTCCTGTTGGCGATCAGCCACCAGATATCGAGACTCAAATCCGCAACATGATCATTGAATTTATAGAGAGAGATTCCTGTCTTATTTTGGCTGTTAGCCCTGCTAATTCGGACCTCGCTAATTCCGATGCCTTAAAACTTGCTAAGGAATATGACCCACAGGGTCTGCGTACTATCGGGGTATTAACAAAGTTAGATTTGATGGATGAAGGAACAGATGCACAGGAAATTCTTGAAAATAGATTGCTCCCATTAAGAAGAGGTTATATAGGCGTTGTCAACAGAAGCCAGCGAGATATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTTTT                                                                                                                                                                                                                                           ]
[+] EMBL CD084435             [                                                                                                                                     gtagCTTATTTTGGCTGTTAGCCCTGCT ATTCGGACCTCGCTAATTCCGATGCCTTAAAACTTGCTAAGGAATATGACCCACAGGGTCTGCGTACTATCGGGGTATTAACAAAGTTAGATTTGATGGATGAAGGAACAGATGCACAGGAAATTCTTGAAAATAGATTGCTCCCATTAAGAAGAGGTTATATAGGCGTTGTCAACAGAAGCCAGCGAGATATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTTTTCCTTTCACATCCCAGTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACTTAATCAACAACTAACGAATCATATCCGTGATACTCTGCCGCATCTACGTAATCGGTTACAAACCCAACTAATTAGTTTGGAAAAAGAAGTTTCTGACTTTCGTAATTATCGTCCAGATGATCCAGCTTACAAAACAAAAGCATTGCTACAGTGATTAGTTCTTTTTTCT]
[+] EMBL CD129531             [                                                                                                                                                                                                                                                                                                                                                               ATATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTTTTCCTTTCACATCCCAGTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACTTAATCAACAACTAACGAATCATATCCGTGATACTCTGCCGCATCTACGTAATCGGTTACAAACCCAACTAATTAGTTTGG                                                                                         ]
[+] EMBL CD066639             [                                                                                                                                                                                                                                                                                                                                                               ATATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGTACGTAGATTTTTCCTTTCACATCCCAGTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACTTAATCAACAACTAACGAATCATATCCGTGATACTCTGCCGCATCTACGTAATCGGTTAC                                                                                                              ]




>consensus_8627#0
CCTGAGGTTGATTGGAATGTTTGAGATACCCTTATTAGAGCCCGTGATTCTGTCCGTTTC
CTGTTGGCGATCAGCCACCAGATATCGAGACTCAAATCCGCAACATGATCATTGAATTTA
TAGAGAGAGATTCCTGTCTTATTTTGGCTGTTAGCCCTGCTAATTCGGACCTCGCTAATT
CCGATGCCTTAAAACTTGCTAAGGAATATGACCCACAGGGTCTGCGTACTATCGGGGTAT
TAACAAAGTTAGATTTGATGGATGAAGGAACAGATGCACAGGAAATTCTTGAAAATAGAT
TGCTCCCATTAAGAAGAGGTTATATAGGCGTTGTCAACAGAAGCCAGCGAGATATAGATG
GACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTTTTCCTTTCACATCCCA
GTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACTTAATCAAC
AACTAACGAATCATATCCGTGATACTCTGCCGCATCTACGTAATCGGTTACAAACCCAAC
TAATTAGTTTGGAAAAAGAAGTTTCTGACTTTCGTAATTATCGTCCAGATGATCCAGCTT
ACAAAACAAAAGCATTGCTACAGTGATTAGTTCTTTTTTCT

consensusID : consensus_8627#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 447
fasta sequence

                              [GCTATACGAAGCTTCTGCAATTATAGTTAGTGCAAAATGTATGGAAATGAAGGGATGGAAAGGCTTATCCCTCTTGTTAATAAGCTTCAAGATGCTTTTGCTTCCCTAAACCTTCCGCTGAACCTTGATTTACCTCAGATTGCGGTTGTAGGAAGCCAAAGCGCTGGTAAAAGCTCAGTGCTGGAAAACTTTGTGGGGCGTGATTTCTTACCGAGAGGTAGTGGTATCGTTACAAGGAGACCGCTTATTCTTCAGCTGGTACATGATAAATCCGTTGAATATGGCGAATTTATTCACTGTAAAAATAAAAAGTTCACAGATTTCGATGATATCCGACGAGAAATTGAACAGGAAACGGACAGAATCACGGGCTCTAATAAGGGTATCTCAAACATTCCAATCAACCTCAGGATTCATTCCCCCAGCGTCCTTAATCTTACCCTTATT]

[-] EMBL CD179119             [GCTATACGAAGCTTCTGCAATTATAGTTAGTGCAAAATGTATGGAAATGAAGGGATGGAAAGGCTTATCCCTCTTGTTAATAAGCTTCAAGATGCTTTTGCTTCCCTAAACCTTCCGCTGAACCTTGATTTACCTCAGATTGCGGTTGTAGGAAGCCAAAGCGCTGGTAAAAGCTCAGTGCTGGAAAACTTTGTGGGGCGTGATTTCTTACCGAGAGGTAGTGGTATCGTTACAAGGAGACCGCTTATTCTTCAGCTGGTACATGATAAATCCGTTGAATATGGCGAATTTATTCACTGTAAAAATAAAAAGTTCACAGATTTCGATGATATCCGACGAGAAATTGAACAGGAAACGGACAGAATCACGGGCTCTAATAAGGGTATCTCAAACATTCCAATCAACCTCAGGATTCATTCCCCCAGCGTCCTTAATCTTAC       ]
[+] EMBL CD178352             [                                                       TGGAAGGGCTTATCCCTCTTGTTAATAAGCTTCAAGATGCTTTTGCTTCCCTAAACCTTCCGCTGAACCTTGATTTACCTCAGATTGCGGTTGTAGGAAGCCAAAGCGCTGGTAAAAGCTCAGTGCTGGAAAACTTTGTGGGGCGTGATTTCTTACCGAGAGGTAGTGGTATCGTTACAAGGAGACCGCTTATTCTTCAGCTGGTACATGATAAATCCGTTGAATATGGCGAATTTATTCACTGTAAAAATAAAAAGTTCACAGATTTCGATGATATCCGACGAGAAATTGAACAGGAAACGGACAGAATCACGGGCTCTAATAAGGGTATCTCAAACATTCCAATCAACCTCAGGATTCATTCCCCCAGCGTCCTTAATCTTACCCTTATT]
[+] EMBL CD155568             [                                                                                                                                                                                                                                                        TCTTCAGCTGGTACATGATAAATCCGTTGAATATGGCGAATTTATTCACTGTAAAAATAAAAAGTTCACAGATTTCGATGATATCCGACGAGAAATTGAACAGGAAACGGACAGAATCACGGGCTCTAATAAGGGTATCTCAAACATTCCAATCAACCTCAGGATTCATTCCCCCAGCGTCCTTAATCTTACC      ]




>consensus_8627#1
GCTATACGAAGCTTCTGCAATTATAGTTAGTGCAAAATGTATGGAAATGAAGGGATGGAA
AGGCTTATCCCTCTTGTTAATAAGCTTCAAGATGCTTTTGCTTCCCTAAACCTTCCGCTG
AACCTTGATTTACCTCAGATTGCGGTTGTAGGAAGCCAAAGCGCTGGTAAAAGCTCAGTG
CTGGAAAACTTTGTGGGGCGTGATTTCTTACCGAGAGGTAGTGGTATCGTTACAAGGAGA
CCGCTTATTCTTCAGCTGGTACATGATAAATCCGTTGAATATGGCGAATTTATTCACTGT
AAAAATAAAAAGTTCACAGATTTCGATGATATCCGACGAGAAATTGAACAGGAAACGGAC
AGAATCACGGGCTCTAATAAGGGTATCTCAAACATTCCAATCAACCTCAGGATTCATTCC
CCCAGCGTCCTTAATCTTACCCTTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8627#0      CCTGAGGTTGATTGGAATGTTTGAGATACCCTTATTAGAGCCCGTGATTCTGTCCGTTTC 60
consensus_8627#1      ------------------------------------------------------------
                                                                                  

consensus_8627#0      CTGTTGGCGATCAGCCACCAGATAT-CGAGACTCAAATCCGCAAC-ATGATCATTGAATT 118
consensus_8627#1      --------------------GCTATACGAAGCT----TCTGCAATTATAGTTAGTGCAAA 36
                                          * *** ***  **    ** ****  **  * * ** *  

consensus_8627#0      TATAGAGAGAGATTCCTGTCTTATTTTGGCTGTTAGCCCTGCTAATTCGGACCTCGCTAA 178
consensus_8627#1      -ATGTATGGAAATGAAGGGATGGAAAGGCTTATCCCTCTTGTTAATAAGCTTCAAGATGC 95
                       **  *  ** **    *  *      *  * *    * ** ****  *   *  * *  

consensus_8627#0      TTCCGATGCCTTAAAACTTGCTAAGGAATATGACCCACAG-GGTCTGCGTACTATCGGGG 237
consensus_8627#1      TTTTGCTTCCCTAAACCTTCCGCTGAACCTTGATTTACCTCAGATTGCG-GTTGTAGGAA 154
                      **  * * ** **** *** *   * *   ***   **    *  ****   * * **  

consensus_8627#0      TATTAACAA--AGTTAGATTTGATGGATGAAGGAACAGATGCACAGGAAATTCTTGAAAA 295
consensus_8627#1      GCCAAAGCGCTGGTAAAAGCTCAGTGCTGGAAAACTTTGTGGGGCGTGATTTCTTACCGA 214
                          **      ** * *  * *  * ** *  *     **    *  * *****    *

consensus_8627#0      TAGAT--TGCTCCCATTAAGAAGAGGTTATATAGGCGTTGTCAACAGAAGCCAGCGAGAT 353
consensus_8627#1      GAGGTAGTGGTATCGTTACAAGGAGACCGCTTAT---TCTTCAGCTGGTACATGATAAAT 271
                       ** *  ** *  * ***  * ***      **    *  *** * *   *  *  * **

consensus_8627#0      ATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTT-TTCCTTTC 412
consensus_8627#1      CC-GTTGAATATGGCGAATTTATT--CACTGTAAAAATAAAAAGTTCACAGATTTCGATG 328
                         * ** *      **  * * *    ** *  **    ** **  *    ** *  * 

consensus_8627#0      ACATCCCAGTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACT 472
consensus_8627#1      ATATCCGACGAGAAATTGAACAGG-AAACGGACAGAATCACGGGCTCTAATAAGGGTATC 387
                      * **** *       *   *  *   * ** *  * * * *    ***   * *  **  

consensus_8627#0      TAATCAACAACTAACGAATCATATCCGTGATACTCTGCCGCATC-TACGTAATCGGTTAC 531
consensus_8627#1      TCA-----AACATTCCAATCAACCTCAGGATTCATTCCCCCAGCGTCCTTAATC--TTAC 440
                      * *     ***   * *****    *  *** *  * ** ** * * * *****  ****

consensus_8627#0      AAACCCAACTAATTAGTTTGGAAAAAGAAGTTTCTGACTTTCGTAATTATCGTCCAGATG 591
consensus_8627#1      ---CCTTATT-------------------------------------------------- 447
                         **  * *                                                  

consensus_8627#0      ATCCAGCTTACAAAACAAAAGCATTGCTACAGTGATTAGTTCTTTTTTCT 641
consensus_8627#1      --------------------------------------------------