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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence
[CTCCAGGCCAANAATTTGGCACGAGGCGATATGGGCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGTATGTAAACCAACTAATTATATCATGCCCTAAGGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCGTAAGATCCATAGTATACTCTTTTTAAAGCTATTTA-ACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACACCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGTAGTTACAATCAAACAAGTATCTAAAGAAACTCCTTTTTAACATGCTATAAGATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTNTCTACATTTCATCTCAAGATATAAGATAAACCATAT-ATTGTAAATATAAGACANACC]
[+] EMBL CD081070 [CTCCAGGCCAANAATTTGGCACGAGGCGATATGGGCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGTATGTAAACCAACTAATTATATCATGCCCTAAGGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCGTAAGATCCATAGTATACTCTTTTTAAAGCTATTTA ACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACACCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGTAGTTACAATCAAACAAGTATCTAAAGAAACTCCTTTTTAACATGCTATAAGATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTNTCTACATTTCATCTCAAGATATAAGATAAACCATAT ATTGTAAATATAAGACANAC ]
[-] EMBL CD074892 [ AGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGTATGTAAACCAACTAATTATATCATGCCCTAAGGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCGTAAGATCCATAGTATACTCTTTTTAAAGCTATTTAGACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACACCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGTAGTTACAATCAAACAAGTATCTAAAGAAACTCCTTTTTAACATGCTATAAGATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGAT AACCATATAATTGTAAATATAAGACAAACC]
consensusID : consensus_8628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 622 fasta sequence
[CAANACTCTCGGTACGAGGGGCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACA-CCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGCAGTTACAATCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGACAAACCTAATACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD082172 [CAANACTCTCGGTACGAGGGCCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACA CCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGCAGTTACAATCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGACAAAC ]
[+] EMBL AI977464 [ gatatGGGCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACA CCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGCAGTTACAATCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGA ]
[-] EMBL CD075788 [ GCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACACCCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGCAGTTACAATCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGACAAACCc ]
[-] EMBL AI395082 [ caAAATGCAAGTTTGAGCCACCTTTATGCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGCAGTTACAATCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTATACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGACAAACCTAATACTTCAAAAAAAAAAAAAAAA ]
[-] EMBL AI394976 [ TCCCTCTTGGTTGAGAAAAAACATTGGAGACCGGCAGTTACAACCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGACAAACCTAATACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8628#0 CTCCAGGCCAANAATTTGGCACGAGGCGATATGGGCGATTATGCTGAAGCAGAGGGTATC 60
consensus_8628#1 -------CAANACTCTCGGTACGAG-------GGGCGATTATGCTGAAGCAGAGGGTATC 46
* * * ** ***** ****************************
consensus_8628#0 GCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGTATGT 120
consensus_8628#1 GCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCG----- 101
*******************************************************
consensus_8628#0 AAACCAACTAATTATATCATGCCCTAAGGGTTTTGTAGCCAAGCCCATGAAGAACCCTGA 180
consensus_8628#1 -----------------------------GTTTTGTAGCCAAGCCCATGAAGAACCCTGA 132
*******************************
consensus_8628#0 TGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCGTAAGATC 240
consensus_8628#1 TGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGC-------- 184
****************************************************
consensus_8628#0 CATAGTATACTCTTTTTAAAGCTATTTAACATTGTGGGAGGGAGGATTGTTCAGTCTTAG 300
consensus_8628#1 ----------------------------ACATTGTGGGAGGGAGGATTGTTCAGTCTTAG 216
********************************
consensus_8628#0 AATGTACTTCAAGCCGGAATATCCAACAACACCTCCCAAATGCAAGTTTGAGCCACCTTT 360
consensus_8628#1 AATGTACTTCAAGCCGGAATATCCAACAACACCTCCCAAATGCAAGTTTGAGCCACCTTT 276
************************************************************
consensus_8628#0 ATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAA 420
consensus_8628#1 ATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAA 336
************************************************************
consensus_8628#0 ACATTGGAGACCGGTAGTTACAATCAAACAAGTATCTAAAGAAACTCCTTTTTAACATGC 480
consensus_8628#1 ACATTGGAGACCGGCAGTTACAATCAAACAA----------------------------- 367
************** ****************
consensus_8628#0 TATAAGATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCT 540
consensus_8628#1 ------ATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCT 421
******************************************************
consensus_8628#0 CAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAA 600
consensus_8628#1 CAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAA 481
************************************************************
consensus_8628#0 AAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTNTCTACATTTCATCTCAAGATA 660
consensus_8628#1 AAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATA 541
************************************** *********************
consensus_8628#0 TAAGATAAACCATATA-TTGTAAATATAAGACANACC----------------------- 696
consensus_8628#1 TAAGATAA-CCATATAATTGTAAATATAAGACAAACCTAATACTTCAAAAAAAAAAAAAA 600
******** ******* **************** ***
consensus_8628#0 ----------------------
consensus_8628#1 AAAAAAAAAAAAAAAAAAAAAA 622
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||