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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1087 fasta sequence
[TGATGTTACAGATTTGCTTTTAGTTATCAATTATGACTGTCCAAGTCACTATGAGGATTATGTTCATCGTTGTGGGCGTACTGGACGTGCTGGTCGCAAAGGGTTCGCCTATACTTTCCTCACTCCCGACCAGGAGCGCAGTGCTGGAGATGTTGTTCGAGCATTCAAGCAGAGTGGTCAAAAACCACCGGAGGAGCTAATGAATATGTGGAGTGCATACAAGATCAGAATGGAACATGAAGGAAAAAAGGTATATGGTTCTTCAGGCTTCCGTGGTAAAGGATTCATGTTTGATGAAGTGGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGACTCAGATGACGAAGTTGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTTGGCCACGAAAACAAAAATCAAAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGAAACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCCTTAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGCTGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGCTGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGTACAGATGACAGACCACTGTATTTACGCTCCGAGGCTGCTAAGTAAAGACAGTCGCTTTGGCTAAAAAGAATAGCGTATATAAGAGATT]
[+] EMBL CD125487 [TGATGTTACAGATTTGCTTTTAGTTATCAATTATGACTGTCCAAGTCACTATGAGGATTATGTTCATCGTTGTGGGCGTACTGGACGTGCTGGTCGCAAAGGGTTCGCCTATACTTTCCTCACTCCCGACCAGGAGCGCAGTGCTGGAGATGTTGTTCGAGCATTCAAGCAGAGTGGTCAAAAACCACCGGAGGAGCTAATGAATATGTGGAGTGCATACAAGATCAGAATGGAACATGAAGGAAAAAAGGTATATGGTTCTTCAGGCTTCCGTGGTAAAGGATTCATGTTTGATGAAGTGGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGACTCAGATGACGAAGTTGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTTGGCCACGAAAACAAAAATCAAAGATGTAcc ]
[+] EMBL CD194937 [ CCACCGGAGGAACTAATGAATATGTGGAATGCATACAAGATCAGAATGGAACATGAAGGAAAAAAGGTATATGGTTCTTCAGGTTTCCGTGGTAAAGGATTCATGTTTGATGAAGTGGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGATTCAGATGACGAAGATGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTTGGCCACGAAAACAAAAATCAAAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGAAACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCC TAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCAC ]
[+] EMBL CD192887 [ AAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGAAACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCCTTAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGCTGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGCTGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCGCGAGATGCTCAATCACCTCAG ]
[+] EMBL CD188049 [ CAGTCGTAAACGCAGCCTTAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGCTGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGCTGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTT ]
[-] EMBL CD192571 [ AAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCGCGAGATGCTCAATCACCTCAGT ]
[+] EMBL AA917191 [ AGGTGGTGTATCACTGGTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGTACAGATGACAGACCACTGTATTTACGCTCCGAGGCTGCTAAGTAAAGACAGTCGCTTTGGCTAAAAAGAATAGCGTATATAAGAGATT]
consensusID : consensus_8631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence
[ACCAAACACCAGGCGCTGTTGATGAGGATGTTGCTGTTCTAAACACTAGTTCGGAAAGTGACATGTTAGCAAGATACGACGACGATTAGTTATCAATGACTTCGCACAAAACGTCAGGTGGCGTATCACTGTTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGGTACAGATGACAGACCACTGTATTTATGTATTGAGGCTGTCAATGAAAGACAAGTCGCTTTGGCTAAAAAAGAAATTATGCGTATTATTAAAGAAGAATTAGTTAAATTGCAATCTGGTAATTCAATAAATCGCGGACGATACAAAGTTGTTTAATTTATGATTTAAGTATTTCCACTTGAATTGTTGTACATATTCTGAGAGTAATGACATCTACATTAGCAATCGCGGTTTATTCATATAAATAAATGCTGTCTTGTCATAAAAAAAAAAAAAAAA]
[-] EMBL AI395107 [ACCAAACACCAGGCGCTGTTGATGAGGATGTTGCTGTTCTAAACACTAGTTCGGAAAGTGACATGTTAGCAAGATACGACGACGATTAGTTATCAATGACTTCGCACAAAACGTCAGGTGGCGTATCACTGTTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGGTACAGATGACAGACCACTGTATTTATGTATTGAGGCTGTCAATGAAAGACAAGTCGCTTTGGCTAAAAAAGAAATTATGCGTATTATTAAAGAAGAATTAGTTAAATTGCAATCTGGTAATTCAATAAATCGCGGACGATACAAAGTTGTTTAATTTATGATTTAAGTATTTCCACTTGAATTGTTGTACATATTCTGAGAGTAATGACATCTACATTAGCAATCGCGGTTTATTCATATAAATAAATGCTGTCTTGTCATAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8631#0 TGATGTTACAGATTTGCTTTTAGTTATCAATTATGACTGTCCAAGTCACTATGAGGATTA 60
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 TGTTCATCGTTGTGGGCGTACTGGACGTGCTGGTCGCAAAGGGTTCGCCTATACTTTCCT 120
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 CACTCCCGACCAGGAGCGCAGTGCTGGAGATGTTGTTCGAGCATTCAAGCAGAGTGGTCA 180
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 AAAACCACCGGAGGAGCTAATGAATATGTGGAGTGCATACAAGATCAGAATGGAACATGA 240
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 AGGAAAAAAGGTATATGGTTCTTCAGGCTTCCGTGGTAAAGGATTCATGTTTGATGAAGT 300
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 GGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGA 360
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 CTCAGATGACGAAGTTGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTT 420
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 GGCCACGAAAACAAAAATCAAAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGA 480
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 AACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCCTTAGCACTTGC 540
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 TCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGT 600
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 TCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGC 660
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 GGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGC 720
consensus_8631#1 ------------------------------------------------------------
consensus_8631#0 TGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGC 780
consensus_8631#1 --------------------------------------------ACCAAACACCAGGCGC 16
* **************
consensus_8631#0 TGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATA 840
consensus_8631#1 TGTTGATGAGGATGTTGCTGTTCTAAACACTAGTTCGGAAAGTGACATGTTAGCAAGATA 76
** *********** ***** * ************* ********** * ******
consensus_8631#0 CGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCG 900
consensus_8631#1 CGACGACGA-TTAGTTATCAATGACTTCGCACAAAACGTCAGGTGGCGTATCACTGTTCG 135
*** ** ** ****************** *************************** ***
consensus_8631#0 CGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTA 960
consensus_8631#1 CGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTA 195
************************************************************
consensus_8631#0 TATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAG-TACAGATGACAGACCACTGTA 1019
consensus_8631#1 TATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGGTACAGATGACAGACCACTGTA 255
************************************** *********************
consensus_8631#0 TTTACGCTCCGAGGCTGCTAAGTAAAGACA-GTCGCTTTGGCTAAAAAGAATA----GCG 1074
consensus_8631#1 TTTATGTATTGAGGCTGTCAATGAAAGACAAGTCGCTTTGGCTAAAAAAGAAATTATGCG 315
**** * ******* ** ******* ***************** * * ***
consensus_8631#0 TAT-ATAAGAGATT---------------------------------------------- 1087
consensus_8631#1 TATTATTAAAGAAGAATTAGTTAAATTGCAATCTGGTAATTCAATAAATCGCGGACGATA 375
*** ** * ***
consensus_8631#0 ------------------------------------------------------------
consensus_8631#1 CAAAGTTGTTTAATTTATGATTTAAGTATTTCCACTTGAATTGTTGTACATATTCTGAGA 435
consensus_8631#0 ------------------------------------------------------------
consensus_8631#1 GTAATGACATCTACATTAGCAATCGCGGTTTATTCATATAAATAAATGCTGTCTTGTCAT 495
consensus_8631#0 ----------------
consensus_8631#1 AAAAAAAAAAAAAAAA 511
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||