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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8632#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1140 fasta sequence
[TGTCATCACTTCTAACATTAACATACCAAAAGCGTAAATATCGACTTTTTCATCATATTTTTCATCAAAAATCTCTGGCGCCATAAAACCCAATGTACCCAACATAGTTTTTCTTCC-ACTATTACTCACATGA-GTTGCCAAA-CCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTCTGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGGAGAATAGGAGGTTGGATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAGGGGAAATTTAAGGATGCACCTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCTTTAATTTGATTGTCCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTAAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATCTTGAGATTATGTTTTATCTAGCGACTACATTTCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCATTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTTCTTTTGTTTTCTTGCGGTCAGCGG-AAGTTGCAGAAGCTTGCTGGTCGTTTGGCTGACCGCAATTCACAACACCAATTGATTCCCCAATGACAGGAACCCCAGCAATATTTGGNTGTGATAATAAATCTTCATCATCTGAGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTTTTTTTGTAGTTGACCGAGAGCCACTATCCCTTCGAAAAGCTGACCGGTTCAACAAATCAGTATCTTCTGTCTTATGAACGGACGTATCCGTAGCATTACCATCAGCACCAGAGAAAGATTCAGTAGCCTGCTCATTCTTCGAAACCTGCTGGTGTATTGATGCGTTCATTTATCAAGGGACTGAGAATATATATTCAA]
[+] EMBL CD068985 [TGTCATCACTTCTAACATTAACATACCAAAAGCGTAAATATCGACTTTTTCATCATATTTTTCATCAAAAATCTCTGGCGCCATAAAACCCAATGTACCCAACATAGTTTTTCTTCC ACTATTACTCACATGA GTTGCCAAA CCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTCTGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGGAGAATAGGAGGTTGGATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAGGGGAAATTTAAGGATGCACCTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACGACTCCTTTTTCTTTAATTTGATTGTCCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTAAACA ]
[+] EMBL CD060449 [ tgTTTCTTCCGACTATTACTCACATGAGGTTGCCAAAGCCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTCTGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGAAGAATAGGAGGTTGGATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAGGGGAAATTTAAGGATGCA CTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCT ]
[-] EMBL CD201631 [ ttCGC TTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCTTCAATTTGATTGTTCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATCTTGAGATTATGTTTTATCTAGCGACTACATTTCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCATTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTT ]
[+] EMBL CD070384 [ TCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCATTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTTCTTTTGTTTTCTTGCGGTCAGCGG AAGTTGCAGAAGCTTGCTGGTCGTTTGGCTGACCGCAATTCACAACACCAATTGATTCCCCAATGACAGGAACCCCAGCAATATTTGGNTGTGATAATAAATCTTCATCATCTGAGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTT ]
[-] EMBL CD070466 [ GCGGNAAGTTGCAGAAGCTTGCTGGTCG TTGGCTGACCGCAATTCACAACACCAATTGATTCCNCAATGTCAGGAACCCCAGCAATATTTGGTTGTGATAATAAATCTTCATCATCTGAGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTTTTTTTGTAGTTGACCGAGAGCCACTATCCCTTCGAAAAGCTGACCGGTTCAACAAATCAGTATCTTCTGTCTTATGAACGGACGTATCCGTAGCATTACCATCAGCACCAGAGAAAGATTCAGTAGCCTGCTCATTCT ]
[-] EMBL CD150663 [ CGTATCCGTAGCATTACCATCAGCTCCAGAGAAAGATTCAGTAGCCTGCTCATTCTTCGAAACCTGCTGGTGTATTGATGCGTTCATTTATCAAGGGACTGAGAATATATATTCAA]
consensusID : consensus_8632#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence
[AATGACAACTCCTTTTTCTTCAATTTGATTGTTCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATAGGGACTGAGAATATATGATCCAATACAAGTAATGCCTTTGGTCCGATCGTTAA]
[+] EMBL CD159936 [AATGACAACTCCTTTTTCTTCAATTTGATTGTTCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATAGGGACTGAGAATATATGATCCAATACAAGTAATGCCTTTGGTCCGATCGTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8632#0 TGTCATCACTTCTAACATTAACATACCAAAAGCGTAAATATCGACTTTTTCATCATATTT 60
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 TTCATCAAAAATCTCTGGCGCCATAAAACCCAATGTACCCAACATAGTTTTTCTTCCACT 120
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 ATTACTCACATGAGTTGCCAAACCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTC 180
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 TGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGGAGAATAGGAGGTTG 240
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 GATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAG 300
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 GGGAAATTTAAGGATGCACCTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAG 360
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 TCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCTTTAATTTGATTGTCCG 420
consensus_8632#1 -------------------------AATGACAACTCCTTTTTCTTCAATTTGATTGTTCG 35
******************** *********** **
consensus_8632#0 GATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGAT 480
consensus_8632#1 GATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGAT 95
************************************************************
consensus_8632#0 TCATTTTAAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAA 540
consensus_8632#1 TCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAA 155
******* ****************************************************
consensus_8632#0 CATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCAC 600
consensus_8632#1 CATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCAC 215
************************************************************
consensus_8632#0 GGTAAACAAATTTATAACCACCCTCACCAATCTTGAGATTATGTTTTATCTAGCGACTAC 660
consensus_8632#1 GGTAAACAAATTTATAACCACCCTCACCAATA--GGGACTG----------AGAATATAT 263
******************************* * ** * ** **
consensus_8632#0 ATTTCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCA 720
consensus_8632#1 GATCCAATACAAGTAATGCCTTTGGTCCGATCGTTAA----------------------- 300
* * ** * ** * *** ** * *
consensus_8632#0 TTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTTCTTTTGTTTTCTTGCGGT 780
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 CAGCGGAAGTTGCAGAAGCTTGCTGGTCGTTTGGCTGACCGCAATTCACAACACCAATTG 840
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 ATTCCCCAATGACAGGAACCCCAGCAATATTTGGNTGTGATAATAAATCTTCATCATCTG 900
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 AGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTTTTTTTGTAGTTGACCGAG 960
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 AGCCACTATCCCTTCGAAAAGCTGACCGGTTCAACAAATCAGTATCTTCTGTCTTATGAA 1020
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 CGGACGTATCCGTAGCATTACCATCAGCACCAGAGAAAGATTCAGTAGCCTGCTCATTCT 1080
consensus_8632#1 ------------------------------------------------------------
consensus_8632#0 TCGAAACCTGCTGGTGTATTGATGCGTTCATTTATCAAGGGACTGAGAATATATATTCAA 1140
consensus_8632#1 ------------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||