cluster # 8632

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Schistosoma mansoni
cluster # 8632 cluster # 8632 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8632#0 length = 1140 sequences # 6

consensus_8632#1 length = 300 sequences # 1

consensusID : consensus_8632#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1140
fasta sequence

                              [TGTCATCACTTCTAACATTAACATACCAAAAGCGTAAATATCGACTTTTTCATCATATTTTTCATCAAAAATCTCTGGCGCCATAAAACCCAATGTACCCAACATAGTTTTTCTTCC-ACTATTACTCACATGA-GTTGCCAAA-CCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTCTGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGGAGAATAGGAGGTTGGATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAGGGGAAATTTAAGGATGCACCTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCTTTAATTTGATTGTCCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTAAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATCTTGAGATTATGTTTTATCTAGCGACTACATTTCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCATTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTTCTTTTGTTTTCTTGCGGTCAGCGG-AAGTTGCAGAAGCTTGCTGGTCGTTTGGCTGACCGCAATTCACAACACCAATTGATTCCCCAATGACAGGAACCCCAGCAATATTTGGNTGTGATAATAAATCTTCATCATCTGAGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTTTTTTTGTAGTTGACCGAGAGCCACTATCCCTTCGAAAAGCTGACCGGTTCAACAAATCAGTATCTTCTGTCTTATGAACGGACGTATCCGTAGCATTACCATCAGCACCAGAGAAAGATTCAGTAGCCTGCTCATTCTTCGAAACCTGCTGGTGTATTGATGCGTTCATTTATCAAGGGACTGAGAATATATATTCAA]

[+] EMBL CD068985             [TGTCATCACTTCTAACATTAACATACCAAAAGCGTAAATATCGACTTTTTCATCATATTTTTCATCAAAAATCTCTGGCGCCATAAAACCCAATGTACCCAACATAGTTTTTCTTCC ACTATTACTCACATGA GTTGCCAAA CCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTCTGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGGAGAATAGGAGGTTGGATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAGGGGAAATTTAAGGATGCACCTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACGACTCCTTTTTCTTTAATTTGATTGTCCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD060449             [                                                                                                           tgTTTCTTCCGACTATTACTCACATGAGGTTGCCAAAGCCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTCTGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGAAGAATAGGAGGTTGGATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAGGGGAAATTTAAGGATGCA CTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD201631             [                                                                                                                                                                                                                                                                                                                                                             ttCGC TTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCTTCAATTTGATTGTTCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATCTTGAGATTATGTTTTATCTAGCGACTACATTTCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCATTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTT                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD070384             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCATTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTTCTTTTGTTTTCTTGCGGTCAGCGG AAGTTGCAGAAGCTTGCTGGTCGTTTGGCTGACCGCAATTCACAACACCAATTGATTCCCCAATGACAGGAACCCCAGCAATATTTGGNTGTGATAATAAATCTTCATCATCTGAGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTT                                                                                                                                                                                                      ]
[-] EMBL CD070466             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCGGNAAGTTGCAGAAGCTTGCTGGTCG TTGGCTGACCGCAATTCACAACACCAATTGATTCCNCAATGTCAGGAACCCCAGCAATATTTGGTTGTGATAATAAATCTTCATCATCTGAGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTTTTTTTGTAGTTGACCGAGAGCCACTATCCCTTCGAAAAGCTGACCGGTTCAACAAATCAGTATCTTCTGTCTTATGAACGGACGTATCCGTAGCATTACCATCAGCACCAGAGAAAGATTCAGTAGCCTGCTCATTCT                                                            ]
[-] EMBL CD150663             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGTATCCGTAGCATTACCATCAGCTCCAGAGAAAGATTCAGTAGCCTGCTCATTCTTCGAAACCTGCTGGTGTATTGATGCGTTCATTTATCAAGGGACTGAGAATATATATTCAA]




>consensus_8632#0
TGTCATCACTTCTAACATTAACATACCAAAAGCGTAAATATCGACTTTTTCATCATATTT
TTCATCAAAAATCTCTGGCGCCATAAAACCCAATGTACCCAACATAGTTTTTCTTCCACT
ATTACTCACATGAGTTGCCAAACCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTC
TGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGGAGAATAGGAGGTTG
GATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAG
GGGAAATTTAAGGATGCACCTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAG
TCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCTTTAATTTGATTGTCCG
GATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGAT
TCATTTTAAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAA
CATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCAC
GGTAAACAAATTTATAACCACCCTCACCAATCTTGAGATTATGTTTTATCTAGCGACTAC
ATTTCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCA
TTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTTCTTTTGTTTTCTTGCGGT
CAGCGGAAGTTGCAGAAGCTTGCTGGTCGTTTGGCTGACCGCAATTCACAACACCAATTG
ATTCCCCAATGACAGGAACCCCAGCAATATTTGGNTGTGATAATAAATCTTCATCATCTG
AGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTTTTTTTGTAGTTGACCGAG
AGCCACTATCCCTTCGAAAAGCTGACCGGTTCAACAAATCAGTATCTTCTGTCTTATGAA
CGGACGTATCCGTAGCATTACCATCAGCACCAGAGAAAGATTCAGTAGCCTGCTCATTCT
TCGAAACCTGCTGGTGTATTGATGCGTTCATTTATCAAGGGACTGAGAATATATATTCAA

consensusID : consensus_8632#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [AATGACAACTCCTTTTTCTTCAATTTGATTGTTCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATAGGGACTGAGAATATATGATCCAATACAAGTAATGCCTTTGGTCCGATCGTTAA]

[+] EMBL CD159936             [AATGACAACTCCTTTTTCTTCAATTTGATTGTTCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATAGGGACTGAGAATATATGATCCAATACAAGTAATGCCTTTGGTCCGATCGTTAA]




>consensus_8632#1
AATGACAACTCCTTTTTCTTCAATTTGATTGTTCGGATCTTCCATATCAATCCACTCTCT
GAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTCAACATAATCTCCGTCTC
TCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCA
TGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTC
ACCAATAGGGACTGAGAATATATGATCCAATACAAGTAATGCCTTTGGTCCGATCGTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8632#0      TGTCATCACTTCTAACATTAACATACCAAAAGCGTAAATATCGACTTTTTCATCATATTT 60
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      TTCATCAAAAATCTCTGGCGCCATAAAACCCAATGTACCCAACATAGTTTTTCTTCCACT 120
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      ATTACTCACATGAGTTGCCAAACCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTC 180
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      TGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGGAGAATAGGAGGTTG 240
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      GATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAG 300
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      GGGAAATTTAAGGATGCACCTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAG 360
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      TCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCTTTAATTTGATTGTCCG 420
consensus_8632#1      -------------------------AATGACAACTCCTTTTTCTTCAATTTGATTGTTCG 35
                                               ******************** *********** **

consensus_8632#0      GATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGAT 480
consensus_8632#1      GATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGAT 95
                      ************************************************************

consensus_8632#0      TCATTTTAAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAA 540
consensus_8632#1      TCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAA 155
                      ******* ****************************************************

consensus_8632#0      CATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCAC 600
consensus_8632#1      CATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCAC 215
                      ************************************************************

consensus_8632#0      GGTAAACAAATTTATAACCACCCTCACCAATCTTGAGATTATGTTTTATCTAGCGACTAC 660
consensus_8632#1      GGTAAACAAATTTATAACCACCCTCACCAATA--GGGACTG----------AGAATATAT 263
                      *******************************   * ** *           **    ** 

consensus_8632#0      ATTTCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCA 720
consensus_8632#1      GATCCAATACAAGTAATGCCTTTGGTCCGATCGTTAA----------------------- 300
                        * * **     * ** * *** **  *     *                         

consensus_8632#0      TTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTTCTTTTGTTTTCTTGCGGT 780
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      CAGCGGAAGTTGCAGAAGCTTGCTGGTCGTTTGGCTGACCGCAATTCACAACACCAATTG 840
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      ATTCCCCAATGACAGGAACCCCAGCAATATTTGGNTGTGATAATAAATCTTCATCATCTG 900
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      AGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTTTTTTTGTAGTTGACCGAG 960
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      AGCCACTATCCCTTCGAAAAGCTGACCGGTTCAACAAATCAGTATCTTCTGTCTTATGAA 1020
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      CGGACGTATCCGTAGCATTACCATCAGCACCAGAGAAAGATTCAGTAGCCTGCTCATTCT 1080
consensus_8632#1      ------------------------------------------------------------
                                                                                  

consensus_8632#0      TCGAAACCTGCTGGTGTATTGATGCGTTCATTTATCAAGGGACTGAGAATATATATTCAA 1140
consensus_8632#1      ------------------------------------------------------------