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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 834 fasta sequence
[GCCAAGATTCGGCACGAGGACCATTAACTGTAACGATACAGGGAATATGGCTGGAAGTAGGTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTATCACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAACTGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACC-ACCTAATTTTGTTTG-AGTTCATGATGTAAATTGAAGAAAATGG-AAAATACCACCATT-TTAATATTCTGGGCTAATATCGAACTATATTT-TTTATTAATGCGATTTATGAAT-ATAGAAAAATAATTTTACTTTGGCGAAACATTATATTAAACGGTTACTTTTTTTAACATTAA]
[+] EMBL CD079870 [GCCAAGATTCGGCACGAGGACCATTAACTGTAACGATACAGGGAATATGGCTGGAAGTAGGTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTATCACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAACTGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACC ACCTAATTTTGTTTG AGTTCATGATGTAAATTGAAGAAAATGG AAAATACCACCATT TTAATATTCTGGGCTAATATCGAACTATATTT TTTATTAATGCGATTTATGAAT ATAGAAAAATAATTTTACTTTGGCGAAACATTATATTAAACGGTTACTTTTTTTAACATTAA]
[+] EMBL CD131448 [ CTGGAAGTAGGTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACANAAGAAATGT ]
[-] EMBL CD060511 [ TTTTCGTACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAG ]
[-] EMBL CD068667 [ GACACTATAAACTATTCTTAGTAGCATACCTGATGAGATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTATCACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAACTGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACCAACCTAATTTTGTTTGTAGTTCATGATGTAAATTGAAGAAAATGGAAAAATACAACCATTGTTAATATTCTGTGCTTATATCGAACTATATTTCTTTATTAATGTGATTTATGAATAATAGAAAAATtagtctttt ]
consensusID : consensus_8638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 521 fasta sequence
[CCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTAAGTTTGAATTAAGATACAAAGTCGTGCATATATTAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGGCCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACANAAGAAATGTCTCGAAGATCN]
[+] EMBL CD131396 [CCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTAAGTTTGAATTAAGATACAAAGTCGTGCATATATTAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGGCCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACANAAGAAATGTCTCGAAGATCN]
[+] EMBL CD131897 [ TGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATGCTAGAGTTCTGGAGTTG ]
[-] EMBL CD125504 [ ATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8638#0 GCCAAGATTCGGCACGAGGACCATTAACTGTAACGATACAGGGAATATGGCTGGAAGTAG 60
consensus_8638#1 ------------------------------------------------------------
consensus_8638#0 GTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGT 120
consensus_8638#1 ----CCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGT 56
********************************************************
consensus_8638#0 TATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACT 180
consensus_8638#1 TATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACT 116
************************************************************
consensus_8638#0 AAAGGAAGCTTTCTATAAGGT--------------------------------------- 201
consensus_8638#1 AAAGGAAGCTTTCTATAAGGTAAGTTTGAATTAAGATACAAAGTCGTGCATATATTAGGT 176
*********************
consensus_8638#0 TGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGG 261
consensus_8638#1 TGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGG 236
************************************************************
consensus_8638#0 AGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATG 321
consensus_8638#1 AGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATG 296
************************************************************
consensus_8638#0 TGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGAC 381
consensus_8638#1 TGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGAC 356
************************************************************
consensus_8638#0 ACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGA 441
consensus_8638#1 ACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGGCCGCAGAGCATTTATAGA 416
***************************************** ******************
consensus_8638#0 AGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTA 501
consensus_8638#1 AGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTA 476
************************************************************
consensus_8638#0 TGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTAT 561
consensus_8638#1 TGACACGTTACCACCGGGAACACANAAGAAATGTCTCGAAGATCN--------------- 521
************************ *******************
consensus_8638#0 CACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAAC 621
consensus_8638#1 ------------------------------------------------------------
consensus_8638#0 TGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACCACCTAATTTTGTTTGAGTTC 681
consensus_8638#1 ------------------------------------------------------------
consensus_8638#0 ATGATGTAAATTGAAGAAAATGGAAAATACCACCATTTTAATATTCTGGGCTAATATCGA 741
consensus_8638#1 ------------------------------------------------------------
consensus_8638#0 ACTATATTTTTTATTAATGCGATTTATGAATATAGAAAAATAATTTTACTTTGGCGAAAC 801
consensus_8638#1 ------------------------------------------------------------
consensus_8638#0 ATTATATTAAACGGTTACTTTTTTTAACATTAA 834
consensus_8638#1 ---------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||