cluster # 8643

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Schistosoma mansoni
cluster # 8643 cluster # 8643 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8643#0 length = 566 sequences # 5

consensus_8643#1 length = 470 sequences # 1
consensus_8643#2 length = 443 sequences # 1

consensusID : consensus_8643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 566
fasta sequence

                              [TCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAGACGTTCGTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAA-CGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATACGTGACGCTCTTGATGATGC]

[+] EMBL CD113194             [TCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAGACGTTCGTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAA CGTGATGCTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGTTGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGATGATGCATCACCA                                                                    ]
[+] EMBL CD113217             [TCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAGACGTTCGTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAA CGTGATGTTCGACGTACACTTGATAGTGAGCACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACC                                                                     ]
[+] EMBL CD113238             [TCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGGGTTACTTAGACGTTCGTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAA CGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGACTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACC                                                                     ]
[+] EMBL CD060613             [                                                                                                                                                                                                                                                  TTTGACTTCGTCACCAACGGAAGCGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTACGTGACAAGACAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAACACGATCATTAGACTTAACTATAGCAACCCTAAAGAAACGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATACGTGACGCTCTTGATGATGC]
[+] EMBL CD170021             [                                                                                                                                                                                                                                                                                               gttgntAAAAC CAAA TACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTT                                        ]




>consensus_8643#0
TCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAAT
TCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTG
ATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAGACGTTCGTGTAATAAACT
CACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGT
GGTTTGACTTCGTCAACAACGGAACGTGATGTTCGACGTACACTTGATAGTGAACACGCA
AATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTT
GATTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAG
ATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAA
TTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGT
GATATACGTGACGCTCTTGATGATGC

consensusID : consensus_8643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [CACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAAACGTTCGTGTAATCAAGGATAAAACAACGGGTATGTATTTATTGCCTTCCCCGCTTCAGGAAATTATTGGGATATAATAGTTGCTTGTTAATTATAAACTTGCTTTCATCTTTACGTTACTAATAATTGATTAAATTATTCGTATTCCCGAGTGGAAATTAATATTCTGAGGATACGTCTTTTTCTGGATTGTCTGTGTATCGTTATATGCAACAACTTTTTTAACTGTCATCAACTCATTGAACTTCCTAACGGTACTTTACAAGTTCTTCATTATATCTAGTCCTCTAAAAATCCCTATTGTATGAACGTATGTCTGACCACTAGATTGATTTTCTTAGTATCTTGTTTGATCTCCATTCTTATAGTAGTTCTAGCTATTGGTCTTAGCTAATCATAACTCTGCTT]

[+] EMBL CD190045             [CACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAAACGTTCGTGTAATCAAGGATAAAACAACGGGTATGTATTTATTGCCTTCCCCGCTTCAGGAAATTATTGGGATATAATAGTTGCTTGTTAATTATAAACTTGCTTTCATCTTTACGTTACTAATAATTGATTAAATTATTCGTATTCCCGAGTGGAAATTAATATTCTGAGGATACGTCTTTTTCTGGATTGTCTGTGTATCGTTATATGCAACAACTTTTTTAACTGTCATCAACTCATTGAACTTCCTAACGGTACTTTACAAGTTCTTCATTATATCTAGTCCTCTAAAAATCCCTATTGTATGAACGTATGTCTGACCACTAGATTGATTTTCTTAGTATCTTGTTTGATCTCCATTCTTATAGTAGTTCTAGCTATTGGTCTTAGCTAATCATAACTCTGCTT]




>consensus_8643#1
CACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTT
AAACGTTCGTGTAATCAAGGATAAAACAACGGGTATGTATTTATTGCCTTCCCCGCTTCA
GGAAATTATTGGGATATAATAGTTGCTTGTTAATTATAAACTTGCTTTCATCTTTACGTT
ACTAATAATTGATTAAATTATTCGTATTCCCGAGTGGAAATTAATATTCTGAGGATACGT
CTTTTTCTGGATTGTCTGTGTATCGTTATATGCAACAACTTTTTTAACTGTCATCAACTC
ATTGAACTTCCTAACGGTACTTTACAAGTTCTTCATTATATCTAGTCCTCTAAAAATCCC
TATTGTATGAACGTATGTCTGACCACTAGATTGATTTTCTTAGTATCTTGTTTGATCTCC
ATTCTTATAGTAGTTCTAGCTATTGGTCTTAGCTAATCATAACTCTGCTT

consensusID : consensus_8643#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [CGGTTAGTGAAAACCGCTTCAGTTTAGTCTTGTGAAGTACAGACCTGTTGTTCTGCCAAAACAGTTGGTGATGCTCCTATACCTTACTGGTTAACTTCTTCCAGTACCCCGATTTTCGTATTCAGCAATCAAGTTCTTCAAATTTTCGAACATTGACGCTGAAAAATTGATACTACTCATAAGATCTCAACCTGTTCTCCTTACTGCACAAAAGCCCTTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAACGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTA]

[+] EMBL CD133083             [CGGTTAGTGAAAACCGCTTCAGTTTAGTCTTGTGAAGTACAGACCTGTTGTTCTGCCAAAACAGTTGGTGATGCTCCTATACCTTACTGGTTAACTTCTTCCAGTACCCCGATTTTCGTATTCAGCAATCAAGTTCTTCAAATTTTCGAACATTGACGCTGAAAAATTGATACTACTCATAAGATCTCAACCTGTTCTCCTTACTGCACAAAAGCCCTTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAACGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTA]




>consensus_8643#2
CGGTTAGTGAAAACCGCTTCAGTTTAGTCTTGTGAAGTACAGACCTGTTGTTCTGCCAAA
ACAGTTGGTGATGCTCCTATACCTTACTGGTTAACTTCTTCCAGTACCCCGATTTTCGTA
TTCAGCAATCAAGTTCTTCAAATTTTCGAACATTGACGCTGAAAAATTGATACTACTCAT
AAGATCTCAACCTGTTCTCCTTACTGCACAAAAGCCCTTGTAATAAACTCACTTCCTTGT
TTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTC
GTCAACAACGGAACGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGA
CGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATC
AGCAAATGATGCTAAACAGTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8643#0      ---------------------------------------------------TCCGAAAAA 9
consensus_8643#2      CGGTTAGTGAAAACCGCTTCAGTTTAGTCTTGTGAAGTACAGACCTGTTGTTCTGCCAAA 60
consensus_8643#1      -------------------------------------CACTTCCCTTGATCATCGTGATA 23
                                                                            *  * *

consensus_8643#0      CGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATG 69
consensus_8643#2      --ACAGTTGGTGATGCTCCTA--TACCTTACTGGTTAACTTCTTCCAGTACCCCGATTTT 116
consensus_8643#1      TTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAAACGTTCGTGTAATCAAGGATA 83
                                   *     *     *   *             *   * *  *     * 

consensus_8643#0      CATCACCAACTATTATGCTGCGTGGGATTCC---CACTTCCCTTGATCA--TCGTGATAT 124
consensus_8643#2      CGTATTCAGCAATCAAGTTCTTCAAATTTTCGAACATTGACGCTGAAAAATTGATACTAC 176
consensus_8643#1      AAACAACGGGTAT-GTATTTATTGCCTTCCC---CGCTTCAGGAAATTATTGGGATATAA 139
                            *    **     *        *  *   *  *       *  *        ** 

consensus_8643#0      TCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAGACGTTCGTGTAATAAACTCACT 184
consensus_8643#2      TCATAA-GATCTCAACC-TGTTCTCCTTA-CTGCACAAAAGCCCTTGTAATAAACTCACT 233
consensus_8643#1      TAGTTG-CTTGTTAATTATAAACTTGCTTTCATCTTTACGTTACTAATAATTGATTAAAT 198
                      *  *     * *  *   *   *          *         *   ****  * * * *

consensus_8643#0      TCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTT 244
consensus_8643#2      TCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTT 293
consensus_8643#1      TATTCGTATTCCCGAGT--GGAAATTAATATTCTGAGGATACGTCTTTTTCTGGATTGTC 256
                      *  * ** **    * *   *****  **** *  *    *    ** * ***  * ** 

consensus_8643#0      TGACT-TCGTCAACAACGGAACGTGATGTTCGACGTACACTTGAT-AGTGAACACGCAAA 302
consensus_8643#2      TGACT-TCGTCAACAACGGAACGTGATGTTCGACGTACACTTGAT-AGTGAACACGCAAA 351
consensus_8643#1      TGTGTATCGTTA--TATGCAACAACTTTTTTAACTGTCATCAACTCATTGAACTTCCTAA 314
                      **  * **** *   * * ***    * **  **   **     * * *****   * **

consensus_8643#0      TTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGA 362
consensus_8643#2      TTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGA 411
consensus_8643#1      CGGTACT---TTACAAGTTCTTCATTATATCTAGTCCTCTAAA-AATCCCTATTGTATGA 370
                          ***    ***   ** *** * * *   *  *   ** *        ***   ***

consensus_8643#0      TTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGAT 422
consensus_8643#2      TTTTGTATCAGCAAATGATGCTAAACAGTTTA---------------------------- 443
consensus_8643#1      ACGTATGTCTGACCACTAGATTGATTTTCTTAG--TATCTTGTTTGATCTCCATTCTTAT 428
                         * * ** *   *  *   * *     ***                            

consensus_8643#0      CCGAAAAACGATAATTAGACTTAACTA-TAGCAACCCTAAAGAAAAGCGTGATGATGAAT 481
consensus_8643#2      ------------------------------------------------------------
consensus_8643#1      AGTAGTTCTAGCTATTGGTCTTAGCTAATCATAACTCTGCTT------------------ 470
                                                                                  

consensus_8643#0      TCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTG 541
consensus_8643#2      ------------------------------------------------------------
consensus_8643#1      ------------------------------------------------------------
                                                                                  

consensus_8643#0      ATATACGTGACGCTCTTGATGATGC 566
consensus_8643#2      -------------------------
consensus_8643#1      -------------------------