cluster # 8645

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Schistosoma mansoni
cluster # 8645 cluster # 8645 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8645#0 length = 810 sequences # 2

consensus_8645#1 length = 600 sequences # 5

consensusID : consensus_8645#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 810
fasta sequence

                              [CCAAGACGTTCAGAAAAAACATCTATTCATGAATTGATTAGTTCAGTGGATCATTCAAAAAATTTGAAGGAATTACGTAATTTAGCTAAATATCTATTAGATCAATATCATATTGTTACATCTGAACTAGAGCTTCAGTCGGATACTAATTGGTGTTTAAGACAGAGATTAACAAATGCAAACAGTCAATTAAATCGATTAACAGGTTTGCTCAATAAAGGCAGTCAAGGATTATCATCGATTGAAGAAGATTTAAGCTTAGGAACAGACAAGACTTCATTACGTTCAGAACATTATGATGGAATACGTCAAAGATCTCTTCAACCAACC---TATAATCTTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAGATGAACATTTAGTTAGATCTAGTTATTCATCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAATCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAAACACACCTAATGGCATCCTC]

[-] EMBL CD067006             [CCAAGACGTTCAGAAAAAACATCTATTCATGAATTGATTAGTTCAGTGGATCATTCAAAAAATTTGAAGGAATTACGTAATTTAGCTAAATATCTATTAGATCAATATCATATTGTTACATCTGAACTAGAGCTTCAGTCGGATACTAATTGGTGTTTAAGACAGAGATTAACAAATGCAAACAGTCAATTAAATCGATTAACAGGTTTGCTCAATAAAGGCAGTCAAGGATTATCATCGATTGAAGAAGATTTAAGCTTAGGAACAGACAAGACTTCATTACGTTCAGAACATTATGATGGAATACGTCAAAGATCTCTTCAACCAACC   TATAATCTTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAGATGAACATTTAGTTAGATCTAGTTATTCATCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAATCTGACGTATCATCAATGACATCAAG                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD117359             [                                                                                                                                                                      GATTAACAAATGCAAACAGTCAATTAAATCGACTAACAGGCTTGCTCAATAAAGGCGGTCAAGGATTATCATCGATTGAAGAAGATTTAAGCTTAGGAACAGACAAAACTTCATTACGTTTAGAACATTATGATGGAATACGTCAAAGATCTCTTCAACCCACCTATTATAATCTTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAAACACACCTAATGGCATCCTC]




>consensus_8645#0
CCAAGACGTTCAGAAAAAACATCTATTCATGAATTGATTAGTTCAGTGGATCATTCAAAA
AATTTGAAGGAATTACGTAATTTAGCTAAATATCTATTAGATCAATATCATATTGTTACA
TCTGAACTAGAGCTTCAGTCGGATACTAATTGGTGTTTAAGACAGAGATTAACAAATGCA
AACAGTCAATTAAATCGATTAACAGGTTTGCTCAATAAAGGCAGTCAAGGATTATCATCG
ATTGAAGAAGATTTAAGCTTAGGAACAGACAAGACTTCATTACGTTCAGAACATTATGAT
GGAATACGTCAAAGATCTCTTCAACCAACCTATAATCTTAATACTTTACAAGAAAAGCAT
ACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAGATGAACATTTAGTTAGATCT
AGTTATTCATCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAA
TCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGA
ATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAA
CTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATT
CATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCT
ACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACA
CCGACGCCAAACACACCTAATGGCATCCTC

consensusID : consensus_8645#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 600
fasta sequence

                              [TTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACAT-AAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACAACACCGACAGCAACAGCACCGACAACAACCCTAACAGATTCATCTAAACAATTAGATAACAATAATAATCCAAATATTATTATCTCTCATTGGAATGAATTAGAAGAAGGA-CAACAAAAATTAC]

[-] EMBL CD125537             [TTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACAT AAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACA                                                                                                                             ]
[-] EMBL CD125546             [TTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACAT AAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACA                                                                                                                             ]
[-] EMBL CD169826             [                            CAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACAACACCGACAGCAACAGCACCGACAACAACCCTAACAGATTCATCTAAACAATTAGATAACAATAATAATCCAAATATTATTATCTCTCATTGGAATGAATTAGAAGAAGGA CAACAAAAATTAC]
[-] EMBL CD097034             [                                                                                                                           TATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACAT AAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACAACACCGACAGCAACAGCACCGACAACAACCCTAACAGATTCATCTAAACAATTAGATAACAATAATAATCCAAATATTATTATCTCTCATTGGAATGAATTAGAAGAAGGATCAAC         ]
[+] EMBL CD186582             [                                                                                                                                                                          ATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACAT AAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACAACACCGACAGCAACAGCACCGACAACAAC                                                                                                ]




>consensus_8645#1
TTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTT
CAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAAT
CAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATC
CTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCAT
CACAAACAGTAAAACATAAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTC
CAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTG
ATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTA
GAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACAACAC
CGACAGCAACAGCACCGACAACAACCCTAACAGATTCATCTAAACAATTAGATAACAATA
ATAATCCAAATATTATTATCTCTCATTGGAATGAATTAGAAGAAGGACAACAAAAATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8645#0      CCAAGACGTTCAGAAAAAACATCTATTCATGAATTGATTAGTTCAGTGGATCATTCAAAA 60
consensus_8645#1      ------------------------------------------------------------
                                                                                  

consensus_8645#0      AATTTGAAGGAATTACGTAATTTAGCTAAATATCTATTAGATCAATATCATATTGTTACA 120
consensus_8645#1      ------------------------------------------------------------
                                                                                  

consensus_8645#0      TCTGAACTAGAGCTTCAGTCGGATACTAATTGGTGTTTAAGACAGAGATTAACAAATGCA 180
consensus_8645#1      ------------------------------------------------------------
                                                                                  

consensus_8645#0      AACAGTCAATTAAATCGATTAACAGGTTTGCTCAATAAAGGCAGTCAAGGATTATCATCG 240
consensus_8645#1      ------------------------------------------------------------
                                                                                  

consensus_8645#0      ATTGAAGAAGATTTAAGCTTAGGAACAGACAAGACTTCATTACGTTCAGAACATTATGAT 300
consensus_8645#1      ------------------------------------------------------------
                                                                                  

consensus_8645#0      GGAATACGTCAAAGATCTCTTCAACCAACCTATAATCTTAATACTTTACAAGAAAAGCAT 360
consensus_8645#1      -------------------------------------TTAATACTTTACAAGAAAAGCAT 23
                                                           ***********************

consensus_8645#0      ACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAGATGAACATTTAGTTAGATCT 420
consensus_8645#1      ACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCT 83
                      *************************************** ********************

consensus_8645#0      AGTTATTCATCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAA 480
consensus_8645#1      AGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAG 143
                      ******** ************************************************** 

consensus_8645#0      TCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGA 540
consensus_8645#1      TCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGA 203
                      ************************************************************

consensus_8645#0      ATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAA 600
consensus_8645#1      ATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAA 263
                      ************************************************************

consensus_8645#0      CTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATT 660
consensus_8645#1      CTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATT 323
                      ************************************************************

consensus_8645#0      CATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCT 720
consensus_8645#1      CATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCT 383
                      ************************************************************

consensus_8645#0      ACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACA 780
consensus_8645#1      ACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACA 443
                      ************************************************************

consensus_8645#0      CCGACGCCAAACACACCTAA--TGGCATCCTC---------------------------- 810
consensus_8645#1      CCGACGCCAACAACACCCACACCGACATCAACAACACCGACAGCAACAGCACCGACAACA 503
                      **********  ***** *    * ****  *                            

consensus_8645#0      ------------------------------------------------------------
consensus_8645#1      ACCCTAACAGATTCATCTAAACAATTAGATAACAATAATAATCCAAATATTATTATCTCT 563
                                                                                  

consensus_8645#0      -------------------------------------
consensus_8645#1      CATTGGAATGAATTAGAAGAAGGACAACAAAAATTAC 600