cluster # 8646

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8646 cluster # 8646 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8646#0 length = 473 sequences # 6

consensus_8646#1 length = 89 sequences # 1

consensusID : consensus_8646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 473
fasta sequence

                              [ACCGTCTAGTTATGAATCTGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTCGGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAG-AAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACACATACCTCTGATAGACGGTATTCCTGTTCAGTACAAGGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGCACAACACAAAATTATTCATGGTCAAGGTCGTCGTTTTTCTTGTGATTATTGTGAATACAGCGCGACCACATCTTCTAAATCTCGTCGGCATGCTCGTATACACGCTGGGGCTA]

[+] EMBL CD119423             [ACCGTCTAGTTATGAATCTGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTCGGAGCCAAGGTTCTGCTGTGATTTATGTCGAAAGAAATTCATTACTGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAG AAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACAC                                                                                                                                                                                          ]
[+] EMBL CD119531             [                 CTGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCCAATCGTAATTCGGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAG AAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACAC                                                                                                                                                                                          ]
[-] EMBL CD119339             [                  TGAAGATCAANCCGATAGACCAATATGCCAGCGCTGTTCANAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTCAGAGCCAAGGTTCTGTTGTGAGATATGTCGAAAGAAATACAGAACTGATGTTCAGTACGCCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGAATAAAG AAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGCCAACACATACCTCTGATAGACGGg                                                                                                                                                                        ]
[-] EMBL CD119455             [                  TGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTCGGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGNNATTCAGAAATGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAG AAAAAAGTCGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACACATACCTCTGATAGACGat                                                                                                                                                                        ]
[-] EMBL CD119322             [                  TGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTCGGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAGCGTACATTTCTGTGTAAAG AAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACCACACA                                                                                                                                                                                         ]
[+] EMBL CD182304             [                                                                                                      CTGTTCTAATCGTAATTCGGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAGAAAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACACATACCTCTGATAGACCTTATTCCTGTTCAGTACAAGGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGCACAACACAAAATTATTCATGGTCAAGGTCGTCGTTTTTCTTGTGATTATTGTGAATACAGCGCGACCACATCTTCTAAATCTCGTCGGCATGCTCGTATACACGCTGGGGCTA]




>consensus_8646#0
ACCGTCTAGTTATGAATCTGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAA
GTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTC
GGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACAC
CCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAGAAAAAAGTTGTGG
TAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACACATACCTCTGATAG
ACGGTATTCCTGTTCAGTACAAGGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGC
ACAACACAAAATTATTCATGGTCAAGGTCGTCGTTTTTCTTGTGATTATTGTGAATACAG
CGCGACCACATCTTCTAAATCTCGTCGGCATGCTCGTATACACGCTGGGGCTA

consensusID : consensus_8646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 89
fasta sequence

                              [GGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGCACAACACAAAATTATTCATGGTCAAGCGTGATGTCACTCGTCTTTTGGGTA]

[+] EMBL CD193783             [GGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGCACAACACAAAATTATTCATGGTCAAGCGTGATGTCACTCGTCTTTTGGGTA]




>consensus_8646#1
GGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGCACAACACAAAATTATTCATGGT
CAAGCGTGATGTCACTCGTCTTTTGGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8646#0      ACCGTCTAGTTATGAATCTGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAA 60
consensus_8646#1      ------------------------------------------------------------
                                                                                  

consensus_8646#0      GTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTC 120
consensus_8646#1      ------------------------------------------------------------
                                                                                  

consensus_8646#0      GGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACAC 180
consensus_8646#1      ------------------------------------------------------------
                                                                                  

consensus_8646#0      CCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAGAAAAAAGTTGTGG 240
consensus_8646#1      ------------------------------------------------------------
                                                                                  

consensus_8646#0      TAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACACATACCTCTGATAG 300
consensus_8646#1      ------------------------------------------------------------
                                                                                  

consensus_8646#0      ACGGTATTCCTGTTCAGTACAAGGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGC 360
consensus_8646#1      ----------------------GGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGC 38
                                            **************************************

consensus_8646#0      ACAACACAAAATTATTCATGGTCAAG---GTCGTCGTTTTTCTTGTGATTATTGTGAATA 417
consensus_8646#1      ACAACACAAAATTATTCATGGTCAAGCGTGATGTCACTCGTCTTTTGGGTA--------- 89
                      **************************   *  ***  *  **** **  **         

consensus_8646#0      CAGCGCGACCACATCTTCTAAATCTCGTCGGCATGCTCGTATACACGCTGGGGCTA 473
consensus_8646#1      --------------------------------------------------------