cluster # 865

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Schistosoma mansoni
cluster # 865 cluster # 865 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_865#0 length = 287 sequences # 1

consensus_865#1 length = 242 sequences # 1

consensusID : consensus_865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [GTTGCGGCAGGAATCGCAAGAGCACAAACCCCGCCGCCAGCGCCAACATCCCTGTTCGCATAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTTATTTACTGTCACAAAGTCTGAATCGGCCGCCCGTAAAATCCGGGCATACTGCCCGCCTGAACTGCCCGAGAAGCCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGACCCGCATCAGGGAACGCAAACACTTACGTTTTTTCGGTCCCCTGCTCCAC]

[+] EMBL CD158720             [GTTGCGGCAGGAATCGCAAGAGCACAAACCCCGCCGCCAGCGCCAACATCCCTGTTCGCATAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTTATTTACTGTCACAAAGTCTGAATCGGCCGCCCGTAAAATCCGGGCATACTGCCCGCCTGAACTGCCCGAGAAGCCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGACCCGCATCAGGGAACGCAAACACTTACGTTTTTTCGGTCCCCTGCTCCAC]




>consensus_865#0
GTTGCGGCAGGAATCGCAAGAGCACAAACCCCGCCGCCAGCGCCAACATCCCTGTTCGCA
TAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTT
ATTTACTGTCACAAAGTCTGAATCGGCCGCCCGTAAAATCCGGGCATACTGCCCGCCTGA
ACTGCCCGAGAAGCCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGACCC
GCATCAGGGAACGCAAACACTTACGTTTTTTCGGTCCCCTGCTCCAC

consensusID : consensus_865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [CATCCCTGTTCGCATAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTTATTTACTGTCACAAAGTTTTAATCGGCCGCCCGTAGAATCCGGGAATACGGACCGCCTAAATATTCGAGAAACCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGAACCGCATCAGGGAGAACAAACACTTACGTATTTTCGGTCGCCCTGCTCCACG]

[-] EMBL CD158841             [CATCCCTGTTCGCATAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTTATTTACTGTCACAAAGTTTTAATCGGCCGCCCGTAGAATCCGGGAATACGGACCGCCTAAATATTCGAGAAACCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGAACCGCATCAGGGAGAACAAACACTTACGTATTTTCGGTCGCCCTGCTCCACG]




>consensus_865#1
CATCCCTGTTCGCATAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTAT
ACGGACGGTGCTTTATTTACTGTCACAAAGTTTTAATCGGCCGCCCGTAGAATCCGGGAA
TACGGACCGCCTAAATATTCGAGAAACCTTATGCCGCGTCGCTTATTCAAACGCTACATG
CCGGACCCGAACCGCATCAGGGAGAACAAACACTTACGTATTTTCGGTCGCCCTGCTCCA
CG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_865#0      GTTGCGGCAGGAATCGCAAGAGCACAAACCCCGCCGCCAGCGCCAACATCCCTGTTCGCA 60
consensus_865#1      ----------------------------------------------CATCCCTGTTCGCA 14
                                                                   **************

consensus_865#0      TAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTT 120
consensus_865#1      TAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTT 74
                     ************************************************************

consensus_865#0      ATTTACTGTCACAAAGTCTGAATCGGCCGCCCGTAAAATCCGGGCATACTGCCCGCCTGA 180
consensus_865#1      ATTTACTGTCACAAAGTTTTAATCGGCCGCCCGTAGAATCCGGGAATACGGACCGCCTAA 134
                     ***************** * *************** ******** **** * ****** *

consensus_865#0      ACTGCCCGAGAAGCCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGACCC 240
consensus_865#1      A-TATTCGAGAAACCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGAACC 193
                     * *   ****** ******************************************** **

consensus_865#0      GCATCAGGGAACGCAAACACTTACGTTTTTTCGGTC-CCCTGCTCCAC- 287
consensus_865#1      GCATCAGGGAGAACAAACACTTACGTATTTTCGGTCGCCCTGCTCCACG 242
                     **********   ************* ********* ***********