cluster # 8650

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Schistosoma mansoni
cluster # 8650 cluster # 8650 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8650#0 length = 1296 sequences # 5

consensus_8650#1 length = 935 sequences # 2

consensusID : consensus_8650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1296
fasta sequence

                              [TGTGTAACACCTGTTGTCAATGCAACTAAAATAACATCAAATGAATTAGAACAAACTGAAACTAATCTGCTAATGAATTCATTTGAATCCTATAATGATAATAATGATGACACTATTAATTCTAATTGCTTCACATCATCAGATGATGAAATTAGTCGAATTGCTGAAATTCTTGGTTATGCTATTGATAACAATGAACAATTGTTGTCACCTTCATTATATGATTTTCCTACGACAGTAACAGATGACAGTCAACTGTATGACTATGATAATTGTGATATTGATGGAACTGATATCTATTATGATTATGAACAGTCGTTCAGTCCATCTCAGCAATTGAATTGGTTATTAACACCGAGTTATAATTTTACACAACATTTAAACATACCAGAAACCAATTCTTATGAATTATGCGAAAATATCAATTCCAACAATTCATCTCGATATATTCATGGATTTAAAACTATTGAAGCACCTTCTGAACGTTGTCAATCAACTGATTCGTTACTTGGTAAAACTGATACATCTACTCCTACTACTAGTAGCACCAATACTGTCTTG-AATTCTTCCTATAATTCACGCTTTTCTTCTTTAAAAGAATCGTATTCATCTTTACCGAATATAAATGTCTTAGTTGATAATGATAATAATAATAGTAATAACCTTACTATGATTGATGTCAGCAAATCTACATGTAATAGTGATGAGACAACTGTTATTATTGGCCACAATGATGATGATGACGATGATTGTAACTCGAACAGGCACGATTCCAATTCACCTATTATTCCTTTATTGAATACTACTATTACAAATCTTCCTATATTATCCGGTGATAATACTGTCATGAAGTTATTGAAGAATTCAACTATTAACTTCATGAATAACTTTCAATCCACAATAATTCCATCTTGTTCATATTCATTTTATATAACTATGCAAATTAAATTATTATTGAATAATCCATTTCATTCGAATGAACATGCATCTAATCTAATACCAACTGATAATACTGTTGTGATGCCTAGAAAACCATTATATACAAACAAGAGTTTTGAATCACCACTGAATCAACATTGTCTTCCACAAATTACTAAAACTCATTCCAATAATTTAAATAACAATGAATATCATATTACAGAAAAGTTATTGAATCATACTAGACGATACAATAGACAAACAGAATTCAACTTCAATTGTAATGATAATAATGATTTGGGACAAATGTGTTTATCGAATACTACCATTGATAGATCTTCATCACATTCTCTTCAGCCGTTATCATCATCATCATCA]

[+] EMBL AW017286             [TGTGTAACACCTGTTGTCAATGCAACTAAAATAACATCAAATGAATTAGAACAAACTGAAACTAATCTGCTAATGAATTCATTTGAATCCTATAATGATAATAATGATGACACTATTAATTCTAATTGCTTCACATCATCAGATGATGAAATTAGTCGAATTGCTGAAATTCTTGGTTATGCTATTGATAACAATGAACAATTGTTGTCACCTTCATTATATGATTTTCCTACGACAGTAACAGATGACAGTCAACTGTATGACTATGATAATTGTGATATTGATGGAACTGATATCTATTATGATTATGAACAGTCGTTCAGTCCATCTCAGCAATTGAATTGGTTATTAACACCGAGTTATAATTTTACACAACATTTAAACATACCAGAAACCAATTCTTATGAATTATGCGAAAATATCAATTCCAACAATTCATCTCGATATATTCATGGATTTAAAACTATTGAAGCACCTTCTGAACGTTGTCAATCAACTGATTCGTTACTTGGTAAAACTGATACATCTACTCCTACTACTAGTAGCACCAATACTGTCTTG AATTCTTCCTATAATTCACGCTTTTCTTCTTTAAAAGAATCGTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD191212             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tgtTACTAGTAGCACCAATACTGTCTTG AATTCTTCCTATAATTCACGCTTTTCTTCTTTAAAAGAATCGTATTCATCTTTACCGAATATAAATGTCTTAGTTGATAATGATAATAATAATAGTAATAACCTTACTATGATTGATGTCAGCAAATCTACATGTAATAGTGATGAGACAACTGTTATTATTGGCCACAATGATGATGATGACGATGATTGTAACTCGAACAGGCACGATTCCAATTCACCTATTATTCCTTTATTGAATACTACTATTACAAATCTTCCTATATTATCCGGTGATAATACTGTCATGAAGTTATTGAACAATTCAACTATTAACTTCATGAATAACTTTCAATCCACAATAATTCCATCTTGTTCATATTCATTTTATATAACTATGCAAATTAAATTACTATTGAATAATCCATTTCATTCGAATGAACATGCCTCTAATCTAATACCAACTGATAATACT                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD191337             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TACTGTCTTGCACTTCTTCCTATAATTCACGCTTTTCTTCTTTAAAAGAATCGTATTCATCTTTACCGAATATAAATGTCTTAGTTGATAATGATAATAATAATAGTAATAACCTTACTATGATTGATGTCAGCAAATCTACATGTAATAGTGATGAGACAACTGTTATTATTGGCCACAATGATGATGATGACGATGATTGTAACTCGAACAGGCACGATTCCAATTCACCTATTATTCCTTTATTGAATACTACTATTACAAATCTTCCTATATTATCCGGTGATAATACTGTCATGAAGTTATTGAAGAATTCAACTATTAACTTCATGAATAACTTTCAATCCACAAT                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD186394             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTTTTCTTCTTTAAAAGAATCGTATTCATCTTTACCGAATATAAATGTCTTAGTTGATAATGATAATAATAATAGTAATAACCTTACTATGATTGATGTCAGCAAATCTACATGTAATAGTGATGAGACAACTGTTATTATTGGCCACAATGATGATGATGACGATGATTGTAACTCGAACAGGCACGATTCCAATTCACCTATTATTCCTTTATTGAATACTACTATTACAAATCTTCCTATATTATCCGGTGATAATACTGTCATGAAGTTATTGAAGAATTCAACTATTAACTTCATGAATAACTTTCAATCCACAATAATTCCATCTTGTTCATATTCATTTTATATAACTATGCAAATTAAATTATTATTGAATAATCCATTTCATCCGAATGAACATGCATCTAATCTAATACCAACTGATAATACTGTTGTGATGCCTAGAAAACCATTATATACAAACAAGAGT                                                                                                                                                                                                                                                   ]
[-] EMBL CD178914             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTCAACTATTAACTTCATGAATAACTTCCAATCCACAATAATTCCATCTTGTTCATATTCATTTTATATAACTATGCAAATTAAATTATTATTGAATAATCCATNTCATTCGAATGAACATGCATCTAATCTAATACCAACTGATAATACTGTTGTGATGCCTAGAAAACCATTATATACAAACAAGAGTTTTGAATCACCACTGAATCAACATTGTCTTCCACAAATTACTAAAACTCATTCCAATAATTTAAATAACAATGAATATCATATTACAGAAAAGTTATTGAATCATACTAGACGATACAATAGACAAACAGAATTCAACTTCAATTGTAATGATAATAATGATTTGGGACAAATGTGTTTATCGAATACTACCATTGATAGATCTTCATCACATTCTCTTCAGCCGTTATCATCATCATCATCA]




>consensus_8650#0
TGTGTAACACCTGTTGTCAATGCAACTAAAATAACATCAAATGAATTAGAACAAACTGAA
ACTAATCTGCTAATGAATTCATTTGAATCCTATAATGATAATAATGATGACACTATTAAT
TCTAATTGCTTCACATCATCAGATGATGAAATTAGTCGAATTGCTGAAATTCTTGGTTAT
GCTATTGATAACAATGAACAATTGTTGTCACCTTCATTATATGATTTTCCTACGACAGTA
ACAGATGACAGTCAACTGTATGACTATGATAATTGTGATATTGATGGAACTGATATCTAT
TATGATTATGAACAGTCGTTCAGTCCATCTCAGCAATTGAATTGGTTATTAACACCGAGT
TATAATTTTACACAACATTTAAACATACCAGAAACCAATTCTTATGAATTATGCGAAAAT
ATCAATTCCAACAATTCATCTCGATATATTCATGGATTTAAAACTATTGAAGCACCTTCT
GAACGTTGTCAATCAACTGATTCGTTACTTGGTAAAACTGATACATCTACTCCTACTACT
AGTAGCACCAATACTGTCTTGAATTCTTCCTATAATTCACGCTTTTCTTCTTTAAAAGAA
TCGTATTCATCTTTACCGAATATAAATGTCTTAGTTGATAATGATAATAATAATAGTAAT
AACCTTACTATGATTGATGTCAGCAAATCTACATGTAATAGTGATGAGACAACTGTTATT
ATTGGCCACAATGATGATGATGACGATGATTGTAACTCGAACAGGCACGATTCCAATTCA
CCTATTATTCCTTTATTGAATACTACTATTACAAATCTTCCTATATTATCCGGTGATAAT
ACTGTCATGAAGTTATTGAAGAATTCAACTATTAACTTCATGAATAACTTTCAATCCACA
ATAATTCCATCTTGTTCATATTCATTTTATATAACTATGCAAATTAAATTATTATTGAAT
AATCCATTTCATTCGAATGAACATGCATCTAATCTAATACCAACTGATAATACTGTTGTG
ATGCCTAGAAAACCATTATATACAAACAAGAGTTTTGAATCACCACTGAATCAACATTGT
CTTCCACAAATTACTAAAACTCATTCCAATAATTTAAATAACAATGAATATCATATTACA
GAAAAGTTATTGAATCATACTAGACGATACAATAGACAAACAGAATTCAACTTCAATTGT
AATGATAATAATGATTTGGGACAAATGTGTTTATCGAATACTACCATTGATAGATCTTCA
TCACATTCTCTTCAGCCGTTATCATCATCATCATCA

consensusID : consensus_8650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 935
fasta sequence

                              [ATCAATAAGTAGTTGGAATAACTGTGAGAAACCAGTCGATTCATGTTCAAATCATCATCAATGCTAATAATTAGTTTGTTGTGTTGTGTTTTTTTTCCTTTAAATAAACACCAGAATTAATTTATCCATATGTACGTGTACAAGTTAGAACCCAATCAACACTAAGGATTACTCGACATACATGAAGTTAGTCACTGTTCAATGATTAATCAATTGTAATTATCTCAGTCTTGCGGGTGGTCATTCGCAGCCCGAATAGCTCAGCGATAACATCTCTGATTATGAAGCTTGGTGACACGGGATCGAATCCACCAGGCAGATTACAAGTCTACCTTACTTATGAAAACTAAATATTATAAAACTTAGGTTGTGTAGGGTTTCCTGTCAACTACCTTCAACCGCCACTACCTTATATCTCAACATAATGCATACTAGTCAAATCACTTGACTATTTGCTTTCAACTTAGAAGTACTTGACATAAACGACATCGGTCACTACCGAGTGATCAATCCATTGTAAATACAAGCTAAAAACACATAGATTTTTTATTTTTCTACCTTCCTATTCAGAATTTTACACAACATTTAAACATACCAGAAACCAATTCTTATGAATTATGCGAAAATATCAATTCCAACAATTCATCTCGATATATTCATGGATTTAAAACTATTGAAGCACCTTCTGAACGTTGTCAATCAACTGATTCGTTACTTGGTAAAACTGATACATCTACTCCTACTACTAGTAGCACCAATACTGTCTTGAATTCTTCCTATAATTCACGCTTTTCTTCTTTAAAAGAATCGTATTCATCTTTACCGAATATAAATGTCTTAGTTGATAATGATAATAATAATAGTAATAACCTTACTATGATTGATGTCAGCAAATCTACATGTAATAGTGATGAGACAACTGTTATTATTGGCCA]

[+] EMBL CD134251             [ATCAATAAGTAGTTGGAATAACTGTGAGAAACCAGTCGATTCATGTTCAAATCATCATCAATGCTAATAATTAGTTTGTTGTGTTGTGTTTTTTTTCCTTTAAATAAACACCAGAATTAATTTATCCATATGTACGTGTACAAGTTAGAACCCAATCAACACTAAGGATTACTCGACATACATGAAGTTAGTCACTGTTCAATGATTAATCAATTGTAATTATCTCAGTCTTGCGGGTGGTCATTCGCAGCCCGAATAGCTCAGCGATAACATCTCTGATTATGAAGCTTGGTGACACGGGATCGAATCCACCAGGCAGATTACAAGTCTACCTTACTTATGAAAACTAAATATTATAAAACTTAGGTTGTGTAGGGTTTCCTGTCAACTACCTTCAACCGCCACTACCTTATATCTCAACATAATGCATACTAGTCAAATCACTTGACTATTTGCTTTCAACTTAGAAGTACTTGACATAAACGACATCGGTCACTACCGAGTGATCAATCCATTGTAAATACAAGCTAAAAACACATAGATTTTTTATTTTTCTACCTTCCTATTCAGAATTTTACACAACATTT                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD191940             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGAGTGATCAATCCATTGTAAATACAAGCTAAAAACACATAGATTTTTTATTTTTCTACCTTCCTATTCAGAATTTTACACAACATTTAAACATACCAGAAACCAATTCTTATGAATTATGCGAAAATATCAATTCCAACAATTCATCTCGATATATTCATGGATTTAAAACTATTGAAGCACCTTCTGAACGTTGTCAATCAACTGATTCGTTACTTGGTAAAACTGATACATCTACTCCTACTACTAGTAGCACCAATACTGTCTTGAATTCTTCCTATAATTCACGCTTTTCTTCTTTAAAAGAATCGTATTCATCTTTACCGAATATAAATGTCTTAGTTGATAATGATAATAATAATAGTAATAACCTTACTATGATTGATGTCAGCAAATCTACATGTAATAGTGATGAGACAACTGTTATTATTGGCCA]




>consensus_8650#1
ATCAATAAGTAGTTGGAATAACTGTGAGAAACCAGTCGATTCATGTTCAAATCATCATCA
ATGCTAATAATTAGTTTGTTGTGTTGTGTTTTTTTTCCTTTAAATAAACACCAGAATTAA
TTTATCCATATGTACGTGTACAAGTTAGAACCCAATCAACACTAAGGATTACTCGACATA
CATGAAGTTAGTCACTGTTCAATGATTAATCAATTGTAATTATCTCAGTCTTGCGGGTGG
TCATTCGCAGCCCGAATAGCTCAGCGATAACATCTCTGATTATGAAGCTTGGTGACACGG
GATCGAATCCACCAGGCAGATTACAAGTCTACCTTACTTATGAAAACTAAATATTATAAA
ACTTAGGTTGTGTAGGGTTTCCTGTCAACTACCTTCAACCGCCACTACCTTATATCTCAA
CATAATGCATACTAGTCAAATCACTTGACTATTTGCTTTCAACTTAGAAGTACTTGACAT
AAACGACATCGGTCACTACCGAGTGATCAATCCATTGTAAATACAAGCTAAAAACACATA
GATTTTTTATTTTTCTACCTTCCTATTCAGAATTTTACACAACATTTAAACATACCAGAA
ACCAATTCTTATGAATTATGCGAAAATATCAATTCCAACAATTCATCTCGATATATTCAT
GGATTTAAAACTATTGAAGCACCTTCTGAACGTTGTCAATCAACTGATTCGTTACTTGGT
AAAACTGATACATCTACTCCTACTACTAGTAGCACCAATACTGTCTTGAATTCTTCCTAT
AATTCACGCTTTTCTTCTTTAAAAGAATCGTATTCATCTTTACCGAATATAAATGTCTTA
GTTGATAATGATAATAATAATAGTAATAACCTTACTATGATTGATGTCAGCAAATCTACA
TGTAATAGTGATGAGACAACTGTTATTATTGGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8650#0      ------------------------------------------------------------
consensus_8650#1      ATCAATAAGTAGTTGGAATAACTGTGAGAAACCAGTCGATTCATGTTCAAATCATCATCA 60
                                                                                  

consensus_8650#0      ------------------------------------------------------------
consensus_8650#1      ATGCTAATAATTAGTTTGTTGTGTTGTGTTTTTTTTCCTTTAAATAAACACCAGAATTAA 120
                                                                                  

consensus_8650#0      ------------------------------------------TGTGTAACACCTGTTGTC 18
consensus_8650#1      TTTATCCATATGTACGTGTACAAGTTAGAACCCAATCAACACTAAGGATTACTCGACATA 180
                                                                *  * *  **  *   * 

consensus_8650#0      AATGCAACTAAAA------TAACATCAAATGAATTAGAACAAACTGAAACTAATCTGCTA 72
consensus_8650#1      CATGAAGTTAGTCACTGTTCAATGATTAATCAATTGTAATTATCTCAGTCTTGCGGGTGG 240
                       *** *  **          **     *** ****  **  * ** *  **     *   

consensus_8650#0      ATGAATTCA-TTTGAATCCTATAATGATAATA------ATGATGACACT--ATTAATTCT 123
consensus_8650#1      TCATTCGCAGCCCGAATAGCTCAGCGATAACATCTCTGATTATGAAGCTTGGTGACACGG 300
                             **    ****     *  ***** *      ** ****  **   * *     

consensus_8650#0      AATTGCTTCACATCATCAGATGATGAAATTAGTCGAATTGCTGAAATTCTTGGTTATGCT 183
consensus_8650#1      GATCGAATCCACCAGGCAGATTACAAGTCTACCTTACTTATGAAAACTAAATATTATAAA 360
                       ** *  **       ***** *  *   **    * **    *** *     ****   

consensus_8650#0      ATTGATAACAATGAACAATTGTTGTCACCTTCATTATATG---ATTTTCCTACGACA--- 237
consensus_8650#1      ACTTAGGTTGTGTAGGGTTTCCTGTCAACTACCTTCAACCGCCACTACCTTATATCTCAA 420
                      * * *        *    **  ***** ** * **  *     * *  * **   *    

consensus_8650#0      -GTAACAGATGACAGTCAACT-GTATGACTATGATAATTGTGATATTGATGGAACTGATA 295
consensus_8650#1      CATAATGCATACTAGTCAAATCACTTGACTATT-TGCTTTCAACTTAGAAGTACTTGACA 479
                        ***   **   ****** *    *******  *  **   *  * ** * *  *** *

consensus_8650#0      TCTATTAT---GATTATGAACAGTCGTTCAGTCCATCTCAG--------------CAATT 338
consensus_8650#1      TAAACGACATCGGTCACTACCGAGTGATCAATCCATTGTAAATACAAGCTAAAAACACAT 539
                      *  *  *    * * *  * *    * *** *****   *               **  *

consensus_8650#0      GAATTGGTTATTAACA------CCGAGTTATAATTTTACACAACATTTAAACATACCAGA 392
consensus_8650#1      AGATTTTTTATTTTTCTACCTTCCTATTCAGAATTTTACACAACATTTAAACATACCAGA 599
                        ***  *****          ** * * * *****************************

consensus_8650#0      AACCAATTCTTATGAATTATGCGAAAATATCAATTCCAACAATTCATCTCGATATATTCA 452
consensus_8650#1      AACCAATTCTTATGAATTATGCGAAAATATCAATTCCAACAATTCATCTCGATATATTCA 659
                      ************************************************************

consensus_8650#0      TGGATTTAAAACTATTGAAGCACCTTCTGAACGTTGTCAATCAACTGATTCGTTACTTGG 512
consensus_8650#1      TGGATTTAAAACTATTGAAGCACCTTCTGAACGTTGTCAATCAACTGATTCGTTACTTGG 719
                      ************************************************************

consensus_8650#0      TAAAACTGATACATCTACTCCTACTACTAGTAGCACCAATACTGTCTTGAATTCTTCCTA 572
consensus_8650#1      TAAAACTGATACATCTACTCCTACTACTAGTAGCACCAATACTGTCTTGAATTCTTCCTA 779
                      ************************************************************

consensus_8650#0      TAATTCACGCTTTTCTTCTTTAAAAGAATCGTATTCATCTTTACCGAATATAAATGTCTT 632
consensus_8650#1      TAATTCACGCTTTTCTTCTTTAAAAGAATCGTATTCATCTTTACCGAATATAAATGTCTT 839
                      ************************************************************

consensus_8650#0      AGTTGATAATGATAATAATAATAGTAATAACCTTACTATGATTGATGTCAGCAAATCTAC 692
consensus_8650#1      AGTTGATAATGATAATAATAATAGTAATAACCTTACTATGATTGATGTCAGCAAATCTAC 899
                      ************************************************************

consensus_8650#0      ATGTAATAGTGATGAGACAACTGTTATTATTGGCCACAATGATGATGATGACGATGATTG 752
consensus_8650#1      ATGTAATAGTGATGAGACAACTGTTATTATTGGCCA------------------------ 935
                      ************************************                        

consensus_8650#0      TAACTCGAACAGGCACGATTCCAATTCACCTATTATTCCTTTATTGAATACTACTATTAC 812
consensus_8650#1      ------------------------------------------------------------
                                                                                  

consensus_8650#0      AAATCTTCCTATATTATCCGGTGATAATACTGTCATGAAGTTATTGAAGAATTCAACTAT 872
consensus_8650#1      ------------------------------------------------------------
                                                                                  

consensus_8650#0      TAACTTCATGAATAACTTTCAATCCACAATAATTCCATCTTGTTCATATTCATTTTATAT 932
consensus_8650#1      ------------------------------------------------------------
                                                                                  

consensus_8650#0      AACTATGCAAATTAAATTATTATTGAATAATCCATTTCATTCGAATGAACATGCATCTAA 992
consensus_8650#1      ------------------------------------------------------------
                                                                                  

consensus_8650#0      TCTAATACCAACTGATAATACTGTTGTGATGCCTAGAAAACCATTATATACAAACAAGAG 1052
consensus_8650#1      ------------------------------------------------------------
                                                                                  

consensus_8650#0      TTTTGAATCACCACTGAATCAACATTGTCTTCCACAAATTACTAAAACTCATTCCAATAA 1112
consensus_8650#1      ------------------------------------------------------------
                                                                                  

consensus_8650#0      TTTAAATAACAATGAATATCATATTACAGAAAAGTTATTGAATCATACTAGACGATACAA 1172
consensus_8650#1      ------------------------------------------------------------
                                                                                  

consensus_8650#0      TAGACAAACAGAATTCAACTTCAATTGTAATGATAATAATGATTTGGGACAAATGTGTTT 1232
consensus_8650#1      ------------------------------------------------------------
                                                                                  

consensus_8650#0      ATCGAATACTACCATTGATAGATCTTCATCACATTCTCTTCAGCCGTTATCATCATCATC 1292
consensus_8650#1      ------------------------------------------------------------
                                                                                  

consensus_8650#0      ATCA 1296
consensus_8650#1      ----