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Schistosoma mansoni
cluster # 8651 cluster # 8651       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8651#0 length = 603 sequences # 4  
consensus_8651#1 length = 559 sequences # 1  
consensus_8651#2 length = 473 sequences # 2  

consensusID : consensus_8651#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 603
fasta sequence
                              [GCAATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAACACTACTGGCGTATTCGGCAGATAATTCCACTTGTATATGTTAAGTTGTACAGTTTTCAACTTCTGCGTGGATTGGCTTACATTCACAGTCAAGGCGTATGCCATCGAGATATAAAGC]

[+] EMBL AI067259             [GCAATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAACACTACTGGCGTATTCGGCAGATAATTCCACTTGTATATGTTAAGTTGTACAGTTTTCAACTTCTGCGTGGATTGGCTTACATTCACAGTCAAGGCGTATGCCATCGAGATATAAAGC]
[+] EMBL AI068063             [           GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAA                                                                                                                                                               ]
[+] EMBL AI067398             [           GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAA                                                                                                                                                               ]
[+] EMBL AI067140             [           GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGGTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAA                                                                                                                                                                                                                                                                              ]


>consensus_8651#0 GCAATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAA AAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATC CCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAG CAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTG GAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAA TTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAAC TTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAAC CAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTA TCAAACACTACTGGCGTATTCGGCAGATAATTCCACTTGTATATGTTAAGTTGTACAGTT TTCAACTTCTGCGTGGATTGGCTTACATTCACAGTCAAGGCGTATGCCATCGAGATATAA AGC



consensusID : consensus_8651#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence
                              [CAATGTTGGCAGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGTAAGTCAGAATCATTATTTTTCAGGATATAAATATGATGGATTGCTAATGTTCATTTTGCTTTTTTTATTACATGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACGGATACTTCGGAAACTTAAGCACTGCAATATTGNTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCANACATTGAGCCGNCTTATCCA]

[+] EMBL CD118606             [CAATGTTGGCAGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGTAAGTCAGAATCATTATTTTTCAGGATATAAATATGATGGATTGCTAATGTTCATTTTGCTTTTTTTATTACATGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACGGATACTTCGGAAACTTAAGCACTGCAATATTGNTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCANACATTGAGCCGNCTTATCCA]


>consensus_8651#1 CAATGTTGGCAGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAA AAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGTAAGTCAGAATCAT TATTTTTCAGGATATAAATATGATGGATTGCTAATGTTCATTTTGCTTTTTTTATTACAT GATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGT CTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGG ATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACG ATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTAC GGATACTTCGGAAACTTAAGCACTGCAATATTGNTTCTCTGTATTATTACTTTTATTCAA CATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCANA CATTGAGCCGNCTTATCCA



consensusID : consensus_8651#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 473
fasta sequence
                              [AATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAA]

[-] EMBL CD156783             [AATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAA]
[-] EMBL CD156773             [AATGTTGGCGCATTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAA]


>consensus_8651#2 AATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAA ACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGGATCCCGTCCGTTGTT TCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTG ATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTT TTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTC TGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCA ATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTT ACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8651#0      GCAATGTTGGC-GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCA 59
consensus_8651#2      --AATGTTGGC-GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCA 57
consensus_8651#1      -CAATGTTGGCAGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCA 59
                        ********* ************************************************

consensus_8651#0      AAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAG------------- 106
consensus_8651#2      AAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAG------------- 104
consensus_8651#1      AAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGTAAGTCAGAATCA 119
                      ***********************************************             

consensus_8651#0      ------------------------------------------------------------
consensus_8651#2      ------------------------------------------------------------
consensus_8651#1      TTATTTTTCAGGATATAAATATGATGGATTGCTAATGTTCATTTTGCTTTTTTTATTACA 179
                                                                                  

consensus_8651#0      --ATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAG 164
consensus_8651#2      ------------GATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAG 152
consensus_8651#1      TGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAG 239
                                  ************************************************

consensus_8651#0      TCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCG 224
consensus_8651#2      TCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCG 212
consensus_8651#1      TCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCG 299
                      ************************************************************

consensus_8651#0      GATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGAC 284
consensus_8651#2      GATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGAC 272
consensus_8651#1      GATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGAC 359
                      ************************************************************

consensus_8651#0      GATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTA 344
consensus_8651#2      GATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTA 332
consensus_8651#1      GATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTA 419
                      ************************************************************

consensus_8651#0      CAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCA 404
consensus_8651#2      CAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCA 392
consensus_8651#1      CGGATACTTCGGAAACTTAAGCACTGCAATATTGNTTCTCTGTATTATTACTTTTATTCA 479
                      * ******************************** *************************

consensus_8651#0      ACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAA 464
consensus_8651#2      ACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAA 452
consensus_8651#1      ACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAN 539
                      *********************************************************** 

consensus_8651#0      ACATTGAGCCGCCTTATCAAACACTACTGGCGTATTCGGCAGATAATTCCACTTGTATAT 524
consensus_8651#2      ACATTGAGCCGCCTTATCAAA--------------------------------------- 473
consensus_8651#1      ACATTGAGCCGNCTTATCCA---------------------------------------- 559
                      *********** ****** *                                        

consensus_8651#0      GTTAAGTTGTACAGTTTTCAACTTCTGCGTGGATTGGCTTACATTCACAGTCAAGGCGTA 584
consensus_8651#2      ------------------------------------------------------------
consensus_8651#1      ------------------------------------------------------------
                                                                                  

consensus_8651#0      TGCCATCGAGATATAAAGC 603
consensus_8651#2      -------------------
consensus_8651#1      -------------------
                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)