These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 603 fasta sequence [GCAATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAACACTACTGGCGTATTCGGCAGATAATTCCACTTGTATATGTTAAGTTGTACAGTTTTCAACTTCTGCGTGGATTGGCTTACATTCACAGTCAAGGCGTATGCCATCGAGATATAAAGC] [+] EMBL AI067259 [GCAATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAACACTACTGGCGTATTCGGCAGATAATTCCACTTGTATATGTTAAGTTGTACAGTTTTCAACTTCTGCGTGGATTGGCTTACATTCACAGTCAAGGCGTATGCCATCGAGATATAAAGC] [+] EMBL AI068063 [ GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAA ] [+] EMBL AI067398 [ GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAA ] [+] EMBL AI067140 [ GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGGTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAA ] consensusID : consensus_8651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [CAATGTTGGCAGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGTAAGTCAGAATCATTATTTTTCAGGATATAAATATGATGGATTGCTAATGTTCATTTTGCTTTTTTTATTACATGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACGGATACTTCGGAAACTTAAGCACTGCAATATTGNTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCANACATTGAGCCGNCTTATCCA] [+] EMBL CD118606 [CAATGTTGGCAGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGTAAGTCAGAATCATTATTTTTCAGGATATAAATATGATGGATTGCTAATGTTCATTTTGCTTTTTTTATTACATGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACGGATACTTCGGAAACTTAAGCACTGCAATATTGNTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCANACATTGAGCCGNCTTATCCA] consensusID : consensus_8651#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence [AATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAA] [-] EMBL CD156783 [AATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAA] [-] EMBL CD156773 [AATGTTGGCGCATTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8651#0 GCAATGTTGGC-GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCA 59 consensus_8651#2 --AATGTTGGC-GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCA 57 consensus_8651#1 -CAATGTTGGCAGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCA 59 ********* ************************************************ consensus_8651#0 AAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAG------------- 106 consensus_8651#2 AAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAG------------- 104 consensus_8651#1 AAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGTAAGTCAGAATCA 119 *********************************************** consensus_8651#0 ------------------------------------------------------------ consensus_8651#2 ------------------------------------------------------------ consensus_8651#1 TTATTTTTCAGGATATAAATATGATGGATTGCTAATGTTCATTTTGCTTTTTTTATTACA 179 consensus_8651#0 --ATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAG 164 consensus_8651#2 ------------GATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAG 152 consensus_8651#1 TGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAG 239 ************************************************ consensus_8651#0 TCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCG 224 consensus_8651#2 TCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCG 212 consensus_8651#1 TCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCG 299 ************************************************************ consensus_8651#0 GATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGAC 284 consensus_8651#2 GATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGAC 272 consensus_8651#1 GATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGAC 359 ************************************************************ consensus_8651#0 GATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTA 344 consensus_8651#2 GATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTA 332 consensus_8651#1 GATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTA 419 ************************************************************ consensus_8651#0 CAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCA 404 consensus_8651#2 CAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCA 392 consensus_8651#1 CGGATACTTCGGAAACTTAAGCACTGCAATATTGNTTCTCTGTATTATTACTTTTATTCA 479 * ******************************** ************************* consensus_8651#0 ACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAA 464 consensus_8651#2 ACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAA 452 consensus_8651#1 ACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAN 539 *********************************************************** consensus_8651#0 ACATTGAGCCGCCTTATCAAACACTACTGGCGTATTCGGCAGATAATTCCACTTGTATAT 524 consensus_8651#2 ACATTGAGCCGCCTTATCAAA--------------------------------------- 473 consensus_8651#1 ACATTGAGCCGNCTTATCCA---------------------------------------- 559 *********** ****** * consensus_8651#0 GTTAAGTTGTACAGTTTTCAACTTCTGCGTGGATTGGCTTACATTCACAGTCAAGGCGTA 584 consensus_8651#2 ------------------------------------------------------------ consensus_8651#1 ------------------------------------------------------------ consensus_8651#0 TGCCATCGAGATATAAAGC 603 consensus_8651#2 ------------------- consensus_8651#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||