cluster # 8653

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Schistosoma mansoni
cluster # 8653 cluster # 8653 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8653#0 length = 1118 sequences # 6

consensus_8653#1 length = 289 sequences # 1

consensusID : consensus_8653#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1118
fasta sequence

                              [GCCCGGTACCCTGGCTTCCACATCATCTCAATCATTCTTTAAATTCTGTAGTTATTCCAATTACTGTTTCTTTCCTCTTCTCTTTATTTCAAACTTCTGCTGATA-AGTATTTCACTCCTAATCCCTGATACATACTTCTTATGTCTATCCTCATAGGTAGCGCACACCTCAACTATACATAAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGATATGAACTTATAACTTCATAAGATTAACTTAGATCATTAACAACAAAATTATAGGAAGATATAAGTAAAACTAAATCGAGCTTCCCGCAGAATTACATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGCTTTCTCCAGTTCCTGTGAACGATCGTTACTTTCAGATGCGTCTGATTCTTCTCCAGATGAAAACCTAGTAAATGGTGCATGATCTGGAAAAGAGTTTTTTATATTATGACAATCATCTGTTTCATTTTGATTGGAGTTGAAATTCGACTTAGTGCAAAGATCAGGAACGTTTAAAAAGCGAGGTATTATATTTTCAGCTACTTCAATAAGAGCATTAACAAGTCCTGCTNTATTTGGTAATTCACATAGACTGGGTGAAGATGACAGGTTTGGTTTTGAAGACAAATTTACATTAGGAGTTTCTTGTTGGCTTTCATAGGATGTTTGTACTTGTGCTAAACGCTCTTGCCATTTTGTAAAATCTGGTACACCACCGAGACCACCGGATCTTAGACGAACCTCAGTATCTAAAATATTTTTTAACAATGCTCCTGCCAAAGCGGCTCCAGCAGGAAGATTGCGTTTATGGTGAGATGGACGTTTTTCTATATTCGCAGGAGTACCATTTGTTGTGTCAGCCTTAGGTACCAATCCATTTGAGAGACCACTTTTCCATCTTTTTTTAAGTGATTCCAGAAACCCGTCTGCCAACAACTGACTTTTTAAATGACTTTCTCGAACACCACGAGTTAGCAATGAATTCAACAATTCGTCTAACTGTTCAGGACGATCGTAAAAATACCAATTACTCCAGG]

[+] EMBL CD067837             [GCCCGGTACCCTGGCTTCCACATCATCTCAATCATTCTTTAAATTCTGTAGTTATTCCAATTACTGTTTCTTTCCTCTTCTCTTTATTTCAAACTTCTGCTGATA AGTATTTCACTCCCAATCCCTGATACATACTTCTTATGTCTATCCTCATAGGTAGCGCACACCTCAACTATACATAAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGATATGAACTTATAACTTCATAAGATTAACTTAGATCATTAACAACAAAATTATAGGAAGATATAAGTAAAACTAAATCGAGCTTCCCGCAGAATTACATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGCTTTCTCCAGTTCCTGTGAACGATCGTTACTTTCAGATGCGTCTGATTCTTCTCCAGATGAAAACCTAGTAAATGGTGCATGATCTGGAAAAGAGTTTTTTATATTATGACAATCATCTGTTTCATTTTGATTGGAGTTGAAATTCGACTTAGTGCAAAGATCAGGAACGTTTAAAAAGCGAGGTATTATATTTTCAGCTACTTCAATAAGAGCATTAACAAGTCCTGCTNTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD067557             [                                                                                           AACTTCTGCTGATATAG ATTAAACTCCTAAACCCTGAGACGTACTTCTTATGGCTATACTCATAGGTAGCGCACACCTCAACTATACATAAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGGTATGAACTTATAACTTCATAAAAGTAACTTAAATCATTAACAACCCAATTATAGGAAGATATAAGTAAAACTAAATCGAGCTTCCCGCAGAATTACATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD067556             [                                                                                           AACTTCTGCTGATA AGTATTTCACTCCTAATCCCTGATACATACTTCTTATGTCTATCCTCATAGGTAGCGCACACCTCAACTATACATAAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGATATGAACTTATAACTTCATAAGATTAACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD115707             [                                                                                                                                                                                                                                                                                                                                   AGATTTAATCGGGTCAGTGTACGAGCGTTTTGACTTTCAGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGCTTTCTCCAGTTCCTGTGAACGATCGTTACTNTCAGATGCGTCTGATTCTTCTCCAGATGAAAACCTAGTAAATGGTGCATGATCTGGAAAAGAGTTTTTTATATTATGACAATCATCTGTTTCATTTTGATTGGAGTTGAAATTCGACTTAGTGCAAAGATCAGGAACGTTTAAAAAGCGAGGTATTATATTTTCAGCTACTTCAATAAGAGCATTAACAAGTCCTGCTTTATTTGGTAATTCACATAGACTGGGTGAAGATGACAGGTTTGGTTTTGAAGACAAATTTACATTAGGAGTTTCTTGTTGGCTTTCATAGGATGTTTGTACTTGTGCTAAACGCTCTTGCCATTTTGTAAAATCTGGTACACCACCGAGACCACCGGATCTTAGACGAACCTCAGTATCTAAAATATTTTTTAACAATGCTCCTGCCAAAGCGGCTCCAGCAGGAAGATT                                                                                                                                                                                                                                            ]
[-] EMBL CD177701             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTAGACGAACCTCAGTATCTAAAATATTTTTTAACAATGCTCCTGCCANAGCGGCTCCAGCAGGAAGATTGCGTTTATGGTGAGATGGACGTTTTTCTATATTCGCAGGAGTACCATTTGTTGTGTCAGCCTTAGGTACCAATCCATTTGAGAGACCACTTTTCCATCTTTTTTTAAGTGATTCCAGAAACCCGTCTGCCAACAACTGACTTTTTAAATGACTTTCTCGAACACCACGAGTTAGCAATGAATTCAACAATTCGTCTAACTGTTCAGGACGATCGTAAAAATACCAATTACTCCAGG]
[-] EMBL CD177713             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGGAGTACCATTTGTTGTGTCAGCCTTAGGTACCAATCCATTTGAGAGACCACTTTTCCATC TTTTTTAAGTGATTCCAGAAACCCGTCTGCCAACAACTGAC TTTTAAATGACTTTCTCGAACACCACGAGTTAGCAATGAATTCAACAATTCGTCTAACTGTTCAGGACGATCGTAA                   ]




>consensus_8653#0
GCCCGGTACCCTGGCTTCCACATCATCTCAATCATTCTTTAAATTCTGTAGTTATTCCAA
TTACTGTTTCTTTCCTCTTCTCTTTATTTCAAACTTCTGCTGATAAGTATTTCACTCCTA
ATCCCTGATACATACTTCTTATGTCTATCCTCATAGGTAGCGCACACCTCAACTATACAT
AAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGATATGAACTTATAACTTCATAA
GATTAACTTAGATCATTAACAACAAAATTATAGGAAGATATAAGTAAAACTAAATCGAGC
TTCCCGCAGAATTACATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTC
AGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAAC
AGCTTTCTCCAGTTCCTGTGAACGATCGTTACTTTCAGATGCGTCTGATTCTTCTCCAGA
TGAAAACCTAGTAAATGGTGCATGATCTGGAAAAGAGTTTTTTATATTATGACAATCATC
TGTTTCATTTTGATTGGAGTTGAAATTCGACTTAGTGCAAAGATCAGGAACGTTTAAAAA
GCGAGGTATTATATTTTCAGCTACTTCAATAAGAGCATTAACAAGTCCTGCTNTATTTGG
TAATTCACATAGACTGGGTGAAGATGACAGGTTTGGTTTTGAAGACAAATTTACATTAGG
AGTTTCTTGTTGGCTTTCATAGGATGTTTGTACTTGTGCTAAACGCTCTTGCCATTTTGT
AAAATCTGGTACACCACCGAGACCACCGGATCTTAGACGAACCTCAGTATCTAAAATATT
TTTTAACAATGCTCCTGCCAAAGCGGCTCCAGCAGGAAGATTGCGTTTATGGTGAGATGG
ACGTTTTTCTATATTCGCAGGAGTACCATTTGTTGTGTCAGCCTTAGGTACCAATCCATT
TGAGAGACCACTTTTCCATCTTTTTTTAAGTGATTCCAGAAACCCGTCTGCCAACAACTG
ACTTTTTAAATGACTTTCTCGAACACCACGAGTTAGCAATGAATTCAACAATTCGTCTAA
CTGTTCAGGACGATCGTAAAAATACCAATTACTCCAGG

consensusID : consensus_8653#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [TAGGGCAGAACCAATCACCTGTTGGTACACGTTTTAATGGTGGACGTAAACAGTAGAGATGAAAAGCAAGATTACAACCGTCACAAAGTAGTAAATTATCATCATCTGTTTTCCGACGACAAATACGACAGCGCGCATCCTCCACCGACTTTTCCCAGCGAACACATGCATCCAGACATGCATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGC]

[-] EMBL CD201976             [TAGGGCAGAACCAATCACCTGTTGGTACACGTTTTAATGGTGGACGTAAACAGTAGAGATGAAAAGCAAGATTACAACCGTCACAAAGTAGTAAATTATCATCATCTGTTTTCCGACGACAAATACGACAGCGCGCATCCTCCACCGACTTTTCCCAGCGAACACATGCATCCAGACATGCATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGC]




>consensus_8653#1
TAGGGCAGAACCAATCACCTGTTGGTACACGTTTTAATGGTGGACGTAAACAGTAGAGAT
GAAAAGCAAGATTACAACCGTCACAAAGTAGTAAATTATCATCATCTGTTTTCCGACGAC
AAATACGACAGCGCGCATCCTCCACCGACTTTTCCCAGCGAACACATGCATCCAGACATG
CATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGCCAAGCTG
TTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8653#0      GCCCGGTACCCTGGCTTCCACATCATCTCAATCATTCTTTAAATTCTGTAGTTATTCCAA 60
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      TTACTGTTTCTTTCCTCTTCTCTTTATTTCAAACTTCTGCTGATAAGTATTTCACTCCTA 120
consensus_8653#1      ----------------------------------------------------------TA 2
                                                                                **

consensus_8653#0      ATCCCTGATACATACTTCTTATGTCTATCCTCATAGGTAGCGCACACCTCAACTATACAT 180
consensus_8653#1      GGGC--AGAACCAATCACCTGTTGGTACACGTTTTAATGGTGGACGTAAACAGTAGAGAT 60
                         *     **  *   * * *   **  *   *   * * * **      * ** * **

consensus_8653#0      AAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGATATGAACTTATAACTTCATAA 240
consensus_8653#1      GAAAAGCAAGATTACAACCGTCACAAAGTAGTAAATTATCATCATCT----GTTTTCCGA 116
                       *   **   ****          ** **** *****   ** * **      **    *

consensus_8653#0      GATTAACTTAGATCATTAACAACAAAATTATAGGAAGATATAAGTAAAACTAAATCGAGC 300
consensus_8653#1      CGACAAATACGACAGCGCGCATC----CTCCACCGACTTTT---CCCAGCGAACACATGC 169
                          ** *  **       ** *     *  *   *  * *      * * **  *  **

consensus_8653#0      TTCCCGCAGAATTACATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTC 360
consensus_8653#1      ATCC---AGACATGCATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTC 226
                       ***   ***  * **********************************************

consensus_8653#0      AGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAAC 420
consensus_8653#1      AGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAAC 286
                      ************************************************************

consensus_8653#0      AGCTTTCTCCAGTTCCTGTGAACGATCGTTACTTTCAGATGCGTCTGATTCTTCTCCAGA 480
consensus_8653#1      AGC--------------------------------------------------------- 289
                      ***                                                         

consensus_8653#0      TGAAAACCTAGTAAATGGTGCATGATCTGGAAAAGAGTTTTTTATATTATGACAATCATC 540
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      TGTTTCATTTTGATTGGAGTTGAAATTCGACTTAGTGCAAAGATCAGGAACGTTTAAAAA 600
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      GCGAGGTATTATATTTTCAGCTACTTCAATAAGAGCATTAACAAGTCCTGCTNTATTTGG 660
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      TAATTCACATAGACTGGGTGAAGATGACAGGTTTGGTTTTGAAGACAAATTTACATTAGG 720
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      AGTTTCTTGTTGGCTTTCATAGGATGTTTGTACTTGTGCTAAACGCTCTTGCCATTTTGT 780
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      AAAATCTGGTACACCACCGAGACCACCGGATCTTAGACGAACCTCAGTATCTAAAATATT 840
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      TTTTAACAATGCTCCTGCCAAAGCGGCTCCAGCAGGAAGATTGCGTTTATGGTGAGATGG 900
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      ACGTTTTTCTATATTCGCAGGAGTACCATTTGTTGTGTCAGCCTTAGGTACCAATCCATT 960
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      TGAGAGACCACTTTTCCATCTTTTTTTAAGTGATTCCAGAAACCCGTCTGCCAACAACTG 1020
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      ACTTTTTAAATGACTTTCTCGAACACCACGAGTTAGCAATGAATTCAACAATTCGTCTAA 1080
consensus_8653#1      ------------------------------------------------------------
                                                                                  

consensus_8653#0      CTGTTCAGGACGATCGTAAAAATACCAATTACTCCAGG 1118
consensus_8653#1      --------------------------------------